>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 138      tggacgcggcgccggcgctcaagaggaagggcgcggacgcgccggagct 186
                ||||||||||||||||||| |||||||| | ||||||| ||||||||||
Sbjct: 18868200 tggacgcggcgccggcgctgaagaggaaagacgcggacccgccggagct 18868152



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 81/95 (85%), Gaps = 3/95 (3%)
 Strand = Plus / Minus

                                                                            
Query: 158      aagaggaagggcgcggacgcgccggagctttgggtggacgacgacgtcg--gcc-ccagg 214
                |||||||| |||| ||||||||||||||| ||| ||||||||| || ||  ||| || | 
Sbjct: 18867814 aagaggaaaggcgaggacgcgccggagctgtggctggacgacggcggcgcagcctccgga 18867755

                                                   
Query: 215      ttccccgtcgcctcccgcgccaccaagatccgccg 249
                ||||| ||| |||||||||||||||| ||||||||
Sbjct: 18867754 ttcccggtctcctcccgcgccaccaaaatccgccg 18867720



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 225      cctcccgcgccaccaagatccgccgcct 252
                ||||||||||||| ||||||||||||||
Sbjct: 18868104 cctcccgcgccacgaagatccgccgcct 18868077

>gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0024M06, complete sequence
          Length = 51144

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                       
Query: 158  aagaggaagggcgcggacgcgccggagctttgggtggacgacg 200
            |||||||| | || ||||||||||||||| ||| |||||||||
Sbjct: 7103 aagaggaaagtcgaggacgcgccggagctgtggctggacgacg 7145

>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004P24,
              complete sequence
          Length = 137721

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 158    aagaggaagggcgcggacgcgccggagctttgggtggacgacg 200
              |||||||| | || ||||||||||||||| ||| |||||||||
Sbjct: 107791 aagaggaaagtcgaggacgcgccggagctgtggctggacgacg 107833

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 158     aagaggaagggcgcggacgcgccggagctttgggtggacgacg 200
               |||||||| | || ||||||||||||||| ||| |||||||||
Sbjct: 7709164 aagaggaaagtcgaggacgcgccggagctgtggctggacgacg 7709122

>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 315    cggtggcggtcttcggggtggtg 337
              |||||||||||||||||||||||
Sbjct: 775458 cggtggcggtcttcggggtggtg 775480

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 158     aagaggaagggcgcggacgcgccggagctttgggtggacgacg 200
               |||||||| | || ||||||||||||||| ||| |||||||||
Sbjct: 7779251 aagaggaaagtcgaggacgcgccggagctgtggctggacgacg 7779209

>ref|XM_329546.1| Neurospora crassa OR74A hypothetical protein (NCU08502.1) partial
           mRNA
          Length = 720

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 230 cgcgccaccaagatccgccgc 250
           |||||||||||||||||||||
Sbjct: 409 cgcgccaccaagatccgccgc 429

>ref|XM_958338.1| Neurospora crassa OR74A hypothetical protein (NCU08502.1) partial
           mRNA
          Length = 720

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 230 cgcgccaccaagatccgccgc 250
           |||||||||||||||||||||
Sbjct: 409 cgcgccaccaagatccgccgc 429

>gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, complete sequence
          Length = 188519

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 325    cttcggggtggtggaggaggc 345
              |||||||||||||||||||||
Sbjct: 152278 cttcggggtggtggaggaggc 152258

>emb|BX842594.1| Neurospora crassa DNA linkage group II BAC clone B18P7
          Length = 95637

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 230   cgcgccaccaagatccgccgc 250
             |||||||||||||||||||||
Sbjct: 44585 cgcgccaccaagatccgccgc 44565

>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 268   gcctgtcgtgcccggcgcggtcgtgccgc 296
             |||||||||||| ||| ||||||||||||
Sbjct: 78978 gcctgtcgtgccgggcacggtcgtgccgc 79006

