ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast50a05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 270 bits (136), Expect = 3e-69 Identities = 280/324 (86%), Gaps = 3/324 (0%) Strand = Plus / Plus Query: 92 atggcgcggtgcagcaacgggctgctgggcctgctgaacgcgggggtgctggtcctggcc 151 |||||||||||||||||||| || || ||||| || ||||| || ||||||||||| ||| Sbjct: 26368959 atggcgcggtgcagcaacggcctcctcggcctcctcaacgccggcgtgctggtcctcgcc 26369018 Query: 152 ctggcggtgctgggcggcggaatctggctgagccaccgggcggccaccacggactgcgag 211 ||| ||||||||||||||| |||||||| ||| |||| || |||||||| ||||||||| Sbjct: 26369019 gtggtggtgctgggcggcgggatctggctcagcaaccgcgccgccaccactgactgcgag 26369078 Query: 212 cggttcctggagcggccggtcatcgcgctgggggcgctgctcctggcgctgtccctcgcg 271 |||||| ||||||| || ||| |||||||||| | ||| ||||| ||||| |||||||| Sbjct: 26369079 cggttcatggagcgccccgtcgtcgcgctgggcgtgctcctccttgcgctctccctcgcc 26369138 Query: 272 gggctggcgggatccctctgcggcgcctcctgcctcctctggctctacctcgtcgcgctc 331 || || || || | ||||||||||||||||||||||| |||||||||||| |||||||| Sbjct: 26369139 ggcctcgccggcgcgctctgcggcgcctcctgcctcctgtggctctacctcctcgcgctc 26369198 Query: 332 ttcatcctcatcg-cgctcctccccgtcttcaccgccttcgccttcgtcgtc-ccaaccg 389 ||| |||||||| ||| |||| ||||||||||| |||||||||||||||| ||||||| Sbjct: 26369199 ttcctcctcatcctcgc-cctcttcgtcttcaccgtcttcgccttcgtcgtcaccaaccg 26369257 Query: 390 cggcgccggctccgtcgtctccgg 413 ||||||||||| ||||||||||| Sbjct: 26369258 cggcgccggctgggtcgtctccgg 26369281 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 342 tcgcgctcctccccgtcttcaccgccttcgcc 373 |||||||||||| ||||||||||||| ||||| Sbjct: 25974686 tcgcgctcctcctcgtcttcaccgccgtcgcc 25974655
>dbj|AP003565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0085J13 Length = 130185 Score = 270 bits (136), Expect = 3e-69 Identities = 280/324 (86%), Gaps = 3/324 (0%) Strand = Plus / Plus Query: 92 atggcgcggtgcagcaacgggctgctgggcctgctgaacgcgggggtgctggtcctggcc 151 |||||||||||||||||||| || || ||||| || ||||| || ||||||||||| ||| Sbjct: 66686 atggcgcggtgcagcaacggcctcctcggcctcctcaacgccggcgtgctggtcctcgcc 66745 Query: 152 ctggcggtgctgggcggcggaatctggctgagccaccgggcggccaccacggactgcgag 211 ||| ||||||||||||||| |||||||| ||| |||| || |||||||| ||||||||| Sbjct: 66746 gtggtggtgctgggcggcgggatctggctcagcaaccgcgccgccaccactgactgcgag 66805 Query: 212 cggttcctggagcggccggtcatcgcgctgggggcgctgctcctggcgctgtccctcgcg 271 |||||| ||||||| || ||| |||||||||| | ||| ||||| ||||| |||||||| Sbjct: 66806 cggttcatggagcgccccgtcgtcgcgctgggcgtgctcctccttgcgctctccctcgcc 66865 Query: 272 gggctggcgggatccctctgcggcgcctcctgcctcctctggctctacctcgtcgcgctc 331 || || || || | ||||||||||||||||||||||| |||||||||||| |||||||| Sbjct: 66866 ggcctcgccggcgcgctctgcggcgcctcctgcctcctgtggctctacctcctcgcgctc 66925 Query: 332 ttcatcctcatcg-cgctcctccccgtcttcaccgccttcgccttcgtcgtc-ccaaccg 389 ||| |||||||| ||| |||| ||||||||||| |||||||||||||||| ||||||| Sbjct: 66926 ttcctcctcatcctcgc-cctcttcgtcttcaccgtcttcgccttcgtcgtcaccaaccg 66984 Query: 390 cggcgccggctccgtcgtctccgg 413 ||||||||||| ||||||||||| Sbjct: 66985 cggcgccggctgggtcgtctccgg 67008
>gb|AY224518.1| Oryza sativa (japonica cultivar-group) isolate 20462 senescence-associated protein-like protein mRNA, complete cds Length = 831 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 301 ctgcctcctctggctctacctcgtcgcgctcttcatcctcatcgcgctcctccccgtctt 360 ||||||||||||| ||||||||||||| | ||| ||||||||| ||||| | ||| Sbjct: 213 ctgcctcctctggttctacctcgtcgccatgttcgtcctcatcgtcgtcctcttctgctt 272 Query: 361 caccgccttcgccttcgtcgtc 382 ||||| |||||||||||||||| Sbjct: 273 caccgtcttcgccttcgtcgtc 294 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 gtgctgggcggcggaatctggctg 181 |||||||||||||| ||||||||| Sbjct: 70 gtgctgggcggcggcatctggctg 93
