ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast50a04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A09, full insert sequence Length = 1661 Score = 301 bits (152), Expect = 9e-79 Identities = 245/276 (88%) Strand = Plus / Plus Query: 93 gggcgtcgaggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggg 152 ||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| || || Sbjct: 114 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 173 Query: 153 gttgcacaggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtc 212 ||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct: 174 gttacacaggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtc 233 Query: 213 ggggtacgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgtcgg 272 |||| |||||||| |||||||| |||||||||||||||||||| ||||| || ||||| Sbjct: 234 cgggttcgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcgg 293 Query: 273 ggacaagatcagggagcaccacctgctctacgagaggctggtggccttctctgcatccac 332 ||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| Sbjct: 294 cgacaagatcagggagcatcatctgctctacgagaggctgttggccttctctgcatccac 353 Query: 333 aggcgaggctgccgcggaagtgagcctaaagatgca 368 || ||| |||||||| | |||| ||||||||||| Sbjct: 354 gggagagcctgccgcgaagttgagtctaaagatgca 389
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 188 bits (95), Expect = 9e-45 Identities = 137/151 (90%) Strand = Plus / Plus Query: 159 caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 218 |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| Sbjct: 2946684 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 2946743 Query: 219 cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaa 278 |||||||| |||||||| |||||||||||||||||||| ||||| || ||||| ||||| Sbjct: 2946744 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 2946803 Query: 279 gatcagggagcaccacctgctctacgagagg 309 |||||||||||| || ||||||||||||||| Sbjct: 2946804 gatcagggagcatcatctgctctacgagagg 2946834 Score = 121 bits (61), Expect = 2e-24 Identities = 97/109 (88%) Strand = Plus / Plus Query: 173 ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 232 ||||||||||||||||||||||| ||||||||||| |||| |||| ||||||| ||||| Sbjct: 2943674 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943733 Query: 233 ggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaagat 281 |||| ||||||||||||||||| |||||||| || || || |||||||| Sbjct: 2943734 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 2943782 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 93 gggcgtcgaggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggg 152 ||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| || || Sbjct: 2946505 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 2946564 Query: 153 gttgcacagg 162 ||| |||||| Sbjct: 2946565 gttacacagg 2946574 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 102 ggagatcgtcatcgccggcgccgggctcgccggactcgc 140 |||||||||||||||||||||||| |||||||| ||||| Sbjct: 2943520 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 2943558 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 307 aggctggtggccttctctgcatccacaggcgaggctgccgcggaagtgagcctaaagatg 366 |||||| ||||||||||||||||||| || ||| |||||||| | |||| ||||||||| Sbjct: 2947307 aggctgttggccttctctgcatccacgggagagcctgccgcgaagttgagtctaaagatg 2947366 Query: 367 ca 368 || Sbjct: 2947367 ca 2947368 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Plus Query: 307 aggctggtggccttctctgcatccac 332 |||||||||||||||||||||||||| Sbjct: 2975690 aggctggtggccttctctgcatccac 2975715 Score = 44.1 bits (22), Expect = 0.32 Identities = 34/38 (89%) Strand = Plus / Plus Query: 180 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 217 |||||||||||||||| || ||| ||||||||||||| Sbjct: 2940419 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2940456 Score = 44.1 bits (22), Expect = 0.32 Identities = 34/38 (89%) Strand = Plus / Plus Query: 180 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 217 |||||||||||||||| || ||| ||||||||||||| Sbjct: 2916789 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2916826
