ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast50a11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 381 bits (192), Expect = e-102 Identities = 279/308 (90%) Strand = Plus / Plus Query: 8 gtgcgcgacctccgggagaagtacgggcccatcttcaccatgcgcatgggccagcgcacc 67 |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 27971738 gtgcgcgacctccgcgagaagtacgggcccatcttcaccatgcggatggggcagcgcacg 27971797 Query: 68 ctcgtcatcgtcaccgacgccgacctcatccacgacgcactcgtcaagcagggccccatg 127 ||| || ||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct: 27971798 ctcatcgtcgtcaccgacgccgacctcatccacgacgcgctcgtcaagcagggcgcggcg 27971857 Query: 128 ttcgccagccgcccggcggacagccccatccgcctcctcttcagcgtcggcaagtgcacc 187 |||||||||||||| | ||||||||| | || || |||||||||||||||||||||||| Sbjct: 27971858 ttcgccagccgccccgaggacagcccgacgcggctgctcttcagcgtcggcaagtgcacc 27971917 Query: 188 gtcaactccgcgccctacggcccgctctggcgcgcgctccgccggaacttcgtcgccgag 247 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 27971918 gtcaactcggcgccgtacggcccgctctggcgcgcgctccgccgcaacttcgtcgccgag 27971977 Query: 248 atcgtgtcgccgcagcgggtcaagggcttctcgtggatccgggagtgggccatgggcaac 307 ||||||||||||| |||||| ||||| |||||||||||||| ||||||||| | || | | Sbjct: 27971978 atcgtgtcgccgccgcgggtgaagggattctcgtggatccgcgagtgggccgtcgggagc 27972037 Query: 308 cacctccg 315 |||||||| Sbjct: 27972038 cacctccg 27972045
>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0547F09 Length = 140615 Score = 381 bits (192), Expect = e-102 Identities = 279/308 (90%) Strand = Plus / Plus Query: 8 gtgcgcgacctccgggagaagtacgggcccatcttcaccatgcgcatgggccagcgcacc 67 |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 16557 gtgcgcgacctccgcgagaagtacgggcccatcttcaccatgcggatggggcagcgcacg 16616 Query: 68 ctcgtcatcgtcaccgacgccgacctcatccacgacgcactcgtcaagcagggccccatg 127 ||| || ||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct: 16617 ctcatcgtcgtcaccgacgccgacctcatccacgacgcgctcgtcaagcagggcgcggcg 16676 Query: 128 ttcgccagccgcccggcggacagccccatccgcctcctcttcagcgtcggcaagtgcacc 187 |||||||||||||| | ||||||||| | || || |||||||||||||||||||||||| Sbjct: 16677 ttcgccagccgccccgaggacagcccgacgcggctgctcttcagcgtcggcaagtgcacc 16736 Query: 188 gtcaactccgcgccctacggcccgctctggcgcgcgctccgccggaacttcgtcgccgag 247 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 16737 gtcaactcggcgccgtacggcccgctctggcgcgcgctccgccgcaacttcgtcgccgag 16796 Query: 248 atcgtgtcgccgcagcgggtcaagggcttctcgtggatccgggagtgggccatgggcaac 307 ||||||||||||| |||||| ||||| |||||||||||||| ||||||||| | || | | Sbjct: 16797 atcgtgtcgccgccgcgggtgaagggattctcgtggatccgcgagtgggccgtcgggagc 16856 Query: 308 cacctccg 315 |||||||| Sbjct: 16857 cacctccg 16864
>dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0003H08 Length = 142068 Score = 381 bits (192), Expect = e-102 Identities = 279/308 (90%) Strand = Plus / Plus Query: 8 gtgcgcgacctccgggagaagtacgggcccatcttcaccatgcgcatgggccagcgcacc 67 |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 125661 gtgcgcgacctccgcgagaagtacgggcccatcttcaccatgcggatggggcagcgcacg 125720 Query: 68 ctcgtcatcgtcaccgacgccgacctcatccacgacgcactcgtcaagcagggccccatg 127 ||| || ||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct: 125721 ctcatcgtcgtcaccgacgccgacctcatccacgacgcgctcgtcaagcagggcgcggcg 125780 Query: 128 ttcgccagccgcccggcggacagccccatccgcctcctcttcagcgtcggcaagtgcacc 187 |||||||||||||| | ||||||||| | || || |||||||||||||||||||||||| Sbjct: 125781 ttcgccagccgccccgaggacagcccgacgcggctgctcttcagcgtcggcaagtgcacc 125840 Query: 188 gtcaactccgcgccctacggcccgctctggcgcgcgctccgccggaacttcgtcgccgag 247 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 125841 gtcaactcggcgccgtacggcccgctctggcgcgcgctccgccgcaacttcgtcgccgag 125900 Query: 248 atcgtgtcgccgcagcgggtcaagggcttctcgtggatccgggagtgggccatgggcaac 307 ||||||||||||| |||||| ||||| |||||||||||||| ||||||||| | || | | Sbjct: 125901 atcgtgtcgccgccgcgggtgaagggattctcgtggatccgcgagtgggccgtcgggagc 125960 Query: 308 cacctccg 315 |||||||| Sbjct: 125961 cacctccg 125968
