>ref|XM_469706.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1731

 Score =  170 bits (86), Expect = 1e-39
 Identities = 107/114 (93%)
 Strand = Plus / Plus

                                                                       
Query: 112 tggcgacggggccgggcagccgcgtgacgcggtacgccaagtcgacggcggcgtctgtca 171
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 121 tggcgacggggccaggcagccgcgtgacgcggtacgccaagtcgacggcggcgtcggtga 180

                                                                 
Query: 172 cgccggtgcgccccggcaagactcacgagctctcggcgctggacaacgccatgg 225
           ||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 181 cgccggtccgccccggcaagacgcacgcgctgtcggcgctggacaacgccatgg 234

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  170 bits (86), Expect = 1e-39
 Identities = 107/114 (93%)
 Strand = Plus / Minus

                                                                            
Query: 112      tggcgacggggccgggcagccgcgtgacgcggtacgccaagtcgacggcggcgtctgtca 171
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 30323575 tggcgacggggccaggcagccgcgtgacgcggtacgccaagtcgacggcggcgtcggtga 30323516

                                                                      
Query: 172      cgccggtgcgccccggcaagactcacgagctctcggcgctggacaacgccatgg 225
                ||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 30323515 cgccggtccgccccggcaagacgcacgcgctgtcggcgctggacaacgccatgg 30323462

>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete
              sequence
          Length = 130359

 Score =  170 bits (86), Expect = 1e-39
 Identities = 107/114 (93%)
 Strand = Plus / Minus

                                                                          
Query: 112    tggcgacggggccgggcagccgcgtgacgcggtacgccaagtcgacggcggcgtctgtca 171
              ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 115255 tggcgacggggccaggcagccgcgtgacgcggtacgccaagtcgacggcggcgtcggtga 115196

                                                                    
Query: 172    cgccggtgcgccccggcaagactcacgagctctcggcgctggacaacgccatgg 225
              ||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 115195 cgccggtccgccccggcaagacgcacgcgctgtcggcgctggacaacgccatgg 115142

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  170 bits (86), Expect = 1e-39
 Identities = 107/114 (93%)
 Strand = Plus / Minus

                                                                            
Query: 112      tggcgacggggccgggcagccgcgtgacgcggtacgccaagtcgacggcggcgtctgtca 171
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 30414997 tggcgacggggccaggcagccgcgtgacgcggtacgccaagtcgacggcggcgtcggtga 30414938

                                                                      
Query: 172      cgccggtgcgccccggcaagactcacgagctctcggcgctggacaacgccatgg 225
                ||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 30414937 cgccggtccgccccggcaagacgcacgcgctgtcggcgctggacaacgccatgg 30414884

>emb|X79983.1|PRVIRDNA Pseudorabies Virus DNA
          Length = 4093

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 205 cggcgctggacaacgccatgg 225
           |||||||||||||||||||||
Sbjct: 747 cggcgctggacaacgccatgg 767

>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 205   cggcgctggacaacgccatgg 225
             |||||||||||||||||||||
Sbjct: 58742 cggcgctggacaacgccatgg 58722

>emb|X95710.1|MMULGENES Pseudorabies virus UL23, UL24, UL25, UL26, UL26.5, and UL44-gC genes
          Length = 4523

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 205  cggcgctggacaacgccatgg 225
            |||||||||||||||||||||
Sbjct: 3339 cggcgctggacaacgccatgg 3319

>gb|AC160121.2| Mus musculus BAC clone RP23-402P14 from chromosome 13, complete sequence
          Length = 183152

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     cccctctccttccctctgca 62
              ||||||||||||||||||||
Sbjct: 179666 cccctctccttccctctgca 179685

>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
          Length = 355714

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 41     cccccctctccttccctctgcacg 64
              ||||||||||| ||||||||||||
Sbjct: 253844 cccccctctccctccctctgcacg 253821

>gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, complete sequence
          Length = 203276

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  ggcgacggggccgggcagcc 132
            ||||||||||||||||||||
Sbjct: 7875 ggcgacggggccgggcagcc 7894

>gb|AC102368.6| Mus musculus chromosome 14, clone RP23-220D8, complete sequence
          Length = 208781

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    ggcgacggggccgggcagcc 132
              ||||||||||||||||||||
Sbjct: 170703 ggcgacggggccgggcagcc 170722

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 170     cacgccggtgcgccccggca 189
               ||||||||||||||||||||
Sbjct: 1093182 cacgccggtgcgccccggca 1093163

>gb|AY972055.1| Gordonia alkanivorans strain CC-JG39 DNA gyrase subunit B (gyrB)
           gene, partial cds
          Length = 1239

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  cggcgatcccaacggcgacg 107
           ||||||||||||||||||||
Sbjct: 328 cggcgatcccaacggcgacg 347

>gb|AY972054.1| Gordonia alkanivorans strain DSM 44499 DNA gyrase subunit B (gyrB)
           gene, partial cds
          Length = 1229

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  cggcgatcccaacggcgacg 107
           ||||||||||||||||||||
Sbjct: 318 cggcgatcccaacggcgacg 337

>dbj|AB075555.1| Gordonia alkanivorans gyrB gene for DNA gyrase subunit B, partial
           cds
          Length = 1272

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  cggcgatcccaacggcgacg 107
           ||||||||||||||||||||
Sbjct: 330 cggcgatcccaacggcgacg 349

>dbj|AB075553.1| Gordonia alkanivorans gyrB gene for DNA gyrase subunit B, partial
           cds
          Length = 1272

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  cggcgatcccaacggcgacg 107
           ||||||||||||||||||||
Sbjct: 330 cggcgatcccaacggcgacg 349

>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 6       gaaccagactgcgcccccgg 25
               ||||||||||||||||||||
Sbjct: 2051389 gaaccagactgcgcccccgg 2051370


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,217,072
Number of Sequences: 3902068
Number of extensions: 1217072
Number of successful extensions: 30534
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30383
Number of HSP's gapped (non-prelim): 151
length of query: 232
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 210
effective length of database: 17,147,199,772
effective search space: 3600911952120
effective search space used: 3600911952120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)