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 188 bits (95), Expect = 9e-45 Identities = 137/151 (90%) Strand = Plus / Plus Query: 159 caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 218 |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| Sbjct: 84171 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 84230 Query: 219 cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaa 278 |||||||| |||||||| |||||||||||||||||||| ||||| || ||||| ||||| Sbjct: 84231 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 84290 Query: 279 gatcagggagcaccacctgctctacgagagg 309 |||||||||||| || ||||||||||||||| Sbjct: 84291 gatcagggagcatcatctgctctacgagagg 84321 Score = 121 bits (61), Expect = 2e-24 Identities = 97/109 (88%) Strand = Plus / Plus Query: 173 ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 232 ||||||||||||||||||||||| ||||||||||| |||| |||| ||||||| ||||| Sbjct: 81161 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 81220 Query: 233 ggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaagat 281 |||| ||||||||||||||||| |||||||| || || || |||||||| Sbjct: 81221 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 81269 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 93 gggcgtcgaggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggg 152 ||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| || || Sbjct: 83992 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 84051 Query: 153 gttgcacagg 162 ||| |||||| Sbjct: 84052 gttacacagg 84061 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 102 ggagatcgtcatcgccggcgccgggctcgccggactcgc 140 |||||||||||||||||||||||| |||||||| ||||| Sbjct: 81007 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 81045 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 307 aggctggtggccttctctgcatccacaggcgaggctgccgcggaagtgagcctaaagatg 366 |||||| ||||||||||||||||||| || ||| |||||||| | |||| ||||||||| Sbjct: 84794 aggctgttggccttctctgcatccacgggagagcctgccgcgaagttgagtctaaagatg 84853 Query: 367 ca 368 || Sbjct: 84854 ca 84855 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Plus Query: 307 aggctggtggccttctctgcatccac 332 |||||||||||||||||||||||||| Sbjct: 113177 aggctggtggccttctctgcatccac 113202 Score = 44.1 bits (22), Expect = 0.32 Identities = 34/38 (89%) Strand = Plus / Plus Query: 180 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 217 |||||||||||||||| || ||| ||||||||||||| Sbjct: 77906 ggtgctggagtcgtcgccggagctccgggcgtcggggt 77943 Score = 44.1 bits (22), Expect = 0.32 Identities = 34/38 (89%) Strand = Plus / Plus Query: 180 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 217 |||||||||||||||| || ||| ||||||||||||| Sbjct: 54276 ggtgctggagtcgtcgccggagctccgggcgtcggggt 54313
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 188 bits (95), Expect = 9e-45 Identities = 137/151 (90%) Strand = Plus / Plus Query: 159 caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 218 |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| Sbjct: 2946795 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 2946854 Query: 219 cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaa 278 |||||||| |||||||| |||||||||||||||||||| ||||| || ||||| ||||| Sbjct: 2946855 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 2946914 Query: 279 gatcagggagcaccacctgctctacgagagg 309 |||||||||||| || ||||||||||||||| Sbjct: 2946915 gatcagggagcatcatctgctctacgagagg 2946945 Score = 121 bits (61), Expect = 2e-24 Identities = 97/109 (88%) Strand = Plus / Plus Query: 173 ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 232 ||||||||||||||||||||||| ||||||||||| |||| |||| ||||||| ||||| Sbjct: 2943785 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943844 Query: 233 ggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaagat 281 |||| ||||||||||||||||| |||||||| || || || |||||||| Sbjct: 2943845 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 2943893 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 93 gggcgtcgaggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggg 152 ||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| || || Sbjct: 2946616 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 2946675 Query: 153 gttgcacagg 162 ||| |||||| Sbjct: 2946676 gttacacagg 2946685 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 102 ggagatcgtcatcgccggcgccgggctcgccggactcgc 140 |||||||||||||||||||||||| |||||||| ||||| Sbjct: 2943631 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 2943669 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 307 aggctggtggccttctctgcatccacaggcgaggctgccgcggaagtgagcctaaagatg 366 |||||| ||||||||||||||||||| || ||| |||||||| | |||| ||||||||| Sbjct: 2947418 aggctgttggccttctctgcatccacgggagagcctgccgcgaagttgagtctaaagatg 2947477 Query: 367 ca 368 || Sbjct: 2947478 ca 2947479 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Plus Query: 307 aggctggtggccttctctgcatccac 332 |||||||||||||||||||||||||| Sbjct: 2975801 aggctggtggccttctctgcatccac 2975826 Score = 44.1 bits (22), Expect = 0.32 Identities = 34/38 (89%) Strand = Plus / Plus Query: 180 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 217 |||||||||||||||| || ||| ||||||||||||| Sbjct: 2940530 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2940567 Score = 44.1 bits (22), Expect = 0.32 Identities = 34/38 (89%) Strand = Plus / Plus Query: 180 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 217 |||||||||||||||| || ||| ||||||||||||| Sbjct: 2916900 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2916937
>dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118I15, full insert sequence Length = 1518 Score = 167 bits (84), Expect = 3e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 102 ggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggggttgcacag 161 |||||||||||||||||||||||| |||||||| ||||| |||||| || ||||||| Sbjct: 100 ggagatcgtcatcgccggcgccggcctcgccgggctcgcagtggccctcggactgcacag 159 Query: 162 gaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgc 221 |||||| | ||||||||||||||||||||||| ||||||||||| |||| |||| || Sbjct: 160 gaaaggactgaggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggc 219 Query: 222 gttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgtcggggacaagat 281 ||||| ||||||||| ||||||||||||||||| |||||||| || || || |||||||| Sbjct: 220 gttcatcacatggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 279
>dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B02, full insert sequence Length = 1590 Score = 56.0 bits (28), Expect = 8e-05 Identities = 82/100 (82%) Strand = Plus / Plus Query: 118 ggcgccgggctcgccggactcgccacggccctggggttgcacaggaaaggggttcggagc 177 ||||||||| ||||||| |||||| ||| || ||| |||||||||||||||| | || Sbjct: 277 ggcgccgggatcgccggcctcgccgtggctctcgggctgcacaggaaaggggtgaagtgc 336 Query: 178 gtggtgctggagtcgtcggcgacgctgcgggcgtcggggt 217 ||||||| |||||||| || ||| ||||||||||||| Sbjct: 337 tcggtgctgaagtcgtcgccggagctccgggcgtcggggt 376
>gb|AE004755.1| Pseudomonas aeruginosa PAO1, section 316 of 529 of the complete genome Length = 14759 Score = 48.1 bits (24), Expect = 0.021 Identities = 39/44 (88%) Strand = Plus / Plus Query: 104 agatcgtcatcgccggcgccgggctcgccggactcgccacggcc 147 |||||||||||||||||||||| ||| ||| |||||| ||||| Sbjct: 8363 agatcgtcatcgccggcgccggcatcggcgggctcgccgcggcc 8406
>ref|XM_515380.1| PREDICTED: Pan troglodytes LOC459125 (LOC459125), mRNA Length = 4679 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 305 agaggctggtggccttctctgc 326 |||||||||||||||||||||| Sbjct: 2851 agaggctggtggccttctctgc 2830
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09, complete sequence Length = 96079 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 118 ggcgccgggctcgccggactcgccacggccctgg 151 ||||||||| ||||||| ||||||||||| |||| Sbjct: 36294 ggcgccgggatcgccgggctcgccacggcgctgg 36327
>ref|NM_001029883.1| Homo sapiens similar to cDNA sequence BC027072 (FLJ34931), mRNA Length = 7044 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 305 agaggctggtggccttctctgc 326 |||||||||||||||||||||| Sbjct: 2851 agaggctggtggccttctctgc 2830
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 105 gatcgtcatcgccggcgccggg 126 |||||||||||||||||||||| Sbjct: 2671427 gatcgtcatcgccggcgccggg 2671406
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 118 ggcgccgggctcgccggactcgccacggccctgg 151 ||||||||| ||||||| ||||||||||| |||| Sbjct: 20933071 ggcgccgggatcgccgggctcgccacggcgctgg 20933104
>gb|AC105398.3| Homo sapiens BAC clone RP11-656O12 from 2, complete sequence Length = 170262 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 agaggctggtggccttctctgc 326 |||||||||||||||||||||| Sbjct: 108271 agaggctggtggccttctctgc 108292
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 114 cgccggcgccgggctcgccgga 135 |||||||||||||||||||||| Sbjct: 1162663 cgccggcgccgggctcgccgga 1162642
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16 Length = 349640 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 cggcgccgggctcgccggact 137 ||||||||||||||||||||| Sbjct: 294822 cggcgccgggctcgccggact 294842
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 tcgccggcgccgggctcgccg 133 ||||||||||||||||||||| Sbjct: 57160 tcgccggcgccgggctcgccg 57180
>gb|AC105081.4| Homo sapiens chromosome 8, clone CTC-788C1, complete sequence Length = 158605 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 aggctggtggccttctctgca 327 ||||||||||||||||||||| Sbjct: 96141 aggctggtggccttctctgca 96161
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 gtcggcgacgctgcgggcgtcgggg 216 |||||||| |||||||||||||||| Sbjct: 7304928 gtcggcgaagctgcgggcgtcgggg 7304904
>dbj|AP003351.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1184D12 Length = 176854 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 aggctggtggccttctctgca 327 ||||||||||||||||||||| Sbjct: 18593 aggctggtggccttctctgca 18573