>dbj|AK064920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N03, full insert sequence Length = 1943 Score = 367 bits (185), Expect = 1e-98 Identities = 279/309 (90%), Gaps = 1/309 (0%) Strand = Plus / Plus Query: 8 gtgcgcgacctccgggagaagtacgggcccatcttcaccatgcgcatgggccagcgcacc 67 |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 266 gtgcgcgacctccgcgagaagtacgggcccatcttcaccatgcggatggggcagcgcacg 325 Query: 68 ctcgtcatcgtcaccgacgccgacctcatccacgacgcactcgtcaagcagggccccatg 127 ||| || ||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct: 326 ctcatcgtcgtcaccgacgccgacctcatccacgacgcgctcgtcaagcagggcgcggcg 385 Query: 128 -ttcgccagccgcccggcggacagccccatccgcctcctcttcagcgtcggcaagtgcac 186 |||||||||||||| | ||||||||| | || || ||||||||||||||||||||||| Sbjct: 386 tttcgccagccgccccgaggacagcccgacgcggctgctcttcagcgtcggcaagtgcac 445 Query: 187 cgtcaactccgcgccctacggcccgctctggcgcgcgctccgccggaacttcgtcgccga 246 ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 446 cgtcaactcggcgccgtacggcccgctctggcgcgcgctccgccgcaacttcgtcgccga 505 Query: 247 gatcgtgtcgccgcagcgggtcaagggcttctcgtggatccgggagtgggccatgggcaa 306 |||||||||||||| |||||| ||||| |||||||||||||| ||||||||| | || | Sbjct: 506 gatcgtgtcgccgccgcgggtgaagggattctcgtggatccgcgagtgggccgtcgggag 565 Query: 307 ccacctccg 315 ||||||||| Sbjct: 566 ccacctccg 574
>ref|NM_194793.1| Oryza sativa (japonica cultivar-group) putative cytochrome P450 (OSJNBa0029P06.11), mRNA Length = 1593 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 202 ctacggcccgctctggcgcgcgctccgccggaacttcgtcgccgag 247 ||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 384 ctacggcccgctctggcgcctcttccgccgcaacttcgtcgccgag 429
>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence Length = 151533 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 202 ctacggcccgctctggcgcgcgctccgccggaacttcgtcgccgag 247 ||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 91023 ctacggcccgctctggcgcctcttccgccgcaacttcgtcgccgag 90978
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 202 ctacggcccgctctggcgcgcgctccgccggaacttcgtcgccgag 247 ||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 2434291 ctacggcccgctctggcgcctcttccgccgcaacttcgtcgccgag 2434246 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 acggcccgctctggcgcgcgctccgccg 231 |||||||||||||| |||||||||||| Sbjct: 19152676 acggcccgctctgggtcgcgctccgccg 19152703
>dbj|AK067458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107H17, full insert sequence Length = 1792 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 202 ctacggcccgctctggcgcgcgctccgccggaacttcgtcgccgag 247 ||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 444 ctacggcccgctctggcgcctcttccgccgcaacttcgtcgccgag 489
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 202 ctacggcccgctctggcgcgcgctccgccggaacttcgtcgccgag 247 ||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 2434242 ctacggcccgctctggcgcctcttccgccgcaacttcgtcgccgag 2434197 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 acggcccgctctggcgcgcgctccgccg 231 |||||||||||||| |||||||||||| Sbjct: 19163952 acggcccgctctgggtcgcgctccgccg 19163979
>ref|XM_483643.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2102 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Plus Query: 196 cgcgccctacggcccgctctggcgcgcgctccgccg 231 ||||||||||||| || |||||||||||||||||| Sbjct: 585 cgcgccctacggcacgtactggcgcgcgctccgccg 620
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Minus Query: 196 cgcgccctacggcccgctctggcgcgcgctccgccg 231 ||||||||||||| || |||||||||||||||||| Sbjct: 27415011 cgcgccctacggcacgtactggcgcgcgctccgccg 27414976
