| Clone Name | bast50b08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide oxidoreductase (PCR) Length = 1490 Score = 511 bits (258), Expect = e-142 Identities = 272/274 (99%), Gaps = 2/274 (0%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 565 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 625 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 626 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 685 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 686 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggc- 744 Query: 422 aacagc-acacgctggcgggcaacgtgccgccca 454 |||||| ||||||||||||||||||||||||||| Sbjct: 745 aacagcaacacgctggcgggcaacgtgccgccca 778 Score = 331 bits (167), Expect = 1e-87 Identities = 170/171 (99%) Strand = Plus / Plus Query: 15 gcagcacagtgcactcgagttcgagctcgttgaactcctgcagtgcagtgctagctagcg 74 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11 gcagcacagtgcactcgagttcgagctcgttgaactcctgcagtgcagtgctagctagcg 70 Query: 75 acagtccaagctcaccgtcacccatggctctccagcttctcccctccaccctctccgtcc 134 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 71 acagtccaagctcaccgtcatccatggctctccagcttctcccctccaccctctccgtcc 130 Query: 135 ccaagaagggcagcagcatgggcgcagtggcggtgaaggacacggcggcgt 185 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 ccaagaagggcagcagcatgggcgcagtggcggtgaaggacacggcggcgt 181
>emb|X76532.1|TAPWR5PI Triticum aestivium pWR5 RNA for protochlorophyilide reductase Length = 1484 Score = 440 bits (222), Expect = e-120 Identities = 263/274 (95%), Gaps = 2/274 (0%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 |||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |||| Sbjct: 485 gcgtccggcagttcgtggatgcgttccgccgcgcagagatgccgctggacgtgctcgtgt 544 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 545 gcaacgccgccatttaccgccccacggcgcgcacgccgaccttcaccgccgacgggcacg 604 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 605 agatgagcgtgggcgtgaaccacctcggccacttcctgctcgcccgcctcctcatggagg 664 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 665 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccatcaccggc- 723 Query: 422 aacagc-acacgctggcgggcaacgtgccgccca 454 |||||| ||||||||||||||||||||||||||| Sbjct: 724 aacagcaacacgctggcgggcaacgtgccgccca 757 Score = 157 bits (79), Expect = 4e-35 Identities = 97/103 (94%) Strand = Plus / Plus Query: 83 agctcaccgtcacccatggctctccagcttctcccctccaccctctccgtccccaagaag 142 |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 58 agctcaccgtcatccatggctctccagctcctcccctccaccctctccgtccccaagaag 117 Query: 143 ggcagcagcatgggcgcagtggcggtgaaggacacggcggcgt 185 || |||||||||||||| | ||| ||||||||||||||||||| Sbjct: 118 ggtagcagcatgggcgcggcggcagtgaaggacacggcggcgt 160
>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase Length = 1146 Score = 319 bits (161), Expect = 4e-84 Identities = 245/273 (89%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 |||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 190 gcgtccggcagttcgtggacgccttccgccgcgccgagatgccgctggacgtgctggtgt 249 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 ||||||||||||||||||| ||||||||||||| |||||| |||||||| || ||| || Sbjct: 250 gcaacgccgccatctaccgccccacggcgcgcaagccgacgttcaccgctgagggggtcg 309 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 |||||||||||||||| |||||||| ||||||||||| || || || || ||| |||||| Sbjct: 310 agatgagcgtgggcgtcaaccacctcggccacttcctcctggcacgtctgctcctggagg 369 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 |||| ||||||||||||||||||||||||||| | |||||||||||||| || ||||||| Sbjct: 370 acctgcagaagtccgactacccgtcccgccgcctcgtcatcgtcggctcgatcaccggca 429 Query: 422 aacagcacacgctggcgggcaacgtgccgccca 454 | | ||||||| ||||||||||||||||||| Sbjct: 430 acgacaacacgctcgcgggcaacgtgccgccca 462
>ref|XM_474360.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 192 bits (97), Expect = 7e-46 Identities = 205/241 (85%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 ||||||| |||||||| ||| ||||| ||| ||| |||||||| || | |||||||| Sbjct: 410 gcgtccgccagttcgtggacaacttccggcgctccggcatgccgctcgacgcgctggtgt 469 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||| Sbjct: 470 gcaacgccgccatctaccggccgacggcgcggcagccgacgttcaccgccgacgggtacg 529 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 |||||||||| || ||||||||||||||||||||||| |||||||||||| | | || | Sbjct: 530 agatgagcgtcggggtgaaccacctgggccacttcctcctcgcccgcctcatgctcgacg 589 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 ||||| |||| |||||||||||||| || || | ||||| |||||||||| ||||||| Sbjct: 590 acctcaagaaatccgactacccgtcgcggcggctcatcatcctcggctccatcaccggca 649 Query: 422 a 422 | Sbjct: 650 a 650
