>G156_PARPR (P13837) G surface protein, allelic form 156 precursor|
          Length = 2715

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
 Frame = -2

Query: 414  QGWSERCHWTARAGSPRHQA**GGHLSTARAGCSLHQGCSGRCRRMV-WVGST---LLHL 247
            Q   +RC WTA +G+             A   C+ +Q  +G C R + W   T      +
Sbjct: 2583 QAARDRCSWTAASGTRATAV----ASKCATHTCATNQATNGACTRFLNWDKKTQQVCTLV 2638

Query: 246  LAAAPASRVASRGNHDCRAWGSVSGLGRCCPEGSSPCG 133
              A  A+  +S  ++DC     VSG    C   +S CG
Sbjct: 2639 SGACTATDPSSFSSNDCFL---VSGYTYTCNASTSKCG 2673

>SOX1_MOUSE (P53783) SOX-1 protein|
          Length = 391

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 214 GRHPAXXXXXKEVEEGTTHPHHPSAPPRTP 303
           G+HP              HPHHP A P  P
Sbjct: 214 GQHPGAGGRHPHAHPAHPHPHHPHAHPHNP 243