>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0544G09 Length = 137481 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Minus Query: 196 cgcgccctacggcccgctctggcgcgcgctccgccg 231 ||||||||||||| || |||||||||||||||||| Sbjct: 41806 cgcgccctacggcacgtactggcgcgcgctccgccg 41771
>dbj|AK072163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131L23, full insert sequence Length = 2102 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Plus Query: 196 cgcgccctacggcccgctctggcgcgcgctccgccg 231 ||||||||||||| || |||||||||||||||||| Sbjct: 585 cgcgccctacggcacgtactggcgcgcgctccgccg 620
>ref|NM_184026.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1575 Score = 44.1 bits (22), Expect = 0.28 Identities = 40/46 (86%) Strand = Plus / Plus Query: 175 cggcaagtgcaccgtcaactccgcgccctacggcccgctctggcgc 220 |||| |||||||||||| ||| ||||| || || |||||||||||| Sbjct: 360 cggccagtgcaccgtcagctctgcgccgtatggtccgctctggcgc 405
>gb|AF255014.2|AF255014 Citrus sinensis cinnamate 4-hydroxylase CYP73 (C4H2) mRNA, complete cds Length = 1871 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Plus Query: 50 cgcatgggccagcgcaccctcgtcatcgtc 79 |||||||||||||||| ||||||| ||||| Sbjct: 367 cgcatgggccagcgcaacctcgtcgtcgtc 396
>gb|AF378333.1|AF378333 Citrus x paradisi cinnamate 4-hydroxylase mRNA, complete cds Length = 1745 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Plus Query: 50 cgcatgggccagcgcaccctcgtcatcgtc 79 |||||||||||||||| ||||||| ||||| Sbjct: 228 cgcatgggccagcgcaacctcgtcgtcgtc 257
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.28 Identities = 40/46 (86%) Strand = Plus / Plus Query: 175 cggcaagtgcaccgtcaactccgcgccctacggcccgctctggcgc 220 |||| |||||||||||| ||| ||||| || || |||||||||||| Sbjct: 13961202 cggccagtgcaccgtcagctctgcgccgtatggtccgctctggcgc 13961247
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 44.1 bits (22), Expect = 0.28 Identities = 40/46 (86%) Strand = Plus / Plus Query: 175 cggcaagtgcaccgtcaactccgcgccctacggcccgctctggcgc 220 |||| |||||||||||| ||| ||||| || || |||||||||||| Sbjct: 121504 cggccagtgcaccgtcagctctgcgccgtatggtccgctctggcgc 121549
>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463A02 Length = 151041 Score = 44.1 bits (22), Expect = 0.28 Identities = 40/46 (86%) Strand = Plus / Plus Query: 175 cggcaagtgcaccgtcaactccgcgccctacggcccgctctggcgc 220 |||| |||||||||||| ||| ||||| || || |||||||||||| Sbjct: 36947 cggccagtgcaccgtcagctctgcgccgtatggtccgctctggcgc 36992
>gb|AY943952.1| Streptomyces sp. F11 plasmid pFP11, complete sequence Length = 35159 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 75 tcgtcaccgacgccgacctcatccac 100 |||||||||||||||||||| ||||| Sbjct: 14514 tcgtcaccgacgccgacctcttccac 14489
>gb|AC159298.3| Mus musculus BAC clone RP23-265N1 from chromosome 5, complete sequence Length = 175995 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 ggagtgggccatgggcaacca 309 ||||||||||||||||||||| Sbjct: 32025 ggagtgggccatgggcaacca 32045
>ref|XM_387730.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07554.1) partial mRNA Length = 882 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 63 gcaccctcgtcatcgtcaccgacgc 87 ||||||||||||||||| ||||||| Sbjct: 878 gcaccctcgtcatcgtcgccgacgc 854
>gb|AC058789.20| Mus musculus strain C57BL/6J clone rp23-428p20 map 5, complete sequence Length = 181121 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 ggagtgggccatgggcaacca 309 ||||||||||||||||||||| Sbjct: 29888 ggagtgggccatgggcaacca 29908
>gb|AC151965.2| Mus musculus BAC clone RP24-173B17 from chromosome 5, complete sequence Length = 221687 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ggagtgggccatgggcaacca 309 ||||||||||||||||||||| Sbjct: 60765 ggagtgggccatgggcaacca 60745