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 192 bits (97), Expect = 7e-46 Identities = 205/241 (85%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 ||||||| |||||||| ||| ||||| ||| ||| |||||||| || | |||||||| Sbjct: 4352 gcgtccgccagttcgtggacaacttccggcgctccggcatgccgctcgacgcgctggtgt 4411 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||| Sbjct: 4412 gcaacgccgccatctaccggccgacggcgcggcagccgacgttcaccgccgacgggtacg 4471 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 |||||||||| || ||||||||||||||||||||||| |||||||||||| | | || | Sbjct: 4472 agatgagcgtcggggtgaaccacctgggccacttcctcctcgcccgcctcatgctcgacg 4531 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 ||||| |||| |||||||||||||| || || | ||||| |||||||||| ||||||| Sbjct: 4532 acctcaagaaatccgactacccgtcgcggcggctcatcatcctcggctccatcaccggca 4591 Query: 422 a 422 | Sbjct: 4592 a 4592
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 192 bits (97), Expect = 7e-46 Identities = 205/241 (85%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 ||||||| |||||||| ||| ||||| ||| ||| |||||||| || | |||||||| Sbjct: 34698790 gcgtccgccagttcgtggacaacttccggcgctccggcatgccgctcgacgcgctggtgt 34698849 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||| Sbjct: 34698850 gcaacgccgccatctaccggccgacggcgcggcagccgacgttcaccgccgacgggtacg 34698909 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 |||||||||| || ||||||||||||||||||||||| |||||||||||| | | || | Sbjct: 34698910 agatgagcgtcggggtgaaccacctgggccacttcctcctcgcccgcctcatgctcgacg 34698969 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 ||||| |||| |||||||||||||| || || | ||||| |||||||||| ||||||| Sbjct: 34698970 acctcaagaaatccgactacccgtcgcggcggctcatcatcctcggctccatcaccggca 34699029 Query: 422 a 422 | Sbjct: 34699030 a 34699030
>dbj|AK104855.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B11, full insert sequence Length = 1384 Score = 192 bits (97), Expect = 7e-46 Identities = 205/241 (85%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 ||||||| |||||||| ||| ||||| ||| ||| |||||||| || | |||||||| Sbjct: 482 gcgtccgccagttcgtggacaacttccggcgctccggcatgccgctcgacgcgctggtgt 541 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||| Sbjct: 542 gcaacgccgccatctaccggccgacggcgcggcagccgacgttcaccgccgacgggtacg 601 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 |||||||||| || ||||||||||||||||||||||| |||||||||||| | | || | Sbjct: 602 agatgagcgtcggggtgaaccacctgggccacttcctcctcgcccgcctcatgctcgacg 661 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 ||||| |||| |||||||||||||| || || | ||||| |||||||||| ||||||| Sbjct: 662 acctcaagaaatccgactacccgtcgcggcggctcatcatcctcggctccatcaccggca 721 Query: 422 a 422 | Sbjct: 722 a 722
>dbj|AK103943.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G12, full insert sequence Length = 1384 Score = 192 bits (97), Expect = 7e-46 Identities = 205/241 (85%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 ||||||| |||||||| ||| ||||| ||| ||| |||||||| || | |||||||| Sbjct: 482 gcgtccgccagttcgtggacaacttccggcgctccggcatgccgctcgacgcgctggtgt 541 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||| Sbjct: 542 gcaacgccgccatctaccggccgacggcgcggcagccgacgttcaccgccgacgggtacg 601 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 |||||||||| || ||||||||||||||||||||||| |||||||||||| | | || | Sbjct: 602 agatgagcgtcggggtgaaccacctgggccacttcctcctcgcccgcctcatgctcgacg 661 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 ||||| |||| |||||||||||||| || || | ||||| |||||||||| ||||||| Sbjct: 662 acctcaagaaatccgactacccgtcgcggcggctcatcatcctcggctccatcaccggca 721 Query: 422 a 422 | Sbjct: 722 a 722
>dbj|AK103940.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G08, full insert sequence Length = 1384 Score = 192 bits (97), Expect = 7e-46 Identities = 205/241 (85%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 ||||||| |||||||| ||| ||||| ||| ||| |||||||| || | |||||||| Sbjct: 482 gcgtccgccagttcgtggacaacttccggcgctccggcatgccgctcgacgcgctggtgt 541 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||| Sbjct: 542 gcaacgccgccatctaccggccgacggcgcggcagccgacgttcaccgccgacgggtacg 601 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 |||||||||| || ||||||||||||||||||||||| |||||||||||| | | || | Sbjct: 602 agatgagcgtcggggtgaaccacctgggccacttcctcctcgcccgcctcatgctcgacg 661 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 ||||| |||| |||||||||||||| || || | ||||| |||||||||| ||||||| Sbjct: 662 acctcaagaaatccgactacccgtcgcggcggctcatcatcctcggctccatcaccggca 721 Query: 422 a 422 | Sbjct: 722 a 722