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 301 ctgcctcctctggctctacctcgtcgcgctcttcatcctcatcgcgctcctccccgtctt 360 ||||||||||||| ||||||||||||| | ||| ||||||||| ||||| | ||| Sbjct: 15389903 ctgcctcctctggttctacctcgtcgccatgttcgtcctcatcgtcgtcctcttctgctt 15389962 Query: 361 caccgccttcgccttcgtcgtc 382 ||||| |||||||||||||||| Sbjct: 15389963 caccgtcttcgccttcgtcgtc 15389984 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 gtgctgggcggcggaatctggctg 181 |||||||||||||| ||||||||| Sbjct: 15389760 gtgctgggcggcggcatctggctg 15389783
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 301 ctgcctcctctggctctacctcgtcgcgctcttcatcctcatcgcgctcctccccgtctt 360 ||||||||||||| ||||||||||||| | ||| ||||||||| ||||| | ||| Sbjct: 39195 ctgcctcctctggttctacctcgtcgccatgttcgtcctcatcgtcgtcctcttctgctt 39254 Query: 361 caccgccttcgccttcgtcgtc 382 ||||| |||||||||||||||| Sbjct: 39255 caccgtcttcgccttcgtcgtc 39276 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 gtgctgggcggcggaatctggctg 181 |||||||||||||| ||||||||| Sbjct: 39052 gtgctgggcggcggcatctggctg 39075
>dbj|AK106158.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A07, full insert sequence Length = 1201 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 301 ctgcctcctctggctctacctcgtcgcgctcttcatcctcatcgcgctcctccccgtctt 360 ||||||||||||| ||||||||||||| | ||| ||||||||| ||||| | ||| Sbjct: 313 ctgcctcctctggttctacctcgtcgccatgttcgtcctcatcgtcgtcctcttctgctt 372 Query: 361 caccgccttcgccttcgtcgtc 382 ||||| |||||||||||||||| Sbjct: 373 caccgtcttcgccttcgtcgtc 394 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 gtgctgggcggcggaatctggctg 181 |||||||||||||| ||||||||| Sbjct: 170 gtgctgggcggcggcatctggctg 193
>dbj|AK065366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020D06, full insert sequence Length = 2276 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 301 ctgcctcctctggctctacctcgtcgcgctcttcatcctcatcgcgctcctccccgtctt 360 ||||||||||||| ||||||||||||| | ||| ||||||||| ||||| | ||| Sbjct: 320 ctgcctcctctggttctacctcgtcgccatgttcgtcctcatcgtcgtcctcttctgctt 379 Query: 361 caccgccttcgccttcgtcgtc 382 ||||| |||||||||||||||| Sbjct: 380 caccgtcttcgccttcgtcgtc 401 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 gtgctgggcggcggaatctggctg 181 |||||||||||||| ||||||||| Sbjct: 177 gtgctgggcggcggcatctggctg 200
>dbj|AK061801.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H10, full insert sequence Length = 1216 Score = 52.0 bits (26), Expect = 0.001 Identities = 68/82 (82%) Strand = Plus / Plus Query: 301 ctgcctcctctggctctacctcgtcgcgctcttcatcctcatcgcgctcctccccgtctt 360 ||||||||||||| ||||||||||||| | ||| ||||||||| ||||| | ||| Sbjct: 315 ctgcctcctctggttctacctcgtcgccatgttcgtcctcatcgtcgtcctcttctgctt 374 Query: 361 caccgccttcgccttcgtcgtc 382 || || |||||||||||||||| Sbjct: 375 catcgtcttcgccttcgtcgtc 396 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 gtgctgggcggcggaatctggctg 181 |||||||||||||| ||||||||| Sbjct: 172 gtgctgggcggcggcatctggctg 195
>ref|XM_482646.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1061 Score = 50.1 bits (25), Expect = 0.006 Identities = 59/69 (85%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 349 cctccccgtcttcaccgccttcgccttcgtcgtc-ccaaccgcggcgccggctccgtcgt 407 ||||| || |||||||||||||||||| | |||| ||||||| ||||||||| | ||| Sbjct: 349 cctcctcggcttcaccgccttcgcctttgccgtcaccaaccgtggcgccggcgaggccgt 408 Query: 408 ctccggccg 416 ||||||||| Sbjct: 409 ctccggccg 417