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 cgccgacctcatccacgacgc 105 ||||||||||||||||||||| Sbjct: 2209707 cgccgacctcatccacgacgc 2209687
>gb|AC175116.2| Mus musculus BAC clone RP23-396H16 from chromosome 5, complete sequence Length = 210409 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 ggagtgggccatgggcaacca 309 ||||||||||||||||||||| Sbjct: 23946 ggagtgggccatgggcaacca 23966
>gb|U68299.1|MCU68299 Mouse cytomegalovirus 1 complete genomic sequence Length = 230278 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 tcgtcatcgtcaccgacgccg 89 ||||||||||||||||||||| Sbjct: 109382 tcgtcatcgtcaccgacgccg 109362
>gb|AC151736.6| Mus musculus BAC clone RP23-9L16 from chromosome 8, complete sequence Length = 239812 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccgggagaagtacgggccc 37 |||||||||||||||||||| Sbjct: 231027 tccgggagaagtacgggccc 231046
>ref|NM_197306.1| Oryza sativa (japonica cultivar-group) putative cytochrome P450 (OSJNBa0005K07.19), mRNA Length = 1272 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 acggcccgctctggcgcgcgctccgccg 231 |||||||||||||| |||||||||||| Sbjct: 314 acggcccgctctgggtcgcgctccgccg 341
>gb|BT021851.1| Bos taurus hypothetical protein FLJ14525 (FLJ14525), mRNA, complete cds Length = 1059 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccgggagaagtacgggccc 37 |||||||||||||||||||| Sbjct: 209 tccgggagaagtacgggccc 228
>ref|NM_001040592.1| Bos taurus hypothetical protein FLJ14525 (FLJ14525), mRNA Length = 1059 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccgggagaagtacgggccc 37 |||||||||||||||||||| Sbjct: 209 tccgggagaagtacgggccc 228
>gb|AE009365.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 135 of 187 of the complete sequence Length = 10684 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 cctcgtcatcgtcaccgacgccga 90 ||||||||||| |||||||||||| Sbjct: 8486 cctcgtcatcgccaccgacgccga 8509
>gb|AE008248.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 52 of 187 of the complete sequence Length = 13670 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 cctcgtcatcgtcaccgacgccga 90 ||||||||||| |||||||||||| Sbjct: 8569 cctcgtcatcgccaccgacgccga 8546
>gb|AC073867.6| Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete sequence Length = 82909 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 acggcccgctctggcgcgcgctccgccg 231 |||||||||||||| |||||||||||| Sbjct: 5020 acggcccgctctgggtcgcgctccgccg 5047
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 tcgtcatcgtcaccgacgccgacc 92 ||||||||| |||||||||||||| Sbjct: 122920 tcgtcatcggcaccgacgccgacc 122897
>emb|AJ441123.1|SOL441123 Streptomyces olivaceoviridis ORF1, ORF2, ptsB, ptsC1, and ptsC2 genes Length = 5895 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 tcgtcatcgtcaccgacgccgacc 92 ||||||||| |||||||||||||| Sbjct: 927 tcgtcatcggcaccgacgccgacc 904
>ref|NM_166060.1| Drosophila melanogaster CG30077-RA (CG30077), mRNA Length = 432 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 cttcagcgtcggcaagtgca 185 |||||||||||||||||||| Sbjct: 395 cttcagcgtcggcaagtgca 414
>gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 genomic sequence, complete sequence Length = 113606 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 acggcccgctctggcgcgcgctccgccg 231 |||||||||||||| |||||||||||| Sbjct: 105247 acggcccgctctgggtcgcgctccgccg 105274
>dbj|AK154813.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630107J15 product:hypothetical protein, full insert sequence Length = 3130 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccgggagaagtacgggccc 37 |||||||||||||||||||| Sbjct: 161 tccgggagaagtacgggccc 180
