>ref|NM_188429.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1896

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 108/129 (83%), Gaps = 12/129 (9%)
 Strand = Plus / Plus

                                                                       
Query: 276 gtgcagcaggaccaagaacctccgcccgcccccgtcttccagctctcgcacctgcaggcc 335
           |||||||||||||||||||| ||||| |  |||||||||         ||||| ||| | 
Sbjct: 262 gtgcagcaggaccaagaaccgccgcctgttcccgtcttc---------cacctccagccg 312

                                                                       
Query: 336 gcgtccgtgaggcagc---cgggctcgtccgccgagtatgcccttctcgcgcccatgggc 392
           ||||||||||||||||   ||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 313 gcgtccgtgaggcagctgtcgggctcctccgccgagtatgcccttctctcgcccatgggc 372

                    
Query: 393 gacgccggc 401
           |||||||||
Sbjct: 373 gacgccggc 381



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 30 ggttatgggatccggcgagctggatggacgcgcattgg 67
          ||||||||||||||||||| ||||||||||||||||||
Sbjct: 31 ggttatgggatccggcgaggtggatggacgcgcattgg 68



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 106 cgggggatctggatccgaggcaccaccacc 135
           ||||||||||||||||||||||||||||||
Sbjct: 101 cgggggatctggatccgaggcaccaccacc 130

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 108/129 (83%), Gaps = 12/129 (9%)
 Strand = Plus / Minus

                                                                           
Query: 276     gtgcagcaggaccaagaacctccgcccgcccccgtcttccagctctcgcacctgcaggcc 335
               |||||||||||||||||||| ||||| |  |||||||||         ||||| ||| | 
Sbjct: 6222787 gtgcagcaggaccaagaaccgccgcctgttcccgtcttc---------cacctccagccg 6222737

                                                                           
Query: 336     gcgtccgtgaggcagc---cgggctcgtccgccgagtatgcccttctcgcgcccatgggc 392
               ||||||||||||||||   ||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 6222736 gcgtccgtgaggcagctgtcgggctcctccgccgagtatgcccttctctcgcccatgggc 6222677

                        
Query: 393     gacgccggc 401
               |||||||||
Sbjct: 6222676 gacgccggc 6222668



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                    
Query: 31      gttatgggatccggcgagctggatggacgcgcattgg 67
               |||||||||||||||||| ||||||||||||||||||
Sbjct: 6223017 gttatgggatccggcgaggtggatggacgcgcattgg 6222981



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                             
Query: 106     cgggggatctggatccgaggcaccaccacc 135
               ||||||||||||||||||||||||||||||
Sbjct: 6222948 cgggggatctggatccgaggcaccaccacc 6222919



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 1       agttcagtcccccactcctctcct 24
               |||| |||||||||||||||||||
Sbjct: 6223149 agtttagtcccccactcctctcct 6223126

>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0038J17
          Length = 180186

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 108/129 (83%), Gaps = 12/129 (9%)
 Strand = Plus / Minus

                                                                         
Query: 276   gtgcagcaggaccaagaacctccgcccgcccccgtcttccagctctcgcacctgcaggcc 335
             |||||||||||||||||||| ||||| |  |||||||||         ||||| ||| | 
Sbjct: 84985 gtgcagcaggaccaagaaccgccgcctgttcccgtcttc---------cacctccagccg 84935

                                                                         
Query: 336   gcgtccgtgaggcagc---cgggctcgtccgccgagtatgcccttctcgcgcccatgggc 392
             ||||||||||||||||   ||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 84934 gcgtccgtgaggcagctgtcgggctcctccgccgagtatgcccttctctcgcccatgggc 84875

                      
Query: 393   gacgccggc 401
             |||||||||
Sbjct: 84874 gacgccggc 84866



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                  
Query: 31    gttatgggatccggcgagctggatggacgcgcattgg 67
             |||||||||||||||||| ||||||||||||||||||
Sbjct: 85215 gttatgggatccggcgaggtggatggacgcgcattgg 85179



