>CHLP_SYNY3 (Q55087) Geranylgeranyl hydrogenase|
          Length = 407

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = +2

Query: 287 ETVLIERKMDICKPCGGAIPLCMVSEFDLPLDL 385
           ET L ERK+D  KPCGGAIPLCMV EFDLP ++
Sbjct: 27  ETYLFERKLDNAKPCGGAIPLCMVDEFDLPPEI 59

>CDAN1_HUMAN (Q8IWY9) Codanin-1|
          Length = 1226

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
 Frame = -1

Query: 179 PRGSRGAATSCRPPA--------APGRRKGGRWRAPWPRTRRG 75
           PRGSRGA +   PP         AP  R+GGR R P P   RG
Sbjct: 90  PRGSRGARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPARERG 132

>BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase|
          Length = 391

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 323 KPCGGAIPLCMVSEFDLP 376
           KPCGGAIP  ++ +FD+P
Sbjct: 38  KPCGGAIPPRLIRDFDIP 55

>MCHR1_MOUSE (Q8JZL2) Melanin-concentrating hormone receptor 1 (MCH receptor 1)|
           (MCHR-1) (MCH-R1) (MCH1R) (MCH-1R) (MCHR) (G-protein
           coupled receptor 24) (Somatostatin receptor-like
           protein) (SLC-1)
          Length = 423

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
 Frame = -1

Query: 176 RGSRGAATSCRPP------AAPGRRKGGRWRAPWP 90
           RGSRG       P       APG+  GGRWR P P
Sbjct: 17  RGSRGCQAVEEDPFLDCGAQAPGQGGGGRWRLPQP 51

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = -3

Query: 144 PAGRARQEEGRKVARAVAADEERDVILAPVSPSAGSSSTCGGEGA 10
           PA R R         AVAA   R    +P SP+AG  S  GG GA
Sbjct: 203 PAARPRTPAPPAQPAAVAAAPARRGPASPASPAAGPVSAPGGGGA 247

>ADA2A_CAVPO (Q60474) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)|
           (Alpha-2A adrenoreceptor) (Alpha-2AAR)
          Length = 450

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -1

Query: 191 GSTSPRGSRGAATSCRPPAAPGRRKGG-----RWRAPWPRTRRGTSFL 63
           G + PR + GAA S    + PG  +GG     RWR    R +R T  L
Sbjct: 329 GDSLPRRAPGAAGSGTSGSGPGEERGGGAKASRWRGRQNREKRFTFVL 376

>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = -3

Query: 144 PAGRARQEEGRKVARAVAADEERDVILAPVSPSAGSSSTCGGEGA 10
           PA R R         AVAA   R    +P SP+AG  S  GG GA
Sbjct: 211 PAARPRTPAPPAQPAAVAAAPARRGPASPASPAAGPVSAPGGGGA 255

>PJA1_HUMAN (Q8NG27) Ubiquitin protein ligase Praja1 (EC 6.3.2.-) (RING finger|
           protein 70)
          Length = 643

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -3

Query: 180 AARVTRS-CDLLPPAGRARQE--EGRKVARAVAADEERDVILAPVSPSAGSSSTCGG 19
           AAR + S  D LP +  A Q   EG+   +  +++ ER     P  PS    S CGG
Sbjct: 187 AARCSASRADFLPQSSVASQSSSEGKLATKGDSSERERREQNLPARPSRAPVSICGG 243

>GP123_HUMAN (Q86SQ6) Probable G-protein coupled receptor 123|
          Length = 1280

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -1

Query: 194 WGSTSPRGSRGAATSCRPPAAPGRRKGG 111
           WGSTSPRG   A +    P A G R GG
Sbjct: 222 WGSTSPRGQ--AVSLVGGPTAGGSRLGG 247

>MPA53_PHAAQ (P56166) Major pollen allergen Pha a 5.3 precursor (Pha a 5) (Clone|
           29)
          Length = 294

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +1

Query: 112 PPFLLPGAAGGRQEVAAPRDPRG 180
           PP +LP AAGG   VAA  D RG
Sbjct: 268 PPQVLPLAAGGAATVAAASDSRG 290

>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/39 (48%), Positives = 20/39 (51%)
 Frame = -1

