| Clone Name | bast50a02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073262.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026H23, full insert sequence Length = 1655 Score = 476 bits (240), Expect = e-131 Identities = 369/412 (89%) Strand = Plus / Plus Query: 5 cagcccggagtcggtggggagttacgttgaggttcacttggaacaagggcctgtcctgga 64 |||||||||||| || |||||||| || ||||||||| | |||||||||||||||||||| Sbjct: 727 cagcccggagtctgtcgggagttatgtcgaggttcacattgaacaagggcctgtcctgga 786 Query: 65 agccttccgttatccccttggcgtcgtaaatggaatcgcagggcagacgcgattgaaggt 124 |||| | |||||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||| Sbjct: 787 agcccttcgttatccgcttggtgttgtaaaaggaattgcaggacagacgcgattaaaggt 846 Query: 125 aatagtagacggttcccaagggcatgctgggacggttccaatgaaattgcgccgtgatcc 184 ||| || | ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 847 aattataaatggttcacaagggcatgctggcacggttccaatgaaattgcgccgtgatcc 906 Query: 185 gatggttgcagctgcagagctggtggtgacactggagagcctgtgcaaagagccgagcag 244 ||||||||||||||||||||| || |||||||||||| || |||||||| || | || Sbjct: 907 gatggttgcagctgcagagctcgtcctgacactggagacgctctgcaaagaacccaacaa 966 Query: 245 gttcctgacctacgacgaggactgcggctgcttcaccgaggagtccctcgccggcctcgt 304 |||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| Sbjct: 967 gttcctcacctacgacgaggaatgcggctgcttcactgaggaatccctcgccggactcgt 1026 Query: 305 ctgcaccgtcggcgagctgctcacctggcccagcgtcagcaacgtcattccaggccaggt 364 |||||||||||||||||| || || |||||||||| |||||||||||| ||||||||||| Sbjct: 1027 ctgcaccgtcggcgagctcctgacatggcccagcgccagcaacgtcataccaggccaggt 1086 Query: 365 gaacttcacggtggacatacgcgccatggacgaccaggtgcgggagacgatc 416 |||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 1087 gaacttcacggtggacatacgcgccatggacgacaaggtgagggagacgatc 1138
>gb|AY104710.1| Zea mays PCO117022 mRNA sequence Length = 1699 Score = 414 bits (209), Expect = e-113 Identities = 359/409 (87%) Strand = Plus / Plus Query: 8 cccggagtcggtggggagttacgttgaggttcacttggaacaagggcctgtcctggaagc 67 ||||||||| ||||||||||| |||||||| ||| |||| ||||| |||||||||||||| Sbjct: 745 cccggagtctgtggggagttatgttgaggtacacatggagcaaggccctgtcctggaagc 804 Query: 68 cttccgttatccccttggcgtcgtaaatggaatcgcagggcagacgcgattgaaggtaat 127 | | | |||||| ||||| || ||||| ||||| ||||| ||||| |||||||||||||| Sbjct: 805 ccttcattatccacttggtgttgtaaaaggaattgcaggacagacacgattgaaggtaat 864 Query: 128 agtagacggttcccaagggcatgctgggacggttccaatgaaattgcgccgtgatccgat 187 |||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 865 agtagatggttcgcaagggcatgctggcacagttccaatgaaattgcgccgtgatccgat 924 Query: 188 ggttgcagctgcagagctggtggtgacactggagagcctgtgcaaagagccgagcaggtt 247 |||||||||||||||||| || ||||| ||||| |||| || |||||||| | ||| || Sbjct: 925 ggttgcagctgcagagctcgttgtgactctggaacgcctctgtaaagagcccaacagttt 984 Query: 248 cctgacctacgacgaggactgcggctgcttcaccgaggagtccctcgccggcctcgtctg 307 ||||||||||||||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct: 985 gctgacctacgacgaggagtgcagctgcttcactgaggagtccctggccggcctggtgtg 1044 Query: 308 caccgtcggcgagctgctcacctggcccagcgtcagcaacgtcattccaggccaggtgaa 367 |||||||||||||||| ||| ||||| |||| |||||||| ||||| |||||||| || Sbjct: 1045 caccgtcggcgagctgaacacgtggccaagcgcgagcaacgtgattccgggccaggtaaa 1104 Query: 368 cttcacggtggacatacgcgccatggacgaccaggtgcgggagacgatc 416 ||||||||||||||| ||||| ||||||||||| ||| ||||||||||| Sbjct: 1105 cttcacggtggacatccgcgcgatggacgaccaagtgagggagacgatc 1153
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 281 bits (142), Expect = 9e-73 Identities = 208/230 (90%) Strand = Plus / Minus Query: 135 ggttcccaagggcatgctgggacggttccaatgaaattgcgccgtgatccgatggttgca 194 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 27112661 ggttcacaagggcatgctggcacggttccaatgaaattgcgccgtgatccgatggttgca 27112602 Query: 195 gctgcagagctggtggtgacactggagagcctgtgcaaagagccgagcaggttcctgacc 254 ||||||||||| || |||||||||||| || |||||||| || | || |||||| ||| Sbjct: 27112601 gctgcagagctcgtcctgacactggagacgctctgcaaagaacccaacaagttcctcacc 27112542 Query: 255 tacgacgaggactgcggctgcttcaccgaggagtccctcgccggcctcgtctgcaccgtc 314 ||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 27112541 tacgacgaggaatgcggctgcttcactgaggaatccctcgccggactcgtctgcaccgtc 27112482 Query: 315 ggcgagctgctcacctggcccagcgtcagcaacgtcattccaggccaggt 364 |||||||| || || |||||||||| |||||||||||| ||||||||||| Sbjct: 27112481 ggcgagctcctgacatggcccagcgccagcaacgtcataccaggccaggt 27112432 Score = 97.6 bits (49), Expect = 3e-17 Identities = 55/57 (96%) Strand = Plus / Minus Query: 360 caggtgaacttcacggtggacatacgcgccatggacgaccaggtgcgggagacgatc 416 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 27112333 caggtgaacttcacggtggacatacgcgccatggacgacaaggtgagggagacgatc 27112277 Score = 93.7 bits (47), Expect = 4e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 34 aggttcacttggaacaagggcctgtcctggaagccttccgttatccccttggcgtcgtaa 93 |||||||| | |||||||||||||||||||||||| | |||||||| ||||| || |||| Sbjct: 27113431 aggttcacattgaacaagggcctgtcctggaagcccttcgttatccgcttggtgttgtaa 27113372 Query: 94 atggaatcgcagggcagacgcgattgaaggt 124 | ||||| ||||| ||||||||||| ||||| Sbjct: 27113371 aaggaattgcaggacagacgcgattaaaggt 27113341 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 cgtcggcgagctgctcacct 330 |||||||||||||||||||| Sbjct: 29310285 cgtcggcgagctgctcacct 29310304
>dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0473H04 Length = 155204 Score = 281 bits (142), Expect = 9e-73 Identities = 208/230 (90%) Strand = Plus / Minus Query: 135 ggttcccaagggcatgctgggacggttccaatgaaattgcgccgtgatccgatggttgca 194 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 81471 ggttcacaagggcatgctggcacggttccaatgaaattgcgccgtgatccgatggttgca 81412 Query: 195 gctgcagagctggtggtgacactggagagcctgtgcaaagagccgagcaggttcctgacc 254 ||||||||||| || |||||||||||| || |||||||| || | || |||||| ||| Sbjct: 81411 gctgcagagctcgtcctgacactggagacgctctgcaaagaacccaacaagttcctcacc 81352 Query: 255 tacgacgaggactgcggctgcttcaccgaggagtccctcgccggcctcgtctgcaccgtc 314 ||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 81351 tacgacgaggaatgcggctgcttcactgaggaatccctcgccggactcgtctgcaccgtc 81292 Query: 315 ggcgagctgctcacctggcccagcgtcagcaacgtcattccaggccaggt 364 |||||||| || || |||||||||| |||||||||||| ||||||||||| Sbjct: 81291 ggcgagctcctgacatggcccagcgccagcaacgtcataccaggccaggt 81242 Score = 97.6 bits (49), Expect = 3e-17 Identities = 55/57 (96%) Strand = Plus / Minus Query: 360 caggtgaacttcacggtggacatacgcgccatggacgaccaggtgcgggagacgatc 416 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 81143 caggtgaacttcacggtggacatacgcgccatggacgacaaggtgagggagacgatc 81087 Score = 93.7 bits (47), Expect = 4e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 34 aggttcacttggaacaagggcctgtcctggaagccttccgttatccccttggcgtcgtaa 93 |||||||| | |||||||||||||||||||||||| | |||||||| ||||| || |||| Sbjct: 82241 aggttcacattgaacaagggcctgtcctggaagcccttcgttatccgcttggtgttgtaa 82182 Query: 94 atggaatcgcagggcagacgcgattgaaggt 124 | ||||| ||||| ||||||||||| ||||| Sbjct: 82181 aaggaattgcaggacagacgcgattaaaggt 82151
>ref|XM_515771.1| PREDICTED: Pan troglodytes similar to contactin associated protein-like 5 isoform 1 (LOC459588), mRNA Length = 4110 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 360 caggtgaacttcacggtggaca 381 |||||||||||||||||||||| Sbjct: 1243 caggtgaacttcacggtggaca 1264
>ref|XM_877835.1| PREDICTED: Bos taurus hypothetical protein LOC614600 (LOC614600), mRNA Length = 1076 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 324 ctcacctggcccagcgtcagca 345 |||||||||||||||||||||| Sbjct: 202 ctcacctggcccagcgtcagca 181
>ref|NM_130773.2| Homo sapiens contactin associated protein-like 5 (CNTNAP5), transcript variant 1, mRNA Length = 5284 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 360 caggtgaacttcacggtggaca 381 |||||||||||||||||||||| Sbjct: 1202 caggtgaacttcacggtggaca 1223
>ref|NM_138996.1| Homo sapiens contactin associated protein-like 5 (CNTNAP5), transcript variant 2, mRNA Length = 3310 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 360 caggtgaacttcacggtggaca 381 |||||||||||||||||||||| Sbjct: 1202 caggtgaacttcacggtggaca 1223
>dbj|AK056528.1| Homo sapiens cDNA FLJ31966 fis, clone NT2RP7007925, weakly similar to Homo sapiens contactin associated protein (Caspr) mRNA Length = 3313 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 360 caggtgaacttcacggtggaca 381 |||||||||||||||||||||| Sbjct: 1202 caggtgaacttcacggtggaca 1223
>gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete sequence Length = 112084 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 360 caggtgaacttcacggtggaca 381 |||||||||||||||||||||| Sbjct: 73927 caggtgaacttcacggtggaca 73948