>dbj|AK065236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H23, full insert sequence Length = 1385 Score = 192 bits (97), Expect = 7e-46 Identities = 205/241 (85%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 ||||||| |||||||| ||| ||||| ||| ||| |||||||| || | |||||||| Sbjct: 483 gcgtccgccagttcgtggacaacttccggcgctccggcatgccgctcgacgcgctggtgt 542 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||| Sbjct: 543 gcaacgccgccatctaccggccgacggcgcggcagccgacgttcaccgccgacgggtacg 602 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 |||||||||| || ||||||||||||||||||||||| |||||||||||| | | || | Sbjct: 603 agatgagcgtcggggtgaaccacctgggccacttcctcctcgcccgcctcatgctcgacg 662 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 ||||| |||| |||||||||||||| || || | ||||| |||||||||| ||||||| Sbjct: 663 acctcaagaaatccgactacccgtcgcggcggctcatcatcctcggctccatcaccggca 722 Query: 422 a 422 | Sbjct: 723 a 723
>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence Length = 100836 Score = 192 bits (97), Expect = 7e-46 Identities = 205/241 (85%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 ||||||| |||||||| ||| ||||| ||| ||| |||||||| || | |||||||| Sbjct: 96714 gcgtccgccagttcgtggacaacttccggcgctccggcatgccgctcgacgcgctggtgt 96773 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||| Sbjct: 96774 gcaacgccgccatctaccggccgacggcgcggcagccgacgttcaccgccgacgggtacg 96833 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 |||||||||| || ||||||||||||||||||||||| |||||||||||| | | || | Sbjct: 96834 agatgagcgtcggggtgaaccacctgggccacttcctcctcgcccgcctcatgctcgacg 96893 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 ||||| |||| |||||||||||||| || || | ||||| |||||||||| ||||||| Sbjct: 96894 acctcaagaaatccgactacccgtcgcggcggctcatcatcctcggctccatcaccggca 96953 Query: 422 a 422 | Sbjct: 96954 a 96954
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 192 bits (97), Expect = 7e-46 Identities = 205/241 (85%) Strand = Plus / Plus Query: 182 gcgtccggcagttcgttgacgcgttccgccgcgccgagatgccgctggatgtgctggtgt 241 ||||||| |||||||| ||| ||||| ||| ||| |||||||| || | |||||||| Sbjct: 41810 gcgtccgccagttcgtggacaacttccggcgctccggcatgccgctcgacgcgctggtgt 41869 Query: 242 gcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgccgacgggcacg 301 |||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||| Sbjct: 41870 gcaacgccgccatctaccggccgacggcgcggcagccgacgttcaccgccgacgggtacg 41929 Query: 302 agatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgcctcctcatggagg 361 |||||||||| || ||||||||||||||||||||||| |||||||||||| | | || | Sbjct: 41930 agatgagcgtcggggtgaaccacctgggccacttcctcctcgcccgcctcatgctcgacg 41989 Query: 362 acctccagaagtccgactacccgtcccgccgcatggtcatcgtcggctccattaccggca 421 ||||| |||| |||||||||||||| || || | ||||| |||||||||| ||||||| Sbjct: 41990 acctcaagaaatccgactacccgtcgcggcggctcatcatcctcggctccatcaccggca 42049 Query: 422 a 422 | Sbjct: 42050 a 42050
>gb|AY106314.1| Zea mays PCO151862 mRNA sequence Length = 1009 Score = 137 bits (69), Expect = 4e-29 Identities = 129/149 (86%) Strand = Plus / Plus Query: 274 acgccgaccttcaccgccgacgggcacgagatgagcgtgggcgtgaaccacctgggccac 333 |||||||| ||||| || ||||| ||||||||||||| ||||| ||||||||||||||| Sbjct: 76 acgccgacgttcacggcggacggatacgagatgagcgtcggcgtcaaccacctgggccac 135 Query: 334 ttcctgctcgcccgcctcctcatggaggacctccagaagtccgactacccgtcccgccgc 393 ||||| || || ||||| ||| |||| ||| | ||||||||||||||||||||||||||| Sbjct: 136 ttcctcctggcgcgcctgctcctggacgacatgcagaagtccgactacccgtcccgccgc 195 Query: 394 atggtcatcgtcggctccattaccggcaa 422 | ||||| |||||||||| |||||||| Sbjct: 196 ctcatcatcctcggctccatcaccggcaa 224
>gb|AY862405.1| Musa acuminata NADPH-protochlorophyllide oxidoreductase gene, complete cds Length = 1619 Score = 99.6 bits (50), Expect = 8e-18 Identities = 95/110 (86%) Strand = Plus / Plus Query: 232 gtgctggtgtgcaacgccgccatctaccggcccacggcgcgcacgccgaccttcaccgcc 291 ||||| |||||||| || || |||||||||||||| || ||||||||||| | ||| ||| Sbjct: 673 gtgctcgtgtgcaatgcggcgatctaccggcccaccgcccgcacgccgacgtacacggcc 732 Query: 292 gacgggcacgagatgagcgtgggcgtgaaccacctgggccacttcctgct 341 |||||| ||||||||||||| ||||| |||||||| || || |||||||| Sbjct: 733 gacgggtacgagatgagcgtcggcgtcaaccacctcgggcatttcctgct 782
>emb|X84738.1|HVNADPHPO H.vulgare mRNA for NADPH-protochlorophyllide oxidoreductase Length = 1345 Score = 87.7 bits (44), Expect = 3e-14 Identities = 140/172 (81%) Strand = Plus / Plus Query: 281 ccttcaccgccgacgggcacgagatgagcgtgggcgtgaaccacctgggccacttcctgc 340 |||||||||| ||||| |||||||||||| ||||| |||||||| ||||||||||| | Sbjct: 590 ccttcaccgcggacggcttcgagatgagcgtcggcgtcaaccacctcggccacttcctcc 649 Query: 341 tcgcccgcctcctcatggaggacctccagaagtccgactacccgtcccgccgcatggtca 400 |||||||| ||| | ||||||||| || ||||||||||| ||| ||| | ||| Sbjct: 650 tcgcccgcgagctcctcgaggacctcaaggcctccgactacccctccaagcgcctcatca 709 Query: 401 tcgtcggctccattaccggcaaacagcacacgctggcgggcaacgtgccgcc 452 ||||||||||||||||||| || | ||||||| || || ||||||||||| Sbjct: 710 tcgtcggctccattaccgggaacacgaacacgcttgccgggaacgtgccgcc 761