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                           
Query: 106   cgggggatctggatccgaggcaccaccacc 135
             ||||||||||||||||||||||||||||||
Sbjct: 85146 cgggggatctggatccgaggcaccaccacc 85117



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     agttcagtcccccactcctctcct 24
             |||| |||||||||||||||||||
Sbjct: 85347 agtttagtcccccactcctctcct 85324

>dbj|AB071805.1| Oryza sativa (japonica cultivar-group) mRNA for transcription
           factor PCF5, complete cds
          Length = 2442

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 108/129 (83%), Gaps = 12/129 (9%)
 Strand = Plus / Plus

                                                                       
Query: 276 gtgcagcaggaccaagaacctccgcccgcccccgtcttccagctctcgcacctgcaggcc 335
           |||||||||||||||||||| ||||| |  |||||||||         ||||| ||| | 
Sbjct: 370 gtgcagcaggaccaagaaccgccgcctgttcccgtcttc---------cacctccagccg 420

                                                                       
Query: 336 gcgtccgtgaggcagc---cgggctcgtccgccgagtatgcccttctcgcgcccatgggc 392
           ||||||||||||||||   ||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 421 gcgtccgtgaggcagctgtcgggctcctccgccgagtatgcccttctctcgcccatgggc 480

                    
Query: 393 gacgccggc 401
           |||||||||
Sbjct: 481 gacgccggc 489



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 46/48 (95%)
 Strand = Plus / Plus

                                                           
Query: 20  ctcctcccctggttatgggatccggcgagctggatggacgcgcattgg 67
           |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 129 ctcctctcctggttatgggatccggcgaggtggatggacgcgcattgg 176



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 106 cgggggatctggatccgaggcaccaccacc 135
           ||||||||||||||||||||||||||||||
Sbjct: 209 cgggggatctggatccgaggcaccaccacc 238

>gb|AC164549.4| Mus musculus BAC clone RP24-273K1 from chromosome 16, complete sequence
          Length = 182658

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 309   gtcttccagctctcgcacctgcagg 333
             |||||||||||||| ||||||||||
Sbjct: 24369 gtcttccagctctcccacctgcagg 24345

>gb|AF191070.4| Homo sapiens chromosome 8 clone RP1-263I11 map q12.1, complete sequence
          Length = 32706

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 257   gctgcagctgcaccaagaagtgcag 281
             |||||||||||||||||||| ||||
Sbjct: 18912 gctgcagctgcaccaagaagggcag 18888

>gb|AC126457.3| Mus musculus BAC clone RP23-68E6 from 16, complete sequence
          Length = 147585

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 309   gtcttccagctctcgcacctgcagg 333
             |||||||||||||| ||||||||||
Sbjct: 96880 gtcttccagctctcccacctgcagg 96856

>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence
          Length = 142102

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 257  gctgcagctgcaccaagaagtgcag 281
            |||||||||||||||||||| ||||
Sbjct: 5638 gctgcagctgcaccaagaagggcag 5614

>gb|AC090977.48| Mus musculus strain C57BL/6J clone rp23-213m14 map 16, complete sequence
          Length = 208412

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 309    gtcttccagctctcgcacctgcagg 333
              |||||||||||||| ||||||||||
Sbjct: 204259 gtcttccagctctcccacctgcagg 204235

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 370     atgcccttctcgcgcccatgg 390
               |||||||||||||||||||||
Sbjct: 2204747 atgcccttctcgcgcccatgg 2204727

>ref|NM_124725.2| Arabidopsis thaliana GLT1 AT5G53460 (GLT1) mRNA, complete cds
          Length = 6627

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ctgcaccaagaagtgcagca 283
            ||||||||||||||||||||
Sbjct: 3748 ctgcaccaagaagtgcagca 3729

>gb|AC129574.8| Mus musculus chromosome 16, clone RP23-78C2, complete sequence
          Length = 214649