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.006 Identities = 59/69 (85%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 349 cctccccgtcttcaccgccttcgccttcgtcgtc-ccaaccgcggcgccggctccgtcgt 407 ||||| || |||||||||||||||||| | |||| ||||||| ||||||||| | ||| Sbjct: 21620151 cctcctcggcttcaccgccttcgcctttgccgtcaccaaccgtggcgccggcgaggccgt 21620210 Query: 408 ctccggccg 416 ||||||||| Sbjct: 21620211 ctccggccg 21620219
>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0708B04 Length = 170523 Score = 50.1 bits (25), Expect = 0.006 Identities = 59/69 (85%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 349 cctccccgtcttcaccgccttcgccttcgtcgtc-ccaaccgcggcgccggctccgtcgt 407 ||||| || |||||||||||||||||| | |||| ||||||| ||||||||| | ||| Sbjct: 80325 cctcctcggcttcaccgccttcgcctttgccgtcaccaaccgtggcgccggcgaggccgt 80384 Query: 408 ctccggccg 416 ||||||||| Sbjct: 80385 ctccggccg 80393
>dbj|AK110630.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-B08, full insert sequence Length = 1061 Score = 50.1 bits (25), Expect = 0.006 Identities = 59/69 (85%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 349 cctccccgtcttcaccgccttcgccttcgtcgtc-ccaaccgcggcgccggctccgtcgt 407 ||||| || |||||||||||||||||| | |||| ||||||| ||||||||| | ||| Sbjct: 349 cctcctcggcttcaccgccttcgcctttgccgtcaccaaccgtggcgccggcgaggccgt 408 Query: 408 ctccggccg 416 ||||||||| Sbjct: 409 ctccggccg 417
>gb|AY758355.1| Zea mays senescence-associated protein DH mRNA, complete cds Length = 1180 Score = 48.1 bits (24), Expect = 0.023 Identities = 52/60 (86%), Gaps = 1/60 (1%) Strand = Plus / Plus Query: 358 cttcaccgccttcgccttcgtcgtc-ccaaccgcggcgccggctccgtcgtctccggccg 416 |||||||| |||||||||||||||| ||||| | ||||||||| | |||||||||||| Sbjct: 412 cttcaccgtcttcgccttcgtcgtcaccaacaggggcgccggcgaggccgtctccggccg 471
>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1226_A12 Length = 113025 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 342 tcgcgctcctccccgtcttcaccgccttcgcc 373 |||||||||||| ||||||||||||| ||||| Sbjct: 12544 tcgcgctcctcctcgtcttcaccgccgtcgcc 12513
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 342 tcgcgctcctccccgtcttcaccgccttcgcc 373 |||||||||||| ||||||||||||| ||||| Sbjct: 129784 tcgcgctcctcctcgtcttcaccgccgtcgcc 129753
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 355 cgtcttcaccgccttcgccttcg 377 ||||||||||||||||||||||| Sbjct: 2822512 cgtcttcaccgccttcgccttcg 2822490
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 237 cgctgggggcgctgctcctggcgctg 262 |||||||||||||||| ||||||||| Sbjct: 467972 cgctgggggcgctgctgctggcgctg 467947
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 145 cctggccctggcggtgctgggcggcg 170 |||||||||||||| ||||||||||| Sbjct: 236998 cctggccctggcggcgctgggcggcg 236973 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 gtcctggccctggcggtgctgggcg 167 ||||||||||||||| ||||||||| Sbjct: 204591 gtcctggccctggcgctgctgggcg 204615
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ggactgcgagcggttcctggag 223 |||||||||||||||||||||| Sbjct: 1186026 ggactgcgagcggttcctggag 1186047 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 ggctgagccaccgggcggcca 197 ||||||||||||||||||||| Sbjct: 3061829 ggctgagccaccgggcggcca 3061809 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 141 tggtcctggccctggcggtgctggg 165 |||||||||| |||||||||||||| Sbjct: 2753489 tggtcctggcgctggcggtgctggg 2753465 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 tggccctggcggtgctgggcggcg 170 ||||||||||| |||||||||||| Sbjct: 3413515 tggccctggcgctgctgggcggcg 3413492
