ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast50a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SWC4_ASPFU (Q4WNY4) SWR1-complex protein 4 30 1.1
2MA2B2_HUMAN (Q9Y2E5) Epididymis-specific alpha-mannosidase precu... 28 7.0
3UVRC_CHLCH (Q3AQX4) UvrABC system protein C (Protein uvrC) (Exci... 28 7.0
4N4BP3_MOUSE (Q8C7U1) NEDD4-binding protein 3 (N4BP3) 28 7.0
5BUD23_YEAST (P25627) Putative methyltransferase BUD23 (EC 2.1.1.... 27 9.2

>SWC4_ASPFU (Q4WNY4) SWR1-complex protein 4|
          Length = 588

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -1

Query: 359 RLTSAAASPVDAEKATSLS*SRWCSLILSPTPRASSARKALVHVLNAYPDARSVADDSST 180
           +LT A ++    + AT+L+       +L PT R     + L+H +N   DAR V++   +
Sbjct: 430 KLTQAKSNVQSQKLATALAELEIPPRLLMPTERVCKEFEKLIHSVNLLLDARKVSEKIES 489

Query: 179 TLR 171
            +R
Sbjct: 490 EIR 492



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>MA2B2_HUMAN (Q9Y2E5) Epididymis-specific alpha-mannosidase precursor (EC|
           3.2.1.24) (Mannosidase alpha class 2B member 2)
          Length = 1009

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 223 FNTWTNAFRALDALGVGDKIREHH-LLYERLVAFSASTGEAAAEVSLK 363
           + T  + FRAL AL V  ++R+HH  L      F A TG   +  SLK
Sbjct: 322 YATLGDYFRALHALNVTWRVRDHHDFLPYSTEPFQAWTGFYTSRSSLK 369



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>UVRC_CHLCH (Q3AQX4) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 629

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 256 DALGVGDKIREHHLLYERLVAFSASTGEAAAEVSLKM 366
           DA GV  KIRE  LL  + +  + + GE+ A + L+M
Sbjct: 279 DACGVIFKIREGKLLGSQRIYINNTNGESEASMQLRM 315



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>N4BP3_MOUSE (Q8C7U1) NEDD4-binding protein 3 (N4BP3)|
          Length = 537

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 290 CSLILSPTPRASSARKALVHVLN 222
           C   LSP PRAS AR  L+H L+
Sbjct: 150 CHPPLSPGPRASQARAQLLHALS 172



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>BUD23_YEAST (P25627) Putative methyltransferase BUD23 (EC 2.1.1.-) (Bud site|
           selection protein 23)
          Length = 275

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 377 LMPCIFRLTSAAASPVDAEKATSLS*SRWCSLILSPTPRASSARKAL 237
           L PC F L     S +  E  T      WC L +SP+  A+   + L
Sbjct: 45  LQPCSFILDIGCGSGLSGEILTQEGDHVWCGLDISPSMLATGLSREL 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,323,674
Number of Sequences: 219361
Number of extensions: 592514
Number of successful extensions: 1636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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