ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast50c09 |
|---|---|
| Clone Library Name | barley_pub |
>POLG_LANVT (P29837) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3414 Score = 30.8 bits (68), Expect = 0.87 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 113 DESLDRPSMGRSPELINQSRAGQGEGSGWLSVVWG 9 DE D P + +S +++ S G+GE + W +WG Sbjct: 3343 DEWRDTPYLPKSQDILCSSLVGRGERAEWAKNIWG 3377
>NEUA_HUMAN (Q8NFW8) N-acylneuraminate cytidylyltransferase (EC 2.7.7.43)| (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) Length = 434 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -2 Query: 98 RPSMGRSPELINQSRAGQGEG 36 RPS GR P+L SR GQG G Sbjct: 18 RPSRGRPPKLQRNSRGGQGRG 38
>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)| (Endo-1,4-beta-glucanase) (Cellulase) (Fragment) Length = 224 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +1 Query: 19 TDNQPLPSPCPALD*LISSGDLPIDGR--SRDSSLVNR 126 T P PSP P L+ GD+ +DG+ S D SL+ R Sbjct: 148 TQPTPSPSPTPTDSPLVKKGDVNLDGQVNSTDFSLLKR 185
>AANT_HDVU2 (Q81835) Large delta antigen (p27) (HDAg-L) [Contains: Small delta| antigen (p24) (HDAg-S)] Length = 214 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 97 DRRWAGPRS*SINPEQGRARGAVG 26 +RR AGPR +NP +G RGA G Sbjct: 141 ERRVAGPRVGGVNPLEGGTRGAPG 164
>AANT_HDVP1 (Q81842) Large delta antigen (p27) (HDAg-L) [Contains: Small delta| antigen (p24) (HDAg-S)] Length = 214 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -3 Query: 97 DRRWAGPRS*SINPEQGRARGAVG 26 +RR AGPR +NP G RGA G Sbjct: 140 ERRTAGPRPGGVNPMDGPPRGAPG 163
>AANT_HDVV3 (Q91DH9) Large delta antigen (p27) (HDAg-L) [Contains: Small delta| antigen (p24) (HDAg-S)] Length = 214 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -3 Query: 97 DRRWAGPRS*SINPEQGRARGAVG 26 +RR AGPR +NP G RGA G Sbjct: 140 ERRVAGPRPGGVNPMDGPPRGAPG 163
>AANT_HDVV1 (Q91DH7) Large delta antigen (p27) (HDAg-L) [Contains: Small delta| antigen (p24) (HDAg-S)] Length = 214 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -3 Query: 97 DRRWAGPRS*SINPEQGRARGAVG 26 +RR AGPR +NP G RGA G Sbjct: 140 ERRVAGPRPGGVNPMDGPPRGAPG 163
>AANT_HDVS2 (P25884) Large delta antigen (p27) (HDAg-L) [Contains: Small delta| antigen (p24) (HDAg-S)] Length = 214 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -3 Query: 94 RRWAGPRS*SINPEQGRARGAVG 26 RR AGPR +NP +G RGA G Sbjct: 142 RRVAGPRVGDVNPSRGGPRGAPG 164
>AANT_HDVS1 (P69619) Large delta antigen (p27) (HDAg-L) [Contains: Small delta| antigen (p24) (HDAg-S)] Length = 214 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -3 Query: 94 RRWAGPRS*SINPEQGRARGAVG 26 RR AGPR +NP +G RGA G Sbjct: 142 RRVAGPRVGDVNPSRGGPRGAPG 164
>AANT_HDV83 (P69618) Large delta antigen (p27) (HDAg-L) [Contains: Small delta| antigen (p24) (HDAg-S)] Length = 214 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -3 Query: 94 RRWAGPRS*SINPEQGRARGAVG 26 RR AGPR +NP +G RGA G Sbjct: 142 RRVAGPRVGDVNPSRGGPRGAPG 164
>PRXC_CALFU (P04963) Chloroperoxidase precursor (EC 1.11.1.10) (Chloride| peroxidase) (CPO) Length = 373 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = +1 Query: 10 PQTTDNQPLPSPCPALD*LISSGDLPIDGRS 102 P TD++ +PCPAL+ L + G +P DGR+ Sbjct: 41 PGPTDSR---APCPALNALANHGYIPHDGRA 68
>AANT_HDVV2 (Q91DH8) Large delta antigen (p27) (HDAg-L) [Contains: Small delta| antigen (p24) (HDAg-S)] Length = 214 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -3 Query: 97 DRRWAGPRS*SINPEQGRARGAVG 26 +RR AGPR +NP G RGA G Sbjct: 140 ERRVAGPRPGGVNPMXGPPRGAPG 163
>REQU_HUMAN (Q92785) Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response| zinc finger protein) (D4, zinc and double PHD fingers family 2) Length = 391 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 155 LKRKGADAPELWVDDDVGPRFPVASRATKIRRLDPD 262 L+++GA P VDDD FPV + + R L+PD Sbjct: 128 LEKRGAPDPR--VDDDSLGEFPVTNSRARKRILEPD 161
>AANT_HDVD3 (P29996) Large delta antigen (p27) (HDAg-L) [Contains: Small delta| antigen (p24) (HDAg-S)] Length = 214 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 97 DRRWAGPRS*SINPEQGRARGAVG 26 +RR AGP+ +NP +G RGA G Sbjct: 141 ERRIAGPQVGGVNPLEGGTRGAPG 164
>REQU_MOUSE (Q61103) Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response| zinc finger protein) (D4, zinc and double PHD fingers family 2) Length = 391 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +2 Query: 155 LKRKGADAPELWVDDDVGPRFPVASRATKIRRLDPD 262 L+++GA P VDDD FPV++ + R ++PD Sbjct: 128 LEKRGAPDPR--VDDDSLGEFPVSNSRARKRIIEPD 161 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,308,918 Number of Sequences: 219361 Number of extensions: 484203 Number of successful extensions: 1687 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1639 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1687 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
