ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast50a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479571.1| Oryza sativa (japonica cultivar-group), mRNA 50 4e-04
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 4e-04
3dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic D... 50 4e-04
4emb|Y08987.1|OSR40G2 O.sativa osr40g2 gene 50 4e-04
5dbj|AK103324.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 4e-04
6gb|BT017376.1| Zea mays clone EL01N0325G07.c mRNA sequence 42 0.10
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.10
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.10
9emb|X95402.1|OSOSR40C1 O.sativa mRNA for novel protein, osr40c1 42 0.10
10dbj|AK069815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.10
11gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.10
12ref|XM_500590.1| Yarrowia lipolytica CLIB122, YALI0B06985g predi... 38 1.6
13emb|CR936809.1| Homo sapiens mRNA; cDNA DKFZp781M1056 (from clon... 38 1.6
14dbj|AK128508.1| Homo sapiens cDNA FLJ46661 fis, clone TRACH3006717 38 1.6
15ref|NM_014738.2| Homo sapiens KIAA0195 (KIAA0195), mRNA 38 1.6
16dbj|AK094864.1| Homo sapiens cDNA FLJ37545 fis, clone BRCAN2027355 38 1.6
17gb|AC100787.17| Homo sapiens chromosome 17, clone CTD-2589J4, co... 38 1.6
18dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 38 1.6
19dbj|D83779.1| Homo sapiens mRNA for KIAA0195 gene, partial cds 38 1.6
20gb|BC045540.1| Homo sapiens KIAA0195, mRNA (cDNA clone MGC:57170... 38 1.6
21gb|BC042942.1| Homo sapiens KIAA0195, mRNA (cDNA clone IMAGE:529... 38 1.6
22gb|AF070545.1|AF070545 Homo sapiens clone 24581 unknown mRNA 38 1.6
23emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 38 1.6
24ref|XM_590989.2| PREDICTED: Bos taurus similar to Leucine zipper... 36 6.4
25ref|XM_544080.2| PREDICTED: Canis familiaris similar to Kappa-ty... 36 6.4
26ref|XM_390175.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 36 6.4
27gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome... 36 6.4
28gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 36 6.4
29gb|AC175315.3| Mus musculus chromosome 1, clone wi1-1003N17, com... 36 6.4
30gb|AC112778.7| Homo sapiens X BAC RP11-629O4 (Roswell Park Cance... 36 6.4
31gb|AC112919.5| Homo sapiens X BAC RP11-294J19 (Roswell Park Canc... 36 6.4
32gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N... 36 6.4
33gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6... 36 6.4
34gb|AC068933.11| Homo sapiens chromosome 8, clone RP11-760J15, co... 36 6.4
35gb|AC154458.2| Mus musculus BAC clone RP24-162I9 from chromosome... 36 6.4
36ref|XM_221119.3| PREDICTED: Rattus norvegicus similar to mKIAA01... 36 6.4
37gb|AF172113.1|AF172113 Equine infectious anemia virus clone 5 ga... 36 6.4
38gb|AF172112.1|AF172112 Equine infectious anemia virus clone 4 ga... 36 6.4
39gb|AF172111.1|AF172111 Equine infectious anemia virus clone 3 ga... 36 6.4
40gb|AF172110.1|AF172110 Equine infectious anemia virus clone 2 ga... 36 6.4
41gb|AF172109.1|AF172109 Equine infectious anemia virus clone 1 ga... 36 6.4
42gb|AF172108.1|AF172108 Equine infectious anemia virus clone 11 g... 36 6.4
43gb|AF172105.1|AF172105 Equine infectious anemia virus clone 8 ga... 36 6.4
44gb|AF172104.1|AF172104 Equine infectious anemia virus clone 7 ga... 36 6.4
45gb|AF172103.1|AF172103 Equine infectious anemia virus clone 6 ga... 36 6.4
46gb|AF172102.1|AF172102 Equine infectious anemia virus clone 5 ga... 36 6.4
47gb|AF172101.1|AF172101 Equine infectious anemia virus clone 4 ga... 36 6.4
48gb|AF172100.1|AF172100 Equine infectious anemia virus clone 3 ga... 36 6.4 
>ref|XM_479571.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1511

 Score = 50.1 bits (25), Expect = 4e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 7   aagatgttcgggttcgggcaccaccacaa 35
           |||||||| ||||||||||||||||||||
Sbjct: 78  aagatgtttgggttcgggcaccaccacaa 106
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 4e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 7        aagatgttcgggttcgggcaccaccacaa 35
                |||||||| ||||||||||||||||||||
Sbjct: 28950715 aagatgtttgggttcgggcaccaccacaa 28950743
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>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0060O17
          Length = 180015

 Score = 50.1 bits (25), Expect = 4e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 7     aagatgttcgggttcgggcaccaccacaa 35
             |||||||| ||||||||||||||||||||
Sbjct: 68252 aagatgtttgggttcgggcaccaccacaa 68280
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>emb|Y08987.1|OSR40G2 O.sativa osr40g2 gene
          Length = 2101