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 239   gcaccaccactaccggctgctgca 262
             |||||||||||||||||| |||||
Sbjct: 53496 gcaccaccactaccggctcctgca 53519

>gb|AC156574.2| Mus musculus BAC clone RP23-54L14 from chromosome 14, complete sequence
          Length = 208155

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      cccccactcctctcctcccc 28
              ||||||||||||||||||||
Sbjct: 140906 cccccactcctctcctcccc 140925

>gb|CP000318.1| Polaromonas sp. JS666 plasmid 2, complete sequence
          Length = 338007

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    ctaccggctgctgcagctgc 267
              ||||||||||||||||||||
Sbjct: 160604 ctaccggctgctgcagctgc 160623

>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 388    tgggcgacgccggccagtcc 407
              ||||||||||||||||||||
Sbjct: 133321 tgggcgacgccggccagtcc 133340

>gb|AC078816.16| Homo sapiens 3 BAC RP11-600P18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183861

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    gtgaggcagccgggctcgtc 361
              ||||||||||||||||||||
Sbjct: 121895 gtgaggcagccgggctcgtc 121876

>gb|L39891.1|HUMPKD1GEN Homo sapiens polycystic kidney disease-associated protein (PKD1) gene,
             complete cds
          Length = 53522

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    ccccactcctctcctcccct 29
             ||||||||||||||||||||
Sbjct: 35453 ccccactcctctcctcccct 35472

>dbj|AB201447.1| Triticum aestivum wSSII-D gene for starch synthase II-D, complete
           cds
          Length = 7010

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 333 gccgcgtccgtgaggcagcc 352
           ||||||||||||||||||||
Sbjct: 449 gccgcgtccgtgaggcagcc 468

>gb|AC012305.7| Homo sapiens BAC clone RP11-84G18 from 2, complete sequence
          Length = 190385

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     cccccactcctctcctcccc 28
             ||||||||||||||||||||
Sbjct: 20067 cccccactcctctcctcccc 20048

>dbj|AB020754.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYN8
          Length = 54528

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   ctgcaccaagaagtgcagca 283
             ||||||||||||||||||||
Sbjct: 46905 ctgcaccaagaagtgcagca 46886

>emb|AJ269502.1|TAE269502 Triticum aestivum mRNA for starch synthase IIa-1 (wSs2a-1 gene)
          Length = 2866

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 333 gccgcgtccgtgaggcagcc 352
           ||||||||||||||||||||
Sbjct: 423 gccgcgtccgtgaggcagcc 442

>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     gcgaagctccagccggggga 112
              ||||||||||||||||||||
Sbjct: 990019 gcgaagctccagccggggga 990038

>gb|AC117700.22| Mus musculus chromosome 15, clone RP23-455J20, complete sequence
          Length = 187994

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     tcccccactcctctcctccc 27
             ||||||||||||||||||||
Sbjct: 39993 tcccccactcctctcctccc 39974

>emb|AL928555.8| Zebrafish DNA sequence from clone DKEY-29E5, complete sequence
          Length = 189224

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    gaacctccgcccgcccccgt 310
              ||||||||||||||||||||
Sbjct: 118136 gaacctccgcccgcccccgt 118117

>emb|CT025564.10| Mouse DNA sequence from clone RP24-123J6 on chromosome 14, complete
              sequence
          Length = 165380

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      cccccactcctctcctcccc 28
              ||||||||||||||||||||
Sbjct: 130743 cccccactcctctcctcccc 130762

>emb|AL731805.8| Mouse DNA sequence from clone RP23-358E19 on chromosome 11, complete
             sequence
          Length = 111002

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    cccactcctctcctcccctg 30
             ||||||||||||||||||||
Sbjct: 73482 cccactcctctcctcccctg 73501


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,913,652
Number of Sequences: 3902068
Number of extensions: 2913652
Number of successful extensions: 64349
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64181
Number of HSP's gapped (non-prelim): 164
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)