>ref|NM_197169.1| Oryza sativa (japonica cultivar-group) putative dehydrogenase (OSJNBa0017E08.8), mRNA Length = 1564 Score = 75.8 bits (38), Expect = 1e-10 Identities = 97/114 (85%), Gaps = 2/114 (1%) Strand = Plus / Plus Query: 236 tggtgtgcaacgccgccatctaccggcccacggcgc-gcacgccgaccttcaccgccgac 294 ||||||||||||||||| | |||| |||||| || ||| ||||| ||||||||||||| Sbjct: 571 tggtgtgcaacgccgccgtgtaccagcccaccgccaagca-gccgagcttcaccgccgac 629 Query: 295 gggcacgagatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgc 348 || |||||||||||| ||||| |||||||| || |||||||| ||||||||| Sbjct: 630 ggcttcgagatgagcgtcggcgtcaaccacctcgggcacttcctcctcgcccgc 683 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 398 tcatcgtcggctccattaccggcaaacagcacacgctggcgggcaacgtgccgcc 452 |||||||||||||||| ||||| || | ||||||||||||| ||||||||||| Sbjct: 733 tcatcgtcggctccatcaccgggaacacgaacacgctggcggggaacgtgccgcc 787
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 75.8 bits (38), Expect = 1e-10 Identities = 97/114 (85%), Gaps = 2/114 (1%) Strand = Plus / Minus Query: 236 tggtgtgcaacgccgccatctaccggcccacggcgc-gcacgccgaccttcaccgccgac 294 ||||||||||||||||| | |||| |||||| || ||| ||||| ||||||||||||| Sbjct: 120466 tggtgtgcaacgccgccgtgtaccagcccaccgccaagca-gccgagcttcaccgccgac 120408 Query: 295 gggcacgagatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgc 348 || |||||||||||| ||||| |||||||| || |||||||| ||||||||| Sbjct: 120407 ggcttcgagatgagcgtcggcgtcaaccacctcgggcacttcctcctcgcccgc 120354 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 428 acacgctggcgggcaacgtgccgcc 452 ||||||||||||| ||||||||||| Sbjct: 119642 acacgctggcggggaacgtgccgcc 119618
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 75.8 bits (38), Expect = 1e-10 Identities = 97/114 (85%), Gaps = 2/114 (1%) Strand = Plus / Plus Query: 236 tggtgtgcaacgccgccatctaccggcccacggcgc-gcacgccgaccttcaccgccgac 294 ||||||||||||||||| | |||| |||||| || ||| ||||| ||||||||||||| Sbjct: 18386227 tggtgtgcaacgccgccgtgtaccagcccaccgccaagca-gccgagcttcaccgccgac 18386285 Query: 295 gggcacgagatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgc 348 || |||||||||||| ||||| |||||||| || |||||||| ||||||||| Sbjct: 18386286 ggcttcgagatgagcgtcggcgtcaaccacctcgggcacttcctcctcgcccgc 18386339 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 428 acacgctggcgggcaacgtgccgcc 452 ||||||||||||| ||||||||||| Sbjct: 18387051 acacgctggcggggaacgtgccgcc 18387075
>dbj|AK068143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134C06, full insert sequence Length = 2944 Score = 75.8 bits (38), Expect = 1e-10 Identities = 97/114 (85%), Gaps = 2/114 (1%) Strand = Plus / Plus Query: 236 tggtgtgcaacgccgccatctaccggcccacggcgc-gcacgccgaccttcaccgccgac 294 ||||||||||||||||| | |||| |||||| || ||| ||||| ||||||||||||| Sbjct: 1771 tggtgtgcaacgccgccgtgtaccagcccaccgccaagca-gccgagcttcaccgccgac 1829 Query: 295 gggcacgagatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgc 348 || |||||||||||| ||||| |||||||| || |||||||| ||||||||| Sbjct: 1830 ggcttcgagatgagcgtcggcgtcaaccacctcgggcacttcctcctcgcccgc 1883 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 398 tcatcgtcggctccattaccggcaaacagcacacgctggcgggcaacgtgccgcc 452 |||||||||||||||| ||||| || | ||||||||||||| ||||||||||| Sbjct: 1933 tcatcgtcggctccatcaccgggaacacgaacacgctggcggggaacgtgccgcc 1987
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 75.8 bits (38), Expect = 1e-10 Identities = 97/114 (85%), Gaps = 2/114 (1%) Strand = Plus / Plus Query: 236 tggtgtgcaacgccgccatctaccggcccacggcgc-gcacgccgaccttcaccgccgac 294 ||||||||||||||||| | |||| |||||| || ||| ||||| ||||||||||||| Sbjct: 18396280 tggtgtgcaacgccgccgtgtaccagcccaccgccaagca-gccgagcttcaccgccgac 18396338 Query: 295 gggcacgagatgagcgtgggcgtgaaccacctgggccacttcctgctcgcccgc 348 || |||||||||||| ||||| |||||||| || |||||||| ||||||||| Sbjct: 18396339 ggcttcgagatgagcgtcggcgtcaaccacctcgggcacttcctcctcgcccgc 18396392 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 428 acacgctggcgggcaacgtgccgcc 452 ||||||||||||| ||||||||||| Sbjct: 18397104 acacgctggcggggaacgtgccgcc 18397128
>emb|AJ567760.1|ZMA567760 Zea mays partial mRNA for NADPH-protochlorophyllide oxidoreductase (por gene) Length = 1116 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 276 gccgaccttcaccgccgacgggcacgagatgagcgtgggcgtgaaccacctgggccactt 335 |||| ||| |||||||||||| |||||||||||| ||||| |||||||| ||||| || Sbjct: 459 gccgtcctacaccgccgacggcttcgagatgagcgtcggcgtcaaccacctcggccattt 518 Query: 336 cctgctcgcccgc 348 ||| ||||||||| Sbjct: 519 cctcctcgcccgc 531 Score = 48.1 bits (24), Expect = 0.025 Identities = 45/52 (86%) Strand = Plus / Plus Query: 398 tcatcgtcggctccattaccggcaaacagcacacgctggcgggcaacgtgcc 449 |||||||||||||||| ||||| || | ||||||||||||| |||||||| Sbjct: 581 tcatcgtcggctccatcaccgggaacacgaacacgctggcggggaacgtgcc 632
