ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast50c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DEND_HUMAN (O94850) Dendrin 31 1.4
2BCTN7_BOVIN (P19661) Bactenecin-7 precursor (Bac7) (Cathelicidin... 30 1.9
3TONB_SERMA (P26185) Protein tonB 30 3.2
4IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2 30 3.2
5NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20) 29 4.1
6PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A me... 29 5.4
7TEGU_EBV (P03186) Large tegument protein 29 5.4
8DPOL_HHV1A (P07917) DNA polymerase (EC 2.7.7.7) 28 7.1
9HMW3_MYCGE (Q57081) Cytadherence high molecular weight protein 3... 28 7.1
10VG66_ICHV1 (Q00154) Hypothetical gene 66 protein 28 9.2
11NEST_RAT (P21263) Nestin 28 9.2
12EMIL2_HUMAN (Q9BXX0) EMILIN-2 precursor (Elastin microfibril int... 28 9.2
13LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-bind... 28 9.2

>DEND_HUMAN (O94850) Dendrin|
          Length = 657

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -1

Query: 166 GTWRGLREGQGMWEGSTGFGLARA 95
           G W GLR+GQG+  GS G G ARA
Sbjct: 229 GAW-GLRQGQGLLGGSPGCGAARA 251



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>BCTN7_BOVIN (P19661) Bactenecin-7 precursor (Bac7) (Cathelicidin-3) (PR-59)|
          Length = 190

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 90  PSARAKPNPVEPSHIPCPSRKPRHVPHREVAPRPHAQDLRRPL 218
           P  R  P P+ P  +P P   PR +P     PRP  + + RPL
Sbjct: 149 PFPRPGPRPI-PRPLPFPRPGPRPIPRPLPFPRPGPRPIPRPL 190



 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 84  LKPSARAKPNPVEPSHIPCPSRKPRHVPHREVAPRPHAQDLRRPL 218
           ++P     P P  P  +P P   PR +P     PRP  + + RPL
Sbjct: 133 IRPRPPRLPRP-RPRPLPFPRPGPRPIPRPLPFPRPGPRPIPRPL 176



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>TONB_SERMA (P26185) Protein tonB|
          Length = 247

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 90  PSARAKPNPVEPSHIPCPSRKPRHVPHREVAPRPHAQDLRRP 215
           P A  KP PV+P     P  KP+    ++V P P   + R P
Sbjct: 91  PKAIVKPEPVKPK----PKPKPKPKVEKQVKPEPKKVEPREP 128



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>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 90  PSARAKPNPVEPSH-IPCPSRKPRHVPHREVAPRP 191
           P A A   P  PS   P PS+ PR  P  + APRP
Sbjct: 103 PKAPAAQQPAAPSAPAPAPSQGPRPTPGPKPAPRP 137



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>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)|
          Length = 268

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 90  PSARAKPNPVEPSHIPCPSRKPRHVPHREVAPRPHAQDLRRP 215
           P  R+ P+P  PS  P PS  P   P     P P  +    P
Sbjct: 154 PPRRSLPSPPSPSPSPSPSPSPSPSPRSTPIPHPRKRSPASP 195



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>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Apoptosis-associated
           nuclear protein) (Proline- and histidine-rich protein)
           (Proline- and glutamine-rich protein) (PQ-rich protein)
          Length = 259

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = +3

Query: 87  KPSARAKPNPVEPSHIPCPSRKPRHVPHREVAPRPHAQDLRRPLLH 224
           +P  + KP P +    P P   P   PH    P PH    + P  H
Sbjct: 194 QPQPQPKPQPQQLHPYPHPHPHPHSHPHSHPHPHPHPHPHQIPHPH 239



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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 90  PSARAKPNPVEPSHIPCPSRKPRHVPHREVAP 185
           PSA   P+P+ P   P PS  P   P +++ P
Sbjct: 581 PSAARAPSPLPPQQQPLPSATPAPPPAQQLPP 612



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>DPOL_HHV1A (P07917) DNA polymerase (EC 2.7.7.7)|
          Length = 1235

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 114  PVEPSHIPCPSRKPRHVPHREVAP 185
            P  P+ +PCP+++PR  P     P
Sbjct: 1105 PAPPAALPCPAKRPRETPSHADPP 1128



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>HMW3_MYCGE (Q57081) Cytadherence high molecular weight protein 3 (Cytadherence|
           accessory protein 3) (Accessory adhesin protein 3) (P69)
          Length = 599

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 16/53 (30%)
 Frame = +3

Query: 81  LLKPSARAKPNPVEPSHI---PCPSRKP-------------RHVPHREVAPRP 191
           +++P    KP     SH+   P P  KP             +HVPH EV P+P
Sbjct: 267 IVEPKIEPKPEVKHVSHVEIQPKPEVKPVVDSVPEVKQPEVKHVPHVEVQPKP 319



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>VG66_ICHV1 (Q00154) Hypothetical gene 66 protein|
          Length = 411

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 141 PSRKPRHVPHREVAPRPHAQDLRRPLLHL 227
           P+ +P  VP R V PRP    L  PL  L
Sbjct: 48  PTGRPIPVPRRRVRPRPAEDQLEEPLEEL 76



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>NEST_RAT (P21263) Nestin|
          Length = 1805

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 138 CPSRKPRHVPHREVAPRPHAQDLRRPL 218
           C  R+P   PHR   P P  +DL R L
Sbjct: 157 CAPRRPPAPPHRIPGPAPEVEDLARRL 183



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>EMIL2_HUMAN (Q9BXX0) EMILIN-2 precursor (Elastin microfibril interface-located|
           protein 2) (Elastin microfibril interfacer 2) (Protein
           FOAP-10)
          Length = 1053

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 87  KPSARAKPNPVEPSHIPCPSRKPRHVPHREVAPRPHAQDLRRPLL 221
           +PSA+A P+P  P+  P    +P   P R   P       RRP+L
Sbjct: 783 QPSAKA-PSPPPPAEAPKEPLQPEPAPPRPSGPATAEDPGRRPVL 826



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>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4|
           precursor (LTBP-4)
          Length = 1666

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 90  PSARAKPNPVEPSHIPCPSRKPRHVPHREVAPRPHAQDLRRP 215
           P  + +P P  P   P P  +PR  P     PRP  +   RP
Sbjct: 515 PGPQPEPRP-RPEPRPRPESRPRPEPRPRPEPRPQPESQPRP 555


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,935,304
Number of Sequences: 219361
Number of extensions: 428704
Number of successful extensions: 2109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2043
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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