Query: 191  GSTSPRGSRGAATSCRPPAAPGRRKGGRWRAPWPRTRRG 75
            G  +PRG RGA     PP A G   GGR  AP P   RG
Sbjct: 1104 GGAAPRG-RGAP----PPGAGGPPGGGRGGAPPPGGMRG 1137

>ALL12_ARAHY (P43238) Allergen Ara h 1, clone P41B precursor (Ara h I)|
          Length = 626

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
 Frame = -1

Query: 191 GSTSPRGSRGAATSCRPPA-------APGRRKGGRWRAPWPRTR 81
           G+T+ R   G  T  R P         P R +GGRW    PR R
Sbjct: 80  GTTNQRSPPGERTRGRQPGDYDDDRRQPRREEGGRWGPAGPRER 123

>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 191  GSTSPRGSRGAATSCRPPAAPG 126
            GS  P+G RG      PP APG
Sbjct: 1024 GSPGPKGDRGETGPAGPPGAPG 1045

>DOS_HUMAN (Q8N350) Protein Dos|
          Length = 725

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 167 RGAATSCRPPAAPGRRKGGRWRAPWPRTRR 78
           RGA     PPAAP R +  R    WPR  R
Sbjct: 531 RGAGDDTEPPAAPARPRSPR---AWPRRPR 557

>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
 Frame = -1

Query: 191 GSTSPRGSRGAATSCRPPAAPG----RRKGGRWRAPWP 90
           G   PRG+RG      PP  PG     R G R    WP
Sbjct: 360 GPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWP 397

>CI082_HUMAN (Q9H8G2) Protein C9orf82|
          Length = 361

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 135 RARQEEGRKVARAVAADEERDVILAPVSPSAGSSSTCGGEG 13
           + R+   ++ A A+AA    D++ A  S S+GS+S CG  G
Sbjct: 10  KRRKRSSQEAAAALAAP---DIVPALASGSSGSTSGCGSAG 47

>NDF2_MOUSE (Q62414) Neurogenic differentiation factor 2 (NeuroD2)|
           (NeuroD-related factor) (NDRF)
          Length = 383

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -1

Query: 194 WGS---TSPRGSRGAATSCRPPAAPGRRKGGRWRAPWPRTRRGTSFLP 60
           WG      PR  +G A   +PP APG    G  RA  P + RG   +P
Sbjct: 21  WGDGDDDEPRSDKGDAPP-QPPPAPGSGAPGPARAAKPVSLRGGEEIP 67

>DAB2_HUMAN (P98082) Disabled homolog 2 (Differentially expressed protein 2)|
           (DOC-2)
          Length = 770

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 162 SCDLLPPAGRARQEEGRKVARAVAAD-EERDVILAPVSPSAGSSSTCG 22
           S  ++PP    +   GR+ A++ A D    D+   PVS  +G +S  G
Sbjct: 427 SIAIIPPPQSTKPGRGRRTAKSSANDLLASDIFAPPVSEPSGQASPTG 474

>CO6A3_HUMAN (P12111) Collagen alpha-3(VI) chain precursor|
          Length = 3176

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 191  GSTSPRGSRGAATSCRPPAAPGRRKGGRWRAP-WPRTRRGTS 69
            G+T P+G RG   +  PP   G++    +  P  PR  RG S
Sbjct: 2332 GTTGPKGIRGRRGNSGPPGIVGQKGRPGYPGPAGPRGNRGDS 2373

>ZN696_HUMAN (Q9H7X3) Zinc finger protein 696|
          Length = 374

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 173 GSRGAATSCRPPAAPGRRKGGRWRA-PWPRTRRGTSF 66
           G  G  +   P A PG   GG W+  P+P    G SF
Sbjct: 98  GQSGLESDVPPNAGPGAEGGGSWKGRPFPCGACGRSF 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,070,653
Number of Sequences: 219361
Number of extensions: 568231
Number of successful extensions: 3506
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3496
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)