>gb|AY103784.1| Zea mays PCO066646 mRNA sequence Length = 1664 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 276 gccgaccttcaccgccgacgggcacgagatgagcgtgggcgtgaaccacctgggccactt 335 |||| ||| |||||||||||| |||||||||||| ||||| |||||||| ||||| || Sbjct: 641 gccgtcctacaccgccgacggcttcgagatgagcgtcggcgtcaaccacctcggccattt 700 Query: 336 cctgctcgcccgc 348 ||| ||||||||| Sbjct: 701 cctcctcgcccgc 713 Score = 48.1 bits (24), Expect = 0.025 Identities = 45/52 (86%) Strand = Plus / Plus Query: 398 tcatcgtcggctccattaccggcaaacagcacacgctggcgggcaacgtgcc 449 |||||||||||||||| ||||| || | ||||||||||||| |||||||| Sbjct: 763 tcatcgtcggctccatcaccgggaacacgaacacgctggcggggaacgtgcc 814
>emb|CR689469.2|CNS0FUY1 Tetraodon nigroviridis full-length cDNA Length = 1478 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 311 tgggcgtgaaccacctgggccacttcctgct 341 ||||||||||||||||||||||||||||||| Sbjct: 643 tgggcgtgaaccacctgggccacttcctgct 673
>emb|CR686553.1|CNS0FSP1 Tetraodon nigroviridis full-length cDNA Length = 1470 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 311 tgggcgtgaaccacctgggccacttcctgct 341 ||||||||||||||||||||||||||||||| Sbjct: 638 tgggcgtgaaccacctgggccacttcctgct 668
>emb|CR642344.2|CNS0EULQ Tetraodon nigroviridis full-length cDNA Length = 1294 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 311 tgggcgtgaaccacctgggccacttcctgct 341 ||||||||||||||||||||||||||||||| Sbjct: 418 tgggcgtgaaccacctgggccacttcctgct 448
>gb|U36752.1|CRU36752 Chlamydomonas reinhardtii NADPH:protochlorophyllide oxidoreductase (lpcr-1) gene, nuclear gene encoding chloroplast protein, complete cds Length = 4101 Score = 52.0 bits (26), Expect = 0.002 Identities = 52/58 (89%), Gaps = 2/58 (3%) Strand = Plus / Plus Query: 398 tcatcgtcggctccattaccggcaaacagc-acacgctggcgggcaacgtgccgccca 454 |||||||||||||||| |||||| |||| | |||| ||||| |||||||||||||||| Sbjct: 1869 tcatcgtcggctccatcaccggc-aacaccaacaccctggccggcaacgtgccgccca 1925 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 319 aaccacctgggccacttcctgct 341 ||||||||||||||||||||||| Sbjct: 1790 aaccacctgggccacttcctgct 1812 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 226 ctggatgtgctggtgtgcaacgccgccatctaccggcccac 266 ||||||| ||||||||||||||| ||| | |||| |||||| Sbjct: 1697 ctggatgcgctggtgtgcaacgctgccgtgtacctgcccac 1737
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 226 ctggatgtgctggtgtgcaacgccgccatctac 258 ||||||| |||||||||||||||||||||||| Sbjct: 2392719 ctggatgccctggtgtgcaacgccgccatctac 2392751
>ref|XM_576003.1| PREDICTED: Rattus norvegicus similar to alcohol dehydrogenase PAN2 (LOC500629), mRNA Length = 1637 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 316 gtgaaccacctgggccacttcct 338 ||||||||||||||||||||||| Sbjct: 714 gtgaaccacctgggccacttcct 736
>ref|XM_415826.1| PREDICTED: Gallus gallus similar to PHD zinc finger transcription factor (LOC417580), mRNA Length = 4964 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 316 gtgaaccacctgggccacttcctgct 341 |||||||||||||||||||| ||||| Sbjct: 4411 gtgaaccacctgggccactttctgct 4436
>ref|XM_847129.1| PREDICTED: Canis familiaris similar to dehydrogenase/reductase (SDR family) X-linked (LOC609792), mRNA Length = 1164 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 317 tgaaccacctgggccacttcctgctc 342 ||||| |||||||||||||||||||| Sbjct: 605 tgaactacctgggccacttcctgctc 630
>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7 Length = 344615 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 tgggcgtgaaccacctgggcca 332 |||||||||||||||||||||| Sbjct: 219672 tgggcgtgaaccacctgggcca 219693
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 208 cgccgcgccgagatgccgctggatgtgctg 237 |||||||||| |||||||||||| |||||| Sbjct: 5300 cgccgcgccgtgatgccgctggaggtgctg 5329
>gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, complete sequence Length = 118183 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 208 cgccgcgccgagatgccgctggatgtgctg 237 |||||||||| |||||||||||| |||||| Sbjct: 65282 cgccgcgccgtgatgccgctggaggtgctg 65311
>emb|BX936159.2| Gallus gallus finished cDNA, clone ChEST145o20 Length = 967 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 316 gtgaaccacctgggccacttcctgct 341 |||||||||||||||||||| ||||| Sbjct: 412 gtgaaccacctgggccactttctgct 437
>gb|AF265661.1|AF265661 Oryctolagus cuniculus 17-beta-hydroxysteroid dehydrogenase type 1 (HSD17B1) mRNA, partial cds Length = 424 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 tggatgtgctggtgtgcaacgc 248 |||||||||||||||||||||| Sbjct: 74 tggatgtgctggtgtgcaacgc 95
>gb|AC124697.3| Mus musculus BAC clone RP24-177N20 from chromosome 1, complete sequence Length = 164612 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cttctcccctccaccctctcc 130 ||||||||||||||||||||| Sbjct: 42019 cttctcccctccaccctctcc 41999
>emb|CR679839.2|CNS0FNIJ Tetraodon nigroviridis full-length cDNA Length = 1183 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttcctgct 341 ||||| |||||| |||||||||||||||| Sbjct: 466 ggcgtcaaccacgtgggccacttcctgct 494