 Score = 50.1 bits (25), Expect = 4e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 7   aagatgttcgggttcgggcaccaccacaa 35
           |||||||| ||||||||||||||||||||
Sbjct: 642 aagatgtttgggttcgggcaccaccacaa 670
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>dbj|AK103324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125K07, full
           insert sequence
          Length = 1512

 Score = 50.1 bits (25), Expect = 4e-04
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 7   aagatgttcgggttcgggcaccaccacaa 35
           |||||||| ||||||||||||||||||||
Sbjct: 78  aagatgtttgggttcgggcaccaccacaa 106
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>gb|BT017376.1| Zea mays clone EL01N0325G07.c mRNA sequence
          Length = 778

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 6   caagatgttcgggttcgggcaccac 30
           |||||||||||| ||||||||||||
Sbjct: 76  caagatgttcggcttcgggcaccac 100
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 6        caagatgttcgggttcgggcaccac 30
                |||||||||||| ||||||||||||
Sbjct: 11932620 caagatgttcggcttcgggcaccac 11932596
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 6        caagatgttcgggttcgggcaccac 30
                |||||||||||| ||||||||||||
Sbjct: 11929383 caagatgttcggcttcgggcaccac 11929359
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>emb|X95402.1|OSOSR40C1 O.sativa mRNA for novel protein, osr40c1
          Length = 1458

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 6  caagatgttcgggttcgggcaccac 30
          |||||||||||| ||||||||||||
Sbjct: 59 caagatgttcggcttcgggcaccac 83
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>dbj|AK069815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031K10,
          full insert sequence
          Length = 1765

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 6  caagatgttcgggttcgggcaccac 30
          |||||||||||| ||||||||||||
Sbjct: 72 caagatgttcggcttcgggcaccac 96
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>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0014I10, complete sequence
          Length = 113946

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 6     caagatgttcgggttcgggcaccac 30
             |||||||||||| ||||||||||||
Sbjct: 33882 caagatgttcggcttcgggcaccac 33858
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>ref|XM_500590.1| Yarrowia lipolytica CLIB122, YALI0B06985g predicted mRNA
          Length = 939

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 27  ccaccacaaggaccaggcg 45
           |||||||||||||||||||
Sbjct: 546 ccaccacaaggaccaggcg 564
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>emb|CR936809.1| Homo sapiens mRNA; cDNA DKFZp781M1056 (from clone DKFZp781M1056)
          Length = 5645

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   caccaccacaaggaccagg 43
            |||||||||||||||||||
Sbjct: 4734 caccaccacaaggaccagg 4716
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>dbj|AK128508.1| Homo sapiens cDNA FLJ46661 fis, clone TRACH3006717
          Length = 3856

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   caccaccacaaggaccagg 43
            |||||||||||||||||||
Sbjct: 3000 caccaccacaaggaccagg 2982
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>ref|NM_014738.2| Homo sapiens KIAA0195 (KIAA0195), mRNA
          Length = 5002

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   caccaccacaaggaccagg 43
            |||||||||||||||||||
Sbjct: 4129 caccaccacaaggaccagg 4111
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>dbj|AK094864.1| Homo sapiens cDNA FLJ37545 fis, clone BRCAN2027355
          Length = 2596

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   caccaccacaaggaccagg 43
            |||||||||||||||||||
Sbjct: 1743 caccaccacaaggaccagg 1725
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>gb|AC100787.17| Homo sapiens chromosome 17, clone CTD-2589J4, complete sequence
          Length = 233062

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 25     caccaccacaaggaccagg 43
              |||||||||||||||||||
Sbjct: 150409 caccaccacaaggaccagg 150391
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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 25      caccaccacaaggaccagg 43
               |||||||||||||||||||
Sbjct: 2919725 caccaccacaaggaccagg 2919743
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>dbj|D83779.1| Homo sapiens mRNA for KIAA0195 gene, partial cds
          Length = 5022

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   caccaccacaaggaccagg 43
            |||||||||||||||||||
Sbjct: 4169 caccaccacaaggaccagg 4151
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>gb|BC045540.1| Homo sapiens KIAA0195, mRNA (cDNA clone MGC:57170 IMAGE:5274473),
            complete cds
          Length = 5002

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   caccaccacaaggaccagg 43
            |||||||||||||||||||
Sbjct: 4129 caccaccacaaggaccagg 4111
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>gb|BC042942.1| Homo sapiens KIAA0195, mRNA (cDNA clone IMAGE:5295538), complete cds
          Length = 5448

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   caccaccacaaggaccagg 43
            |||||||||||||||||||
Sbjct: 4576 caccaccacaaggaccagg 4558
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>gb|AF070545.1|AF070545 Homo sapiens clone 24581 unknown mRNA
          Length = 1470