>ref|NM_183463.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1134 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 cgtcccaaccgcggcgccggctccg 403 ||||||||||||| ||||||||||| Sbjct: 286 cgtcccaaccgcgccgccggctccg 310
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 tcaccgccttcgccttcgtcg 380 ||||||||||||||||||||| Sbjct: 5784702 tcaccgccttcgccttcgtcg 5784682
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 tcaccgccttcgccttcgtcg 380 ||||||||||||||||||||| Sbjct: 486204 tcaccgccttcgccttcgtcg 486224
>emb|Y10074.1|DMLETH D.melanogaster l(2)tid, l(2)not & l(2)rot genes (strain apxo) Length = 12417 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 8971 cctggcccaggcggtgctgggcggc 8995 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 3646 cctggcccaggcggtgctgggcggc 3670
>emb|X98094.1|DMCH2RA D.melanogaster genomic sequence from right arm of chromosome 2 Length = 10289 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 6889 cctggcccaggcggtgctgggcggc 6913
>emb|X95251.1|DMTIDT4M D.melanogaster l(2)tid gene (strain bIf, l(2)tid4 mutant) Length = 3940 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 2481 cctggcccaggcggtgctgggcggc 2505
>emb|X95249.1|DMTIDT2M D.melanogaster l(2)tid gene (strain b IF, l(2)tid2 mutant) Length = 3917 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 2481 cctggcccaggcggtgctgggcggc 2505
>emb|X95247.1|DMTIDB D.melanogaster l(2)tid gene (strain bIf) Length = 3940 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 2481 cctggcccaggcggtgctgggcggc 2505
>emb|X95242.1|DMTIDA D.melanogaster l(2)tid gene (strain apxo) Length = 3935 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 2476 cctggcccaggcggtgctgggcggc 2500
>emb|X95241.1|DMTNRO D.melanogaster l(2)tid, l(2)not, and l(2)rot genes (strain Oregon R) Length = 7047 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 3647 cctggcccaggcggtgctgggcggc 3671
>emb|X77822.1|DMTID56 D.melanogaster gene encoding Tid(56) protein Length = 2539 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 1696 cctggcccaggcggtgctgggcggc 1720
>emb|AJ561198.1|NSP561198 Actinomadura sp. ATCC 39727 gene cluster for biosynthesis of glycopeptide antibiotic A40926, strain ATCC 39727 Length = 89153 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 133 gggggtgctggtcctggccctggcg 157 |||| |||||||||||||||||||| Sbjct: 74481 ggggctgctggtcctggccctggcg 74505
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 tcaccgccttcgccttcgtcg 380 ||||||||||||||||||||| Sbjct: 6620763 tcaccgccttcgccttcgtcg 6620743
>emb|X95246.1|DMROTB D.melanogaster l(2)rot gene (strain bIf) Length = 2818 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 1555 cctggcccaggcggtgctgggcggc 1531
>emb|X95245.1|DMROTA D.melanogaster l(2)rot gene (strain apxo) Length = 2812 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 1555 cctggcccaggcggtgctgggcggc 1531
>emb|X77821.1|DMROT57 D.melanogaster mRNA for Rot(57) protein Length = 2812 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 1555 cctggcccaggcggtgctgggcggc 1531
>gb|AE005713.1| Caulobacter crescentus CB15 section 39 of 359 of the complete genome Length = 10234 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 ggccctggcggtgctgggcgg 168 ||||||||||||||||||||| Sbjct: 3850 ggccctggcggtgctgggcgg 3830