>emb|CR679104.2|CNS0FMY4 Tetraodon nigroviridis full-length cDNA Length = 1174 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttcctgct 341 ||||| |||||| |||||||||||||||| Sbjct: 443 ggcgtcaaccacgtgggccacttcctgct 471
>emb|CR677554.2|CNS0FLRH Tetraodon nigroviridis full-length cDNA Length = 1105 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttcctgct 341 ||||| |||||| |||||||||||||||| Sbjct: 361 ggcgtcaaccacgtgggccacttcctgct 389
>emb|CR678211.2|CNS0FM9J Tetraodon nigroviridis full-length cDNA Length = 1187 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttcctgct 341 ||||| |||||| |||||||||||||||| Sbjct: 442 ggcgtcaaccacgtgggccacttcctgct 470
>emb|CR676112.2|CNS0FKNQ Tetraodon nigroviridis full-length cDNA Length = 1102 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttcctgct 341 ||||| |||||| |||||||||||||||| Sbjct: 364 ggcgtcaaccacgtgggccacttcctgct 392
>emb|CR670567.2|CNS0FGDP Tetraodon nigroviridis full-length cDNA Length = 1184 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttcctgct 341 ||||| |||||| |||||||||||||||| Sbjct: 466 ggcgtcaaccacgtgggccacttcctgct 494
>emb|CR666827.2|CNS0FDHT Tetraodon nigroviridis full-length cDNA Length = 555 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ggtgaaggacacggcggcgtc 186 ||||||||||||||||||||| Sbjct: 224 ggtgaaggacacggcggcgtc 204
>emb|CR660669.2|CNS0F8QR Tetraodon nigroviridis full-length cDNA Length = 1093 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttcctgct 341 ||||| |||||| |||||||||||||||| Sbjct: 363 ggcgtcaaccacgtgggccacttcctgct 391
>emb|CR660406.2|CNS0F8JG Tetraodon nigroviridis full-length cDNA Length = 1141 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttcctgct 341 ||||| |||||| |||||||||||||||| Sbjct: 427 ggcgtcaaccacgtgggccacttcctgct 455
>emb|CR658583.1|CNS0F74T Tetraodon nigroviridis full-length cDNA Length = 1182 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttcctgct 341 ||||| |||||| |||||||||||||||| Sbjct: 466 ggcgtcaaccacgtgggccacttcctgct 494
>emb|CR648814.2|CNS0EZLG Tetraodon nigroviridis full-length cDNA Length = 1116 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttcctgct 341 ||||| |||||| |||||||||||||||| Sbjct: 419 ggcgtcaaccacgtgggccacttcctgct 447
>emb|CR643055.2|CNS0EV5H Tetraodon nigroviridis full-length cDNA Length = 1148 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttcctgct 341 ||||| |||||| |||||||||||||||| Sbjct: 429 ggcgtcaaccacgtgggccacttcctgct 457
>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7 Length = 318136 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 gagatgccgctggatgtgctg 237 ||||||||||||||||||||| Sbjct: 129943 gagatgccgctggatgtgctg 129963
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 agatgccgctggatgtgctg 237 |||||||||||||||||||| Sbjct: 186650 agatgccgctggatgtgctg 186631
>ref|XM_510023.1| PREDICTED: Pan troglodytes similar to retinol dehydrogenase 12 (all-trans and 9-cis) (LOC452988), mRNA Length = 1617 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 aaccacctgggccacttcct 338 |||||||||||||||||||| Sbjct: 826 aaccacctgggccacttcct 845
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cccgcctcctcatggaggac 363 |||||||||||||||||||| Sbjct: 65543 cccgcctcctcatggaggac 65562
>ref|XM_871115.1| PREDICTED: Bos taurus similar to WW domain-containing oxidoreductase isoform 1 (LOC618792), mRNA Length = 2238 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gtgaaccacctgggccactt 335 |||||||||||||||||||| Sbjct: 184 gtgaaccacctgggccactt 203
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 213 cgccgagatgccgctggatgtgctggtg 240 ||||||||||||||||| ||||||||| Sbjct: 2911784 cgccgagatgccgctggcggtgctggtg 2911811
>gb|AC116573.7| Mus musculus BAC clone RP23-114E15 from chromosome 6, complete sequence Length = 211910 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctctccagcttctcccctcc 121 |||||||||||||||||||| Sbjct: 118208 ctctccagcttctcccctcc 118189
>ref|XM_583636.2| PREDICTED: Bos taurus similar to GTPase activating RANGAP domain-like 1 isoform 2 (LOC507082), mRNA Length = 7479 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 aaccacctgggccacttcctgctc 342 ||||||||||||||||||| |||| Sbjct: 4120 aaccacctgggccacttcccgctc 4143
>gb|BC025724.1| Homo sapiens retinol dehydrogenase 12 (all-trans and 9-cis), mRNA (cDNA clone MGC:34672 IMAGE:5199154), complete cds Length = 1780 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 aaccacctgggccacttcct 338 |||||||||||||||||||| Sbjct: 609 aaccacctgggccacttcct 628
>ref|NM_152443.1| Homo sapiens retinol dehydrogenase 12 (all-trans/9-cis/11-cis) (RDH12), mRNA Length = 1780 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 aaccacctgggccacttcct 338 |||||||||||||||||||| Sbjct: 609 aaccacctgggccacttcct 628