>emb|AL672182.18| Mouse DNA sequence from clone RP23-293I3 on chromosome 11, complete sequence Length = 211363 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 caagggcctgtcctggaagcct 69 |||||||||||||||||||||| Sbjct: 3214 caagggcctgtcctggaagcct 3235
>dbj|AB077881.1| Homo sapiens mRNA for caspr5, complete cds Length = 4920 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 360 caggtgaacttcacggtggaca 381 |||||||||||||||||||||| Sbjct: 838 caggtgaacttcacggtggaca 859
>emb|AL096772.5|HSJ365O12 Human DNA sequence from clone RP3-365O12 on chromosome 6p11.2-12.3 Contains the gene for a novel protein similar to KIAA0758 and two novel genes, complete sequence Length = 117636 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 cagctgcagagctggtggtga 213 ||||||||||||||||||||| Sbjct: 59111 cagctgcagagctggtggtga 59131
>dbj|AB065679.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_242 Length = 109156 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 cagctgcagagctggtggtga 213 ||||||||||||||||||||| Sbjct: 108967 cagctgcagagctggtggtga 108987
>gb|AC124176.3| Mus musculus BAC clone RP23-184D18 from 7, complete sequence Length = 180922 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggaacaagggcctgtcctgg 63 |||||||||||||||||||| Sbjct: 133175 ggaacaagggcctgtcctgg 133156
>emb|AL161509.2|ATCHRIV21 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 21 Length = 195837 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 ttgcagctgcagagctggtg 209 |||||||||||||||||||| Sbjct: 102890 ttgcagctgcagagctggtg 102871
>gb|AC152505.2| Pan troglodytes BAC clone RP43-113N22 from chromosome 7, complete sequence Length = 219580 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 agacggttcccaagggcatg 150 |||||||||||||||||||| Sbjct: 133784 agacggttcccaagggcatg 133803
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 cgtcggcgagctgctcacct 330 |||||||||||||||||||| Sbjct: 21166 cgtcggcgagctgctcacct 21185
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 cgtcggcgagctgctcacct 330 |||||||||||||||||||| Sbjct: 73083 cgtcggcgagctgctcacct 73102
>dbj|AK119527.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B05, full insert sequence Length = 1762 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 cgtcggcgagctgctcacct 330 |||||||||||||||||||| Sbjct: 1450 cgtcggcgagctgctcacct 1469
>gb|AF160183.1|T17A2 Arabidopsis thaliana BAC T17A2 Length = 81902 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 ttgcagctgcagagctggtg 209 |||||||||||||||||||| Sbjct: 59608 ttgcagctgcagagctggtg 59589
>gb|AF062636.1|AF062636 Gallus gallus collagen type XII alpha-1 (COL12A1) gene, promoter region and partial cds Length = 5715 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gagctgctcacctggcccag 337 |||||||||||||||||||| Sbjct: 4527 gagctgctcacctggcccag 4546
>gb|AC090940.2| Homo sapiens chromosome 3 clone RP11-167P17 map 3p, complete sequence Length = 170293 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ccaggccaggtgaacttcac 373 |||||||||||||||||||| Sbjct: 137243 ccaggccaggtgaacttcac 137224
>emb|X01798.1|MMNGFG1 Mouse gene for nerve growth factor gamma-subunit 5'-region Length = 1291 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ggaacaagggcctgtcctgg 63 |||||||||||||||||||| Sbjct: 1179 ggaacaagggcctgtcctgg 1160
>emb|AL928738.8| Mouse DNA sequence from clone RP23-76M15 on chromosome 4, complete sequence Length = 188568 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 212 gacactggagagcctgtgcaaaga 235 ||||||||||| |||||||||||| Sbjct: 26306 gacactggagatcctgtgcaaaga 26283
>emb|AL731707.12| Mouse DNA sequence from clone RP23-100C5 on chromosome 2, complete sequence Length = 205581 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 gattgaaggtaatagtagac 134 |||||||||||||||||||| Sbjct: 58599 gattgaaggtaatagtagac 58580 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,686,636 Number of Sequences: 3902068 Number of extensions: 2686636 Number of successful extensions: 48487 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48428 Number of HSP's gapped (non-prelim): 59 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)