ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast50b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GUN9_ARATH (Q9C9H5) Probable family 9 endoglucanase At1g71380 pr... 30 2.7
2PROC_SHIFL (P0A9L9) Pyrroline-5-carboxylate reductase (EC 1.5.1.... 30 3.5
3PROC_ECOLI (P0A9L8) Pyrroline-5-carboxylate reductase (EC 1.5.1.... 30 3.5

>GUN9_ARATH (Q9C9H5) Probable family 9 endoglucanase At1g71380 precursor (EC|
           3.2.1.4)
          Length = 484

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 369 KVLGGGXPADVFMWRNKHISAGVL 440
           K LGGG   D+F W NK+  A VL
Sbjct: 257 KSLGGGDQPDIFSWDNKYAGAYVL 280



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>PROC_SHIFL (P0A9L9) Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (P5CR) (P5C|
           reductase)
          Length = 269

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
 Frame = +3

Query: 333 MFRLFGR-----EQPIHKVLG--GGXPADVFMWRNKHISAGVLGG 446
           +FR FG      E  IH V+G  G  PA VFM+      A VLGG
Sbjct: 150 IFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGG 194



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>PROC_ECOLI (P0A9L8) Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (P5CR) (P5C|
           reductase)
          Length = 269

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
 Frame = +3

Query: 333 MFRLFGR-----EQPIHKVLG--GGXPADVFMWRNKHISAGVLGG 446
           +FR FG      E  IH V+G  G  PA VFM+      A VLGG
Sbjct: 150 IFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGG 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,574,699
Number of Sequences: 219361
Number of extensions: 449319
Number of successful extensions: 1625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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