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tgccgctggatgtgctggtg 240 |||||||||||||||||||| Sbjct: 785648 tgccgctggatgtgctggtg 785667
>gb|AC004682.1|HUAC004682 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-259H10, complete sequence Length = 189134 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 tcacccatggctctccagct 111 |||||||||||||||||||| Sbjct: 161409 tcacccatggctctccagct 161390
>gb|AC126798.3| Mus musculus BAC clone RP24-229N7 from chromosome 1, complete sequence Length = 172452 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ccccaagaagggcagcagca 152 |||||||||||||||||||| Sbjct: 124088 ccccaagaagggcagcagca 124069
>gb|AC098882.3| Mus musculus BAC clone RP23-122D13 from 12, complete sequence Length = 223130 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 gcagtgcagtgctagctagc 73 |||||||||||||||||||| Sbjct: 181503 gcagtgcagtgctagctagc 181484
>ref|NM_017853.1| Homo sapiens thioredoxin-like 4B (TXNL4B), mRNA Length = 2540 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 tcacccatggctctccagct 111 |||||||||||||||||||| Sbjct: 2030 tcacccatggctctccagct 2011
>gb|AC011598.33| Homo sapiens 12 BAC RP11-778N14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171787 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gctggatgtgctggtgtgca 244 |||||||||||||||||||| Sbjct: 72714 gctggatgtgctggtgtgca 72733
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 cacgccgaccttcaccgccgacgg 296 ||||| |||||||||||||||||| Sbjct: 236028 cacgctgaccttcaccgccgacgg 236005 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 cacgccgaccttcaccgccgacgg 296 ||||| |||||||||||||||||| Sbjct: 234714 cacgctgaccttcaccgccgacgg 234691 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 cacgccgaccttcaccgccgacgg 296 ||||| |||||||||||||||||| Sbjct: 232743 cacgctgaccttcaccgccgacgg 232720 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 cacgccgaccttcaccgccgacgg 296 ||||| |||||||||||||||||| Sbjct: 232086 cacgctgaccttcaccgccgacgg 232063
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 cacgccgaccttcaccgccgacgg 296 ||||| |||||||||||||||||| Sbjct: 5753 cacgctgaccttcaccgccgacgg 5730 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 cacgccgaccttcaccgccgacgg 296 ||||| |||||||||||||||||| Sbjct: 4445 cacgctgaccttcaccgccgacgg 4422
>gb|AF498106.1| Aedes aegypti relish R7 isoform mRNA, complete cds; alternatively spliced Length = 2730 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 agctcgttgaactcctgcag 57 |||||||||||||||||||| Sbjct: 1390 agctcgttgaactcctgcag 1409
>gb|AF498105.1| Aedes aegypti relish R6 isoform mRNA, complete cds; alternatively spliced Length = 3280 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 agctcgttgaactcctgcag 57 |||||||||||||||||||| Sbjct: 1941 agctcgttgaactcctgcag 1960
>gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome 12, complete sequence Length = 201550 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gcagtgcagtgctagctagc 73 |||||||||||||||||||| Sbjct: 2135 gcagtgcagtgctagctagc 2154
>emb|CR617379.1| full-length cDNA clone CS0DH003YH10 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 948 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 tcacccatggctctccagct 111 |||||||||||||||||||| Sbjct: 463 tcacccatggctctccagct 444
>dbj|AK054835.1| Homo sapiens cDNA FLJ30273 fis, clone BRACE2002685, moderately similar to Homo sapiens androgen-regulated short-chain dehydrogenase/reductase 1 (ARSDR1) mRNA Length = 1667 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 aaccacctgggccacttcct 338 |||||||||||||||||||| Sbjct: 551 aaccacctgggccacttcct 570
>gb|AC078911.11| Mus musculus Strain C57BL6/J Chromosome 2 RP23-111A22, complete sequence Length = 200329 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gctggatgtgctggtgtgca 244 |||||||||||||||||||| Sbjct: 68186 gctggatgtgctggtgtgca 68205
>gb|AC091729.4| Homo sapiens BAC clone RP13-580H13 from 7, complete sequence Length = 104285 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ccagcttctcccctccaccc 125 |||||||||||||||||||| Sbjct: 51908 ccagcttctcccctccaccc 51927
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cgcgttccgccgcgccgaga 220 |||||||||||||||||||| Sbjct: 720274 cgcgttccgccgcgccgaga 720293
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cccgcctcctcatggaggac 363 |||||||||||||||||||| Sbjct: 28260741 cccgcctcctcatggaggac 28260760
>gb|AF329478.1|AF329478 Arthrobacter sp. 1IN sarcosine oxidase operon, partial sequence Length = 5855 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 cacggcgcgcacgccgacct 283 |||||||||||||||||||| Sbjct: 4594 cacggcgcgcacgccgacct 4575
>dbj|D50085.1| Cucumis sativus mRNA for NADPH-protochlorophyllide oxidoreductase, complete cds Length = 1408 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 gccgctggatgtgctggtgtgcaa 245 |||||| ||||||||||||||||| Sbjct: 529 gccgcttgatgtgctggtgtgcaa 552