>dbj|AK155222.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630209C04 product:hypothetical protein, full insert sequence Length = 1285 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccgggagaagtacgggccc 37 |||||||||||||||||||| Sbjct: 190 tccgggagaagtacgggccc 209
>dbj|AK170562.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630107P03 product:hypothetical protein, full insert sequence Length = 933 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccgggagaagtacgggccc 37 |||||||||||||||||||| Sbjct: 180 tccgggagaagtacgggccc 199
>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone BACR07P02, complete sequence Length = 160920 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 cttcagcgtcggcaagtgca 185 |||||||||||||||||||| Sbjct: 743 cttcagcgtcggcaagtgca 762
>dbj|AK009458.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310022B05 product:hypothetical protein, full insert sequence Length = 1249 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccgggagaagtacgggccc 37 |||||||||||||||||||| Sbjct: 161 tccgggagaagtacgggccc 180
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 64 caccctcgtcatcgtcaccgacgccgacctca 95 |||| ||||||||| | ||||||||||||||| Sbjct: 1473507 caccgtcgtcatcgaccccgacgccgacctca 1473476
>dbj|AK084773.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330041B20 product:hypothetical protein, full insert sequence Length = 3126 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccgggagaagtacgggccc 37 |||||||||||||||||||| Sbjct: 154 tccgggagaagtacgggccc 173
>gb|BT022317.1| Drosophila melanogaster IP04570 full insert cDNA Length = 593 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 cttcagcgtcggcaagtgca 185 |||||||||||||||||||| Sbjct: 367 cttcagcgtcggcaagtgca 386
>gb|AC008306.3|AC008306 Drosophila melanogaster, chromosome 2R, region 51B-51B, BAC clone BACR27M04, complete sequence Length = 169689 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 cttcagcgtcggcaagtgca 185 |||||||||||||||||||| Sbjct: 120859 cttcagcgtcggcaagtgca 120878
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cagccccatccgcctcctct 167 |||||||||||||||||||| Sbjct: 632353 cagccccatccgcctcctct 632334
>ref|XM_574254.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310022B05 (LOC498967), mRNA Length = 2982 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccgggagaagtacgggccc 37 |||||||||||||||||||| Sbjct: 185 tccgggagaagtacgggccc 204
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 gcccgctctggcgcgcgctc 226 |||||||||||||||||||| Sbjct: 562100 gcccgctctggcgcgcgctc 562081
>gb|AE003814.3| Drosophila melanogaster chromosome 2R, section 36 of 73 of the complete sequence Length = 254438 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 cttcagcgtcggcaagtgca 185 |||||||||||||||||||| Sbjct: 225133 cttcagcgtcggcaagtgca 225152
>gb|AC135015.3| Mus musculus BAC clone RP24-227L14 from 8, complete sequence Length = 169193 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tccgggagaagtacgggccc 37 |||||||||||||||||||| Sbjct: 30503 tccgggagaagtacgggccc 30522
>gb|M30939.1|DROTRA2A Drosophila melanogaster transformer-2 protein (tra-2) gene, complete cds Length = 3911 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cttcagcgtcggcaagtgca 185 |||||||||||||||||||| Sbjct: 3169 cttcagcgtcggcaagtgca 3150 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,613,162 Number of Sequences: 3902068 Number of extensions: 1613162 Number of successful extensions: 35087 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 34460 Number of HSP's gapped (non-prelim): 627 length of query: 326 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 304 effective length of database: 17,147,199,772 effective search space: 5212748730688 effective search space used: 5212748730688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