>ref|NM_206210.1| Drosophila melanogaster lethal (2) tumorous imaginal discs CG5504-RB, transcript variant B (l(2)tid), mRNA Length = 2035 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 1324 cctggcccaggcggtgctgggcggc 1348
>ref|NM_206209.1| Drosophila melanogaster lethal (2) tumorous imaginal discs CG5504-RC, transcript variant C (l(2)tid), mRNA Length = 2020 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 1324 cctggcccaggcggtgctgggcggc 1348
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 gcgctgggggcgctgctcctggcgc 260 ||||||||||||||||||| ||||| Sbjct: 1960585 gcgctgggggcgctgctccaggcgc 1960609 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 gcggtgctgggcggcggaatc 175 ||||||||||||||||||||| Sbjct: 556613 gcggtgctgggcggcggaatc 556593
>ref|NM_080193.3| Drosophila melanogaster lethal (2) tumorous imaginal discs CG5504-RA, transcript variant A (l(2)tid), mRNA Length = 2030 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 1324 cctggcccaggcggtgctgggcggc 1348
>gb|AY069853.1| Drosophila melanogaster SD10289 full length cDNA Length = 1804 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 1084 cctggcccaggcggtgctgggcggc 1108
>gb|AC010842.5|AC010842 Drosophila melanogaster, chromosome 2R, region 59F5-59F8, BAC clone BACR02E09, complete sequence Length = 175118 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 51776 cctggcccaggcggtgctgggcggc 51800
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 cgtcccaaccgcggcgccggctccg 403 ||||||||||||| ||||||||||| Sbjct: 215497 cgtcccaaccgcgccgccggctccg 215521
>gb|AY957390.1| Pseudomonas stutzeri NosL (nosL), NosY (nosY), and NosF (nosF) genes, complete cds; NosD-like (nosD) gene, complete sequence; and NosZ (nosZ) and NosR (nosR) genes, complete cds Length = 8000 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 139 gctggtcctggccctggcggtgctg 163 |||| |||||||||||||||||||| Sbjct: 1112 gctgatcctggccctggcggtgctg 1088
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 146 ctggccctggcggtgctgggcggcg 170 ||||| ||||||||||||||||||| Sbjct: 100668 ctggcgctggcggtgctgggcggcg 100644
>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436E04 Length = 144644 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 cgtcccaaccgcggcgccggctccg 403 ||||||||||||| ||||||||||| Sbjct: 57167 cgtcccaaccgcgccgccggctccg 57191
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cctggccctggcggtgctgggcggc 169 |||||||| |||||||||||||||| Sbjct: 229374 cctggcccaggcggtgctgggcggc 229398
>ref|XM_362740.1| Magnaporthe grisea 70-15 hypothetical protein (MG08308.4) partial mRNA Length = 846 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 334 catcctcatcgcgctcctccccgtcttc 361 |||||||||||| |||||||| |||||| Sbjct: 321 catcctcatcgccctcctcccagtcttc 348
>gb|BC056418.1| Homo sapiens melanoma cell adhesion molecule, mRNA (cDNA clone MGC:65073 IMAGE:6195486), complete cds Length = 2706 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tcctggccctggcggtgctgggcg 167 |||||| ||||||||||||||||| Sbjct: 1725 tcctggtcctggcggtgctgggcg 1748
>gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04, complete sequence Length = 122599 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 ttcaccgccttcgccttcgtcgtc 382 ||||||| |||||||||||||||| Sbjct: 54887 ttcaccgtcttcgccttcgtcgtc 54910
>ref|NM_006500.2| Homo sapiens melanoma cell adhesion molecule (MCAM), mRNA Length = 3332 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tcctggccctggcggtgctgggcg 167 |||||| ||||||||||||||||| Sbjct: 1735 tcctggtcctggcggtgctgggcg 1758