>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 268   gcctgtcgtgcccggcgcggtcgtgccgc 296
             |||||||||||| ||| ||||||||||||
Sbjct: 15486 gcctgtcgtgccgggcacggtcgtgccgc 15514

>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 268   gcctgtcgtgcccggcgcggtcgtgccgc 296
             |||||||||||| ||| ||||||||||||
Sbjct: 79144 gcctgtcgtgccgggcacggtcgtgccgc 79172

>dbj|AP006462.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-813O18, complete
             sequence
          Length = 98815

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 325   cttcggggtggtggaggaggc 345
             |||||||||||||||||||||
Sbjct: 40307 cttcggggtggtggaggaggc 40327

>emb|CT009569.17| Pig DNA sequence from clone CH242-213C10 on chromosome 17, complete
              sequence
          Length = 201723

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 31     ccgctcccctcgccctgccct 51
              |||||||||||||||||||||
Sbjct: 131285 ccgctcccctcgccctgccct 131265

>gb|DQ141104.1| Drosophila ananassae Dscam gene, partial sequence
          Length = 57036

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    ccggggacctgcccatcgac 93
             ||||||||||||||||||||
Sbjct: 37327 ccggggacctgcccatcgac 37346

>emb|AL022725.8|HS430A16 Human DNA sequence from clone RP3-430A16 on chromosome 6p24.1-25.3
             Contains part of the CDYL gene for Y chromosome-like
             chromodomain protein and a CpG island, complete sequence
          Length = 129756

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    cctcgccctgccctgctctg 57
             ||||||||||||||||||||
Sbjct: 87808 cctcgccctgccctgctctg 87827

>gb|AC154913.4| Ornithorhynchus anatinus BAC clone OABb-535A1 from chromosome unknown,
              complete sequence
          Length = 199332

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tggattgattgattagctcc 75
              ||||||||||||||||||||
Sbjct: 174752 tggattgattgattagctcc 174733

>gb|AC093178.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0091B12, complete sequence
          Length = 137568

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   ggcgcggtcgtgccgccacc 300
             ||||||||||||||||||||
Sbjct: 28653 ggcgcggtcgtgccgccacc 28634

>gb|DQ317107.1| Drosophila ananassae Dscam gene, exons 3 through 24
          Length = 47242

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    ccggggacctgcccatcgac 93
             ||||||||||||||||||||
Sbjct: 27234 ccggggacctgcccatcgac 27253

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 281     ggcgcggtcgtgccgccacc 300
               ||||||||||||||||||||
Sbjct: 6825626 ggcgcggtcgtgccgccacc 6825607

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 279     ccggcgcggtcgtgccgccaccgg 302
               ||||||||||||||||||| ||||
Sbjct: 1595881 ccggcgcggtcgtgccgcccccgg 1595858

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 321     cggtcttcggggtggtggag 340
               ||||||||||||||||||||
Sbjct: 1558548 cggtcttcggggtggtggag 1558567

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 279     ccggcgcggtcgtgccgccaccgg 302
               ||||||||| ||||||||||||||
Sbjct: 2904259 ccggcgcgggcgtgccgccaccgg 2904236



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    cccggcgcggtcgtgccgcc 297
              ||||||||||||||||||||
Sbjct: 379124 cccggcgcggtcgtgccgcc 379105

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 271     tgtcgtgcccggcgcggtcg 290
               ||||||||||||||||||||
Sbjct: 5669983 tgtcgtgcccggcgcggtcg 5669964

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 281     ggcgcggtcgtgccgccacc 300
               ||||||||||||||||||||
Sbjct: 6828912 ggcgcggtcgtgccgccacc 6828893

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 321     cggtcttcggggtggtggag 340
               ||||||||||||||||||||
Sbjct: 1234531 cggtcttcggggtggtggag 1234550


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,208,892
Number of Sequences: 3902068
Number of extensions: 2208892
Number of successful extensions: 55722
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55032
Number of HSP's gapped (non-prelim): 690
length of query: 345
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 323
effective length of database: 17,147,199,772
effective search space: 5538545526356
effective search space used: 5538545526356
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)