>gb|AC018737.9| Homo sapiens BAC clone RP11-416H1 from 2, complete sequence Length = 206454 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gctggatgtgctggtgtgca 244 |||||||||||||||||||| Sbjct: 35980 gctggatgtgctggtgtgca 35999
>gb|AC068547.7| Homo sapiens BAC clone RP11-458J7 from 2, complete sequence Length = 185555 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 tctccagcttctcccctccaccct 126 ||||||||||||| |||||||||| Sbjct: 85347 tctccagcttctctcctccaccct 85370
>gb|AF350004.1| Bacteriophage N4 late gene region, partial sequence Length = 17432 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 tgagcgtgggcgtgaaccac 324 |||||||||||||||||||| Sbjct: 16778 tgagcgtgggcgtgaaccac 16797
>ref|XM_234334.3| PREDICTED: Rattus norvegicus retinol dehydrogenase 12 (predicted) (Rdh12_predicted), mRNA Length = 1266 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 aaccacctgggccacttcct 338 |||||||||||||||||||| Sbjct: 637 aaccacctgggccacttcct 656
>gb|AC009087.4|AC009087 Homo sapiens chromosome 16 clone RP11-384M15, complete sequence Length = 174933 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 tcacccatggctctccagct 111 |||||||||||||||||||| Sbjct: 32036 tcacccatggctctccagct 32017
>dbj|AK000518.1| Homo sapiens cDNA FLJ20511 fis, clone KAT09708 Length = 2540 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 tcacccatggctctccagct 111 |||||||||||||||||||| Sbjct: 2030 tcacccatggctctccagct 2011
>ref|XM_320381.2| Anopheles gambiae str. PEST ENSANGP00000013940 (ENSANGG00000011451), partial mRNA Length = 1272 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 ctggatgtgctggtgtgcaa 245 |||||||||||||||||||| Sbjct: 709 ctggatgtgctggtgtgcaa 728
>emb|AJ324630.1|HSA324630 Homo sapiens genomic sequence surrounding NotI site, clone NR5-FE9C Length = 731 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 cctgctcgcccgcctcctca 355 |||||||||||||||||||| Sbjct: 187 cctgctcgcccgcctcctca 168
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tgccgctggatgtgctggtg 240 |||||||||||||||||||| Sbjct: 709928 tgccgctggatgtgctggtg 709947
>gb|BC009646.1| Homo sapiens thioredoxin-like 4B, mRNA (cDNA clone MGC:4959 IMAGE:3458545), complete cds Length = 2505 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 tcacccatggctctccagct 111 |||||||||||||||||||| Sbjct: 1998 tcacccatggctctccagct 1979
>dbj|AK063519.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H06, full insert sequence Length = 2147 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cccgcctcctcatggaggac 363 |||||||||||||||||||| Sbjct: 156 cccgcctcctcatggaggac 175
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gcacgccgaccttcaccgcc 291 |||||||||||||||||||| Sbjct: 2045892 gcacgccgaccttcaccgcc 2045873 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 226 ctggatgtgctggtgtgcaacgccgccatcta 257 ||||||| ||||||||||||||| | |||||| Sbjct: 555425 ctggatgcgctggtgtgcaacgcgggcatcta 555394
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tgccgctggatgtgctggtg 240 |||||||||||||||||||| Sbjct: 4406940 tgccgctggatgtgctggtg 4406921
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 ggcgtgaaccacctgggccacttc 336 ||||||||||| |||||||||||| Sbjct: 1724646 ggcgtgaaccatctgggccacttc 1724669
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cccgcctcctcatggaggac 363 |||||||||||||||||||| Sbjct: 28245320 cccgcctcctcatggaggac 28245339
>gb|M69197.1|HUMHP2HPR Human haptoglobin and haptoglobin-related protein (HP and HPR) genes, complete cds Length = 38542 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tcacccatggctctccagct 111 |||||||||||||||||||| Sbjct: 31816 tcacccatggctctccagct 31835
>gb|AY128691.1| Synthetic construct N-terminal his-tagged bacteriophage N4 RNA polymerase gene, complete cds Length = 10617 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 tgagcgtgggcgtgaaccac 324 |||||||||||||||||||| Sbjct: 9183 tgagcgtgggcgtgaaccac 9202
>emb|AL807380.6| Mouse DNA sequence from clone RP23-192G18 on chromosome 2, complete sequence Length = 208614 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gctggatgtgctggtgtgca 244 |||||||||||||||||||| Sbjct: 6427 gctggatgtgctggtgtgca 6446
>gb|M92069.1|HUMRTVLC Human retrovirus-like sequence-isoleucine c (RTVL-Ic) gene, Alu repeats Length = 6865 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tcacccatggctctccagct 111 |||||||||||||||||||| Sbjct: 6733 tcacccatggctctccagct 6752 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,328,240 Number of Sequences: 3902068 Number of extensions: 3328240 Number of successful extensions: 71629 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70679 Number of HSP's gapped (non-prelim): 942 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)