>ref|XM_476770.1| Oryza sativa (japonica cultivar-group), mRNA Length = 657 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 101 aggagatcgtcatcgccggcgccg 124 |||||||||||||||||| ||||| Sbjct: 41 aggagatcgtcatcgccgtcgccg 64
>gb|AC149084.5| Mus musculus BAC clone RP23-173A12 from chromosome 19, complete sequence Length = 188848 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 tgcggtggatggagggcgtcgaggagat 107 ||||||||| |||||| ||||||||||| Sbjct: 74081 tgcggtggagggagggagtcgaggagat 74108
>gb|AC145549.3| Mus musculus BAC clone RP23-21M23 from chromosome 19, complete sequence Length = 247655 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 tgcggtggatggagggcgtcgaggagat 107 ||||||||| |||||| ||||||||||| Sbjct: 132864 tgcggtggagggagggagtcgaggagat 132891
>gb|AC132957.3| Mus musculus BAC clone RP23-149E9 from chromosome 19, complete sequence Length = 246177 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 tgcggtggatggagggcgtcgaggagat 107 ||||||||| |||||| ||||||||||| Sbjct: 193068 tgcggtggagggagggagtcgaggagat 193095
>emb|Z92967.1|CEF14D1 Caenorhabditis elegans Cosmid F14D1, complete sequence Length = 32703 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 ggcgtcgaggagatcgtcatcgcc 117 |||| ||||||||||||||||||| Sbjct: 11221 ggcgacgaggagatcgtcatcgcc 11198
>emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, complete sequence Length = 174698 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 ttcaccactctgctatttctttcc 59 |||||||||||||| ||||||||| Sbjct: 36172 ttcaccactctgctctttctttcc 36195
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 236 ccaacgccttccgcgcgctcgatgccctcggcgtcggggacaag 279 |||||||||||| |||| |||| || || |||||||| |||||| Sbjct: 808987 ccaacgccttccacgcgttcgacgcgctgggcgtcggcgacaag 809030
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgcgcgctcgatgccctcggcgtc 270 |||||||||||||||| ||||||| Sbjct: 296650 cgcgcgctcgatgcccgcggcgtc 296627
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cgcgcgctcgatgccctcggcgtc 270 |||||||||||||||| ||||||| Sbjct: 208128 cgcgcgctcgatgcccgcggcgtc 208105
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 cgcgcgctcgatgccctcggcgtc 270 |||||||||||||||| ||||||| Sbjct: 190370 cgcgcgctcgatgcccgcggcgtc 190393
>gb|DQ397556.1| Cenarchaeum symbiosum clone C13A10, complete sequence Length = 40870 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 acaggcgaggctgccgcgga 350 |||||||||||||||||||| Sbjct: 14235 acaggcgaggctgccgcgga 14254
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 catcgccggcgccgggctcg 130 |||||||||||||||||||| Sbjct: 3854543 catcgccggcgccgggctcg 3854524 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 tcatcgccggcgccgggctcgccg 133 ||||||||||||||| |||||||| Sbjct: 671675 tcatcgccggcgccgcgctcgccg 671652
>gb|AE012435.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 343 of 460 of the complete genome Length = 11282 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 cgtcatcgccggcgccgggctcgc 131 |||||||||| ||||||||||||| Sbjct: 4327 cgtcatcgcctgcgccgggctcgc 4350
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 tcgccggcgccgggctcgccggac 136 |||||||||||||||||| ||||| Sbjct: 1680633 tcgccggcgccgggctcggcggac 1680610
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 tcgtcatcgccggcgccggg 126 |||||||||||||||||||| Sbjct: 774062 tcgtcatcgccggcgccggg 774043
>dbj|AB207867.1| Escherichia coli transposon Tn2610, complete sequence Length = 23883 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gagaggctggtggccttctc 323 |||||||||||||||||||| Sbjct: 8926 gagaggctggtggccttctc 8907
>gb|AF261825.2| Salmonella enterica subsp. enterica serovar Typhimurium genomic island I, complete sequence Length = 47723 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gagaggctggtggccttctc 323 |||||||||||||||||||| Sbjct: 35977 gagaggctggtggccttctc 35958
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 gctcgatgccctcggcgtcg 271 |||||||||||||||||||| Sbjct: 3350422 gctcgatgccctcggcgtcg 3350441
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cgctcgatgccctcggcgtc 270 |||||||||||||||||||| Sbjct: 3057535 cgctcgatgccctcggcgtc 3057554
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 cgtcatcgccggcgccgggctcgc 131 |||||||||| ||||||||||||| Sbjct: 1177986 cgtcatcgcctgcgccgggctcgc 1177963
>gb|AF386507.1|AF386507 Streptomyces lavendulae complestatin biosynthetic gene cluster, complete sequence Length = 55972 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tcgccggcgccgggctcgcc 132 |||||||||||||||||||| Sbjct: 14370 tcgccggcgccgggctcgcc 14389
