>GI1L3_ARATH (Q940G6) Probable gibberellin receptor GID1L3 (EC 3.-.-.-)|
           (GID1-like protein 3)
          Length = 344

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 222 VPASVDPATGVASKDVVIDXXXXXXVRIYLPS 317
           VPA+ +P  GV S DV+ID       R+Y P+
Sbjct: 53  VPANANPVNGVFSFDVIIDRQTNLLSRVYRPA 84

>RRP3_CANAL (Q5ACU6) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)|
          Length = 399

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 177 RYKSGRVERFVGTDTVPASVDPATGVASKDVVIDXXXXXXVRIYLPSPGNGTRSGRGGR 353
           ++KS +    V TD     +D    + S DVVI+       + Y+   G   R+GR G+
Sbjct: 267 KFKSNQANILVATDVAARGLD----IPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGK 321

>RRP3_DEBHA (Q6BQ61) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)|
          Length = 477

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +3

Query: 177 RYKSGRVERFVGTDTVPASVDPATGVASKDVVIDXXXXXXVRIYLPSPGNGTRSGRGGR 353
           ++K+G+    + TD     +D    + S D+VI+       + Y+   G   R+G+ G+
Sbjct: 349 KFKAGKANILIATDVAARGLD----IPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGK 403

>GID1_ORYSA (Q6L545) Gibberellin receptor GID1 (EC 3.-.-.-)|
           (Gibberellin-insensitive dwarf protein 1) (Protein
           GIBBERELLIN INSENSITIVE DWARF1)
          Length = 354

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +3

Query: 177 RYKSGRVERFVGT---DTVPASVDPATGVASKDVVIDXXXXXXVRIY 308
           R   G  ER +G      VPA+  P  GV+S D +ID      VRIY
Sbjct: 35  RRADGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIY 81

>RRP3_SCHPO (Q9P6N8) ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)|
          Length = 465

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 177 RYKSGRVERFVGTDTVPASVDPATGVASKDVVIDXXXXXXVRIYLPSPGNGTRSGRGGR 353
           ++KSG     V TD     +D    +   DVVI+       + Y+   G   R+GR G+
Sbjct: 330 KFKSGARSTLVATDVAARGLD----IPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGK 384

>DRS1_SCHPO (Q09903) ATP-dependent RNA helicase drs1 (EC 3.6.1.-)|
          Length = 754

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +3

Query: 180 YKSGRVERFVGTDTVPASVDPATGVASKDVVIDXXXXXXVRIYLPSPGNGTRSGRGGR 353
           ++ G+    + TD     +D    +   +VVI+        +YL   G   R+GR GR
Sbjct: 550 FRDGKCNYLLATDVASRGID----IKGIEVVINYEAPATHEVYLHRVGRTARAGRSGR 603

>RRP3_CANGA (Q6FNK8) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)|
          Length = 493

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 180 YKSGRVERFVGTDTVPASVDPATGVASKDVVIDXXXXXXVRIYLPSPGNGTRSGRGGR 353
           +K+G+    V TD     +D    + S D+VI+       + Y+   G   R+GR G+
Sbjct: 359 FKAGKRSILVATDVAARGLD----IPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGK 412

>RRP3_KLULA (Q6CT85) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)|
          Length = 487

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 180 YKSGRVERFVGTDTVPASVDPATGVASKDVVIDXXXXXXVRIYLPSPGNGTRSGRGGR 353
           +K+G+    V TD     +D    + S D+VI+       + Y+   G   R+GR G+
Sbjct: 353 FKAGKRSILVATDVAARGLD----IPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGK 406

>RRP3_YEAST (P38712) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-) (Ribosomal|
           RNA-processing protein RRP3)
          Length = 501

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 180 YKSGRVERFVGTDTVPASVDPATGVASKDVVIDXXXXXXVRIYLPSPGNGTRSGRGGR 353
           +K+G+    V TD     +D    + S D+V++       + Y+   G   R+GR G+
Sbjct: 367 FKAGKRSILVATDVAARGLD----IPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGK 420

>PDI_MEDSA (P29828) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI)|
          Length = 512

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +3

Query: 180 YKSGRVERFVGTDTVPAS----VDPATGVASKDVVIDXXXXXXVRIYLPSPGN 326
           YK G+VE FV ++ +P +    V    G   +DVV        +  Y P  G+
Sbjct: 357 YKDGKVEPFVKSEPIPETNNEPVKVVVGQTLEDVVFKSGKNVLIEFYAPWCGH 409

>DRS1_ASPOR (Q2UQI6) ATP-dependent RNA helicase drs1 (EC 3.6.1.-)|
          Length = 820

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 180 YKSGRVERFVGTDTVPASVDPATGVASKDVVIDXXXXXXVRIYLPSPGNGTRSGRGGR 353
           ++ G+V   + TD     +D    +   + VI+        IYL   G   R+GR GR
Sbjct: 593 FREGKVSFLLATDLAARGLD----IKGVETVINYEAPQSHEIYLHRVGRTARAGRSGR 646

>CNGC7_ARATH (Q9S9N5) Putative cyclic nucleotide-gated ion channel 7 (Cyclic|
           nucleotide- and calmodulin-regulated ion channel 7)
          Length = 738

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 177 RYKSGRVERFVGTDTVPASVDPATGV 254
           +Y SG+ E+FV  D + +S  PATG+
Sbjct: 5   QYISGQREKFVRLDDIDSSSSPATGM 30

>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/109 (14%), Positives = 24/109 (22%)
 Frame = -3

Query: 367 TTSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEATPVAGSTEAGTVSVPTNRSXXX 188
           TT+                                   TP + +T   T +VPT  S   
Sbjct: 123 TTAAPTTAATTTAVTTAASTSAETTTATATATSTPTTTTPTSTTTTTATTTVPTTASTTT 182

Query: 187 XXXXXXXXXXXXXXXXXXXXXXAEAGRLWGARGEGASSAPAMLSRSNSA 41
                                   A     A    A++  A  S + +A
Sbjct: 183 DTTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTSSATTA 231

>DRS1_ASPFU (Q4WRV2) ATP-dependent RNA helicase drs1 (EC 3.6.1.-)|
          Length = 830

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 180 YKSGRVERFVGTDTVPASVDPATGVASKDVVIDXXXXXXVRIYLPSPGNGTRSGRGGR 353
           ++ G+V   + TD     +D    +   + VI+        IYL   G   R+GR GR
Sbjct: 601 FREGKVAFLLATDLASRGLD----IKGVETVINYEAPQSHEIYLHRVGRTARAGRSGR 654

>PDI_ALTAL (Q00002) Protein disulfide-isomerase (EC 5.3.4.1) (PDI) (Allergen|
           Alt a 4) (Fragment)
          Length = 436

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 180 YKSGRVERFVGTDTVPASVD-PATGVAS---KDVVIDXXXXXXVRIYLPSPGN 326
           + +G+++  + ++ +P S D P T V +   KDVVID      V  Y P  G+
Sbjct: 216 FLAGKIDPSIKSEPIPESNDGPVTVVVAHNYKDVVIDNDKDVLVEFYAPWCGH 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,878,189
Number of Sequences: 219361
Number of extensions: 263018
Number of successful extensions: 898
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)