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  caccaccacaaggaccagg 43
           |||||||||||||||||||
Sbjct: 596 caccaccacaaggaccagg 578
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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     ccaccacaaggaccaggcg 45
              |||||||||||||||||||
Sbjct: 929426 ccaccacaaggaccaggcg 929408
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>ref|XM_590989.2| PREDICTED: Bos taurus similar to Leucine zipper-EF-hand containing
           transmembrane protein 1, mitochondrial precursor
           (LOC513324), mRNA
          Length = 2388

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 22  gggcaccaccacaaggaccagg 43
           |||||||||||||| |||||||
Sbjct: 669 gggcaccaccacaaagaccagg 648
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>ref|XM_544080.2| PREDICTED: Canis familiaris similar to Kappa-type opioid receptor
           (KOR-1) (LOC486951), mRNA
          Length = 1160

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 25  caccaccacaaggaccag 42
           ||||||||||||||||||
Sbjct: 840 caccaccacaaggaccag 823
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>ref|XM_390175.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG09999.1)
           partial mRNA
          Length = 1164

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 27  ccaccacaaggaccaggc 44
           ||||||||||||||||||
Sbjct: 931 ccaccacaaggaccaggc 914
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>gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome 17, complete sequence
          Length = 184952

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    accaccacaaggaccagg 43
             ||||||||||||||||||
Sbjct: 81946 accaccacaaggaccagg 81963
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 12      gttcgggttcgggcaccaccac 33
               ||||||| ||||||||||||||
Sbjct: 1848351 gttcgggctcgggcaccaccac 1848330
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>gb|AC175315.3| Mus musculus chromosome 1, clone wi1-1003N17, complete sequence
          Length = 44846

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    ccaccacaaggaccaggc 44
             ||||||||||||||||||
Sbjct: 34993 ccaccacaaggaccaggc 34976
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>gb|AC112778.7| Homo sapiens X BAC RP11-629O4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 83295

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    gcaccaccacaaggacca 41
             ||||||||||||||||||
Sbjct: 13194 gcaccaccacaaggacca 13177
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>gb|AC112919.5| Homo sapiens X BAC RP11-294J19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 82410

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    gcaccaccacaaggacca 41
             ||||||||||||||||||
Sbjct: 72269 gcaccaccacaaggacca 72252
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>gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N1, from chromosome 17,
              complete sequence
          Length = 254336

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     accaccacaaggaccagg 43
              ||||||||||||||||||
Sbjct: 245475 accaccacaaggaccagg 245458
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>gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6, complete sequence
          Length = 197070

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    accaccacaaggaccagg 43
             ||||||||||||||||||
Sbjct: 13787 accaccacaaggaccagg 13770
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>gb|AC068933.11| Homo sapiens chromosome 8, clone RP11-760J15, complete sequence
          Length = 183437

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     gcaccaccacaaggacca 41
              ||||||||||||||||||
Sbjct: 154621 gcaccaccacaaggacca 154604
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>gb|AC154458.2| Mus musculus BAC clone RP24-162I9 from chromosome 17, complete sequence
          Length = 183027

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     ccaccacaaggaccaggc 44
              ||||||||||||||||||
Sbjct: 126488 ccaccacaaggaccaggc 126471
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>ref|XM_221119.3| PREDICTED: Rattus norvegicus similar to mKIAA0195 protein (predicted)
            (LOC303677), mRNA
          Length = 5180

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 26   accaccacaaggaccagg 43
            ||||||||||||||||||
Sbjct: 4385 accaccacaaggaccagg 4368
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>gb|AF172113.1|AF172113 Equine infectious anemia virus clone 5 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653
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>gb|AF172112.1|AF172112 Equine infectious anemia virus clone 4 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653
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>gb|AF172111.1|AF172111 Equine infectious anemia virus clone 3 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653
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>gb|AF172110.1|AF172110 Equine infectious anemia virus clone 2 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653
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>gb|AF172109.1|AF172109 Equine infectious anemia virus clone 1 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653
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>gb|AF172108.1|AF172108 Equine infectious anemia virus clone 11 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653
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>gb|AF172105.1|AF172105 Equine infectious anemia virus clone 8 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653
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>gb|AF172104.1|AF172104 Equine infectious anemia virus clone 7 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653
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>gb|AF172103.1|AF172103 Equine infectious anemia virus clone 6 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653
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>gb|AF172102.1|AF172102 Equine infectious anemia virus clone 5 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653
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>gb|AF172101.1|AF172101 Equine infectious anemia virus clone 4 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653
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>gb|AF172100.1|AF172100 Equine infectious anemia virus clone 3 gag protein (gag) gene,
           partial cds
          Length = 1062

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  ggcaccaccacaaggacc 40
           ||||||||||||||||||
Sbjct: 636 ggcaccaccacaaggacc 653


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 326,083
Number of Sequences: 3902068
Number of extensions: 326083
Number of successful extensions: 65357
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65158
Number of HSP's gapped (non-prelim): 199
length of query: 49
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 29
effective length of database: 17,155,003,908
effective search space: 497495113332
effective search space used: 497495113332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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