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 tcgaggagatcgtcatcgccggcg 121 |||| ||||||||||||||||||| Sbjct: 4999118 tcgacgagatcgtcatcgccggcg 4999095 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 catcgccggcgccgggctcg 130 |||||||||||||||||||| Sbjct: 2628540 catcgccggcgccgggctcg 2628559
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 cggcgccgggctcgccggactcgc 140 ||||||||||||||||| |||||| Sbjct: 1071283 cggcgccgggctcgccgaactcgc 1071260
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 aggagatcgtcatcgccggcgccg 124 |||||||||||||||||| ||||| Sbjct: 3826276 aggagatcgtcatcgccgtcgccg 3826253
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cgtcgaggagatcgtcatcg 115 |||||||||||||||||||| Sbjct: 992638 cgtcgaggagatcgtcatcg 992619
>gb|AC073218.6| Homo sapiens BAC clone RP11-529E15 from 2, complete sequence Length = 150263 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 aaggggttcggagcgtggtgctgg 187 |||||||| ||||||||||||||| Sbjct: 94399 aaggggtttggagcgtggtgctgg 94376
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 cggcgccgggctcgccggactcgc 140 |||||||| ||||||||||||||| Sbjct: 8959676 cggcgccgtgctcgccggactcgc 8959653 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 cgtcatcgccggcgccgggctcgc 131 |||| ||||||||||||||||||| Sbjct: 4438572 cgtcctcgccggcgccgggctcgc 4438549
>gb|AF240624.1|AF240624 Homo sapiens clone 11qtel_2072draft_c sequence Length = 12583 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 gaggctggtggccttctctg 325 |||||||||||||||||||| Sbjct: 5502 gaggctggtggccttctctg 5521
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 aggagatcgtcatcgccggcgccg 124 |||||||||||||||||| ||||| Sbjct: 65388 aggagatcgtcatcgccgtcgccg 65365
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cgccggcgccgggctcgccg 133 |||||||||||||||||||| Sbjct: 535267 cgccggcgccgggctcgccg 535286
>dbj|AB103506.1| Serratia marcescens tnpR, blaTEM, rmtB, orfA genes for resolvase, beta-lactamase TEM-1, 16S rRNA methylase, hypothetical protein, partial and complete cds Length = 4566 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gagaggctggtggccttctc 323 |||||||||||||||||||| Sbjct: 3710 gagaggctggtggccttctc 3729
>emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Multi-Drug Resistance in Acinetobacter baumannii Length = 100001 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gagaggctggtggccttctc 323 |||||||||||||||||||| Sbjct: 38555 gagaggctggtggccttctc 38536 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gagaggctggtggccttctc 323 |||||||||||||||||||| Sbjct: 33442 gagaggctggtggccttctc 33423
>gb|AF071555.1|AF071555 Salmonella typhimurium DT104 antibiotic resistance gene cluster, complete sequence Length = 13077 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 gagaggctggtggccttctc 323 |||||||||||||||||||| Sbjct: 9939 gagaggctggtggccttctc 9920
>emb|X14716.1|ACNIFA2 Azorhizobium caulinodans nifA gene for nitrogen fixation regulatory protein Length = 2641 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cgccggcgccgggctcgccg 133 |||||||||||||||||||| Sbjct: 1887 cgccggcgccgggctcgccg 1868
>emb|X08014.1|ACNIFA Azorhizobium caulinodans nifA gene Length = 2809 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cgccggcgccgggctcgccg 133 |||||||||||||||||||| Sbjct: 2294 cgccggcgccgggctcgccg 2275
>dbj|AP003039.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-116B3, complete sequence Length = 152252 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 gaggctggtggccttctctg 325 |||||||||||||||||||| Sbjct: 110442 gaggctggtggccttctctg 110461
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cgctcgatgccctcggcgtc 270 |||||||||||||||||||| Sbjct: 4794443 cgctcgatgccctcggcgtc 4794462
>gb|AC170878.4| Mus musculus BAC clone RP24-226F17 from chromosome 19, complete sequence Length = 148454 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 tgcggtggatggagggcgtcgaggagat 107 ||||||||| |||||| ||||||||||| Sbjct: 11854 tgcggtggagggagggagtcgaggagat 11881
>emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on chromosome 2, complete sequence Length = 196078 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 cagggagcaccacctgctct 301 |||||||||||||||||||| Sbjct: 64851 cagggagcaccacctgctct 64832 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,434,681 Number of Sequences: 3902068 Number of extensions: 2434681 Number of successful extensions: 51167 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48797 Number of HSP's gapped (non-prelim): 2369 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
