>KCNN3_PIG (P58392) Small conductance calcium-activated potassium channel|
           protein 3 (SK3)
          Length = 724

 Score = 35.0 bits (79), Expect = 0.090
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
 Frame = +3

Query: 258 LQLHQEVQQDQEPPPAPVFQLSHLQAASV------------RQPGSSAEYALLAP 386
           LQL Q+ QQ Q+ PP P+ QL+ LQ+  V            R P SS   A+L P
Sbjct: 61  LQLQQQQQQQQQQPPHPLSQLAQLQSQPVHPGLLHSSPTAFRAPPSSNSTAILHP 115

>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)|
          Length = 606

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +3

Query: 243 HHYRLLQLHQEVQQDQEPPPAPVFQLSHLQAASVRQPGSSAEYALLAP 386
           HHY L Q HQ+ QQ Q P P  V          V   GS+   A L P
Sbjct: 42  HHYSLQQQHQQQQQQQPPAPPAV-----ATTTVVNMSGSTTTAANLKP 84

>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 240 HHHYRLLQLHQEVQQDQEPPPAP 308
           HHH +  Q  Q+ QQ Q PPP P
Sbjct: 22  HHHQQHHQQQQQQQQQQPPPPIP 44



 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 240 HHHYRLLQLHQEVQQDQEPPPAPVFQLSHLQAAS 341
           HH +   Q HQ+ QQ Q+  P P    +  QA+S
Sbjct: 19  HHQHHHQQHHQQQQQQQQQQPPPPIPANGQQASS 52

>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
           (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 261 QLHQEVQQDQEPPPAPVFQLSHLQAASVRQPGSS 362
           Q  Q+ QQ Q+PPPA         AA+VR+PG S
Sbjct: 177 QQQQQQQQQQQPPPA---------AANVRKPGGS 201

>HLX1_HUMAN (Q14774) Homeobox protein HLX1 (Homeobox protein HB24)|
          Length = 488

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 240 HHHYRLLQLHQEVQQDQEPPPAP 308
           HHH+   Q  Q+  Q Q+PPP P
Sbjct: 120 HHHHPQQQQQQQQPQQQQPPPPP 142

>RANB3_MOUSE (Q9CT10) Ran-binding protein 3 (RanBP3)|
          Length = 491

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 246 HYRLLQLHQEVQQDQE---PPPAPVFQLSHLQAASVRQPGSSAEYALLAPMG 392
           H+R+L L    +Q+QE   PPP P        A    +   S E A+LAP G
Sbjct: 429 HHRILALRSRAEQEQEAKAPPPEP-------GATRATEEEDSDEDAVLAPSG 473

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 240 HHHYRLLQLHQEVQQDQEPPPAPVFQLSHLQAASVRQPGSSAEYA 374
           H+H+    LHQ  QQ Q PPP  + Q  H    +   PG + E+A
Sbjct: 92  HYHH----LHQ--QQQQHPPPPHMQQQQHHGGPAPPPPGGAPEHA 130

>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein phosphatase|
            (EC 3.1.3.16) (PH domain leucine-rich repeat protein
            phosphatase) (Pleckstrin homology domain-containing
            family E protein 1) (Suprachiasmatic nucleus circadian
            oscillatory
          Length = 1717

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 255  LLQLHQEVQQDQEPPPAPVFQ 317
            +++ HQE QQ Q+PPP P  Q
Sbjct: 1677 IMKHHQEQQQQQQPPPPPQLQ 1697

>PO6F2_MOUSE (Q8BJI4) POU domain, class 6, transcription factor 2|
          Length = 691

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 261 QLHQEVQQDQEPPPAPVFQLSHLQAASVRQPGS 359
           Q  Q+ QQ Q+PPP P  Q  H Q AS   P S
Sbjct: 188 QQQQQQQQQQQPPPPPTSQ--HPQPASQAPPQS 218

>PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-responsive protein|
           7a) (Turgor-responsive protein 31)
          Length = 289

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 261 QLHQEVQQDQEPPPAPVFQLSHLQAASVRQPG 356
           Q   E +  QEPPPAP+F+ S L + S  + G
Sbjct: 26  QSQDEPKDYQEPPPAPLFEPSELTSWSFYRAG 57

>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 240 HHHYRLLQLHQEVQQDQEPPPAP 308
           H H+   Q HQ+ QQ   PPP P
Sbjct: 20  HQHHHQQQHHQQQQQQPPPPPIP 42

>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 240 HHHYRLLQLHQEVQQDQEPPPAP 308
           H H+   Q HQ+ QQ   PPP P
Sbjct: 20  HQHHHQQQHHQQQQQQPPPPPIP 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,576,962
Number of Sequences: 219361
Number of extensions: 495803
Number of successful extensions: 1817
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1776
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)