>ref|XM_742885.1| Aspergillus fumigatus Af293 transcription initiation factor TFIID subunit beta (Afu5g03660) partial mRNA Length = 1551 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 333 tcatcctcatcgcgctcctccccg 356 ||||||||||||| |||||||||| Sbjct: 437 tcatcctcatcgccctcctccccg 414
>gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete sequence Length = 96063 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ttcatcctcatcgcgctcct 351 |||||||||||||||||||| Sbjct: 20145 ttcatcctcatcgcgctcct 20126
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 cgcggcgccggctccgtcgt 407 |||||||||||||||||||| Sbjct: 77157 cgcggcgccggctccgtcgt 77176
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 caacgggctgctgggcctgctgaa 129 ||||||||||||||||| |||||| Sbjct: 51142 caacgggctgctgggccggctgaa 51119
>emb|AL645988.6| Mouse DNA sequence from clone RP23-67J22 on chromosome 11 Contains four novel genes (9130409J20Rik, A530088H08Rik), two genes for a novel proteins (2310004I24Rik, A730055C05Rik, LOC193004), the Sco1 gene for SCO cytochrome oxidase deficient homolog 1 (yeast), the 5' end of the Myh3 gene for skeletal muscle embryonic myosin heavy polypeptide 3 and a CpG island, complete sequence Length = 217003 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 gcctcctgcctcctctggctctac 319 ||||||||||||||||| |||||| Sbjct: 144468 gcctcctgcctcctctgcctctac 144491
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gcggccggtcatcgcgctgg 242 |||||||||||||||||||| Sbjct: 1353842 gcggccggtcatcgcgctgg 1353823
>dbj|AK128335.1| Homo sapiens cDNA FLJ46477 fis, clone THYMU3025118, highly similar to Cell surface glycoprotein MUC18 precursor Length = 2898 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tcctggccctggcggtgctgggcg 167 |||||| ||||||||||||||||| Sbjct: 2006 tcctggtcctggcggtgctgggcg 2029
>dbj|AK126303.1| Homo sapiens cDNA FLJ44324 fis, clone TRACH3002168, highly similar to Cell surface glycoprotein MUC18 precursor Length = 3483 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tcctggccctggcggtgctgggcg 167 |||||| ||||||||||||||||| Sbjct: 2468 tcctggtcctggcggtgctgggcg 2491
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 agcggccggtcatcgcgctg 241 |||||||||||||||||||| Sbjct: 973733 agcggccggtcatcgcgctg 973714
>gb|AY129332.1| Mycobacteriophage Bxz2, complete genome Length = 50913 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 gactgcgagcggttcctgga 222 |||||||||||||||||||| Sbjct: 8500 gactgcgagcggttcctgga 8519
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 ccgcggcgccggctccgtcg 406 |||||||||||||||||||| Sbjct: 1648433 ccgcggcgccggctccgtcg 1648452
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 ttcaccgccttcgccttcgtcgtc 382 ||||||| |||||||||||||||| Sbjct: 24369097 ttcaccgtcttcgccttcgtcgtc 24369120
>gb|AY217775.1| Magnetospirillum magnetotacticum PhaZ1 (phaZ1) gene, complete cds Length = 2253 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 cggtgctgggcggcggaatc 175 |||||||||||||||||||| Sbjct: 1479 cggtgctgggcggcggaatc 1460
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 ctggcgctgtccctcgcggggctg 277 ||||||||||| |||||||||||| Sbjct: 521704 ctggcgctgtcactcgcggggctg 521727
>emb|AJ297452.1|HSA297452 Homo sapiens partial mRNA for melanoma adhesion molecule (MCAM gene), short cytoplasmic tail isoform Length = 141 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tcctggccctggcggtgctgggcg 167 |||||| ||||||||||||||||| Sbjct: 32 tcctggtcctggcggtgctgggcg 55
>gb|AY533546.1| Chelydra serpentina cytochrome P450c17 (CYP17) mRNA, complete cds Length = 3815 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 ctgggggcgctgctcctggcgctg 262 ||||| |||||||||||||||||| Sbjct: 44 ctgggcgcgctgctcctggcgctg 67
>gb|AF089868.1|AF089868 Homo sapiens cell surface glycoprotein P1H12 precursor, mRNA, complete cds Length = 3335 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tcctggccctggcggtgctgggcg 167 |||||| ||||||||||||||||| Sbjct: 1729 tcctggtcctggcggtgctgggcg 1752
>emb|X68268.1|HSMUC185 H.sapiens MUC18 gene exon 14 Length = 379 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tcctggccctggcggtgctgggcg 167 |||||| ||||||||||||||||| Sbjct: 242 tcctggtcctggcggtgctgggcg 265
>gb|AY898625.1| Acidovorax avenae subsp. citrulli lytic murein transglycosylase, SAM-dependent methyltransferase, HrcC, HrpD5, HrpB1, HrpB2, HrcJ, HrpB4, HrpF, HrcN, hypothetical protein, GALA, HrcT, HrcU, HrcV, HpaP, HrcQ, HrcR, HrcS, HpaA, HpaB, HrpG, HrpX, and chorismate mutase genes, complete cds; anthranilate para-aminobenzoate synthase component I gene, partial cds; and unknown genes Length = 36584 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 caaccgcggcgccggctccg 403 |||||||||||||||||||| Sbjct: 20319 caaccgcggcgccggctccg 20300
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 cctggcggtgctgggcggcg 170 |||||||||||||||||||| Sbjct: 3215881 cctggcggtgctgggcggcg 3215900
>gb|AF045549.1|AF045549 Streptomyces coelicolor putative DNA binding protein (bldD) gene, complete cds Length = 1351 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 caacgggctgctgggcctgctgaa 129 ||||||||||||||||| |||||| Sbjct: 1315 caacgggctgctgggccggctgaa 1292
>dbj|AP002956.1| Homo sapiens genomic DNA, chromosome 11q clone:R1105h09, complete sequence Length = 219574 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 tcctggccctggcggtgctgggcg 167 |||||| ||||||||||||||||| Sbjct: 180114 tcctggtcctggcggtgctgggcg 180091
>dbj|AB209925.1| Homo sapiens mRNA for Melanoma cell adhesion molecule variant protein Length = 2153 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tcctggccctggcggtgctgggcg 167 |||||| ||||||||||||||||| Sbjct: 1745 tcctggtcctggcggtgctgggcg 1768
>gb|AY740076.1| Ostreococcus tauri LHY-like protein gene, partial cds Length = 969 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 355 cgtcttcaccgccttcgccttcgtcgtc 382 |||||||||||||||| ||| ||||||| Sbjct: 102 cgtcttcaccgccttcccctccgtcgtc 75
>gb|U14012.1|XXU14012 Synthetic construct glucagon receptor gene, complete cds Length = 1488 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 ctgggggcgctgctcctggcgctg 262 ||||| |||||||||||||||||| Sbjct: 475 ctgggcgcgctgctcctggcgctg 498
>gb|M28882.1|HUMMUC18B Human MUC18 glycoprotein mRNA, complete cds Length = 3306 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tcctggccctggcggtgctgggcg 167 |||||| ||||||||||||||||| Sbjct: 1713 tcctggtcctggcggtgctgggcg 1736
>gb|M29277.1|HUMMUC18A Human isolate JuSo MUC18 glycoprotein mRNA (3' variant), complete cds Length = 2943 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tcctggccctggcggtgctgggcg 167 |||||| ||||||||||||||||| Sbjct: 1713 tcctggtcctggcggtgctgggcg 1736 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,798,482 Number of Sequences: 3902068 Number of extensions: 2798482 Number of successful extensions: 70907 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68955 Number of HSP's gapped (non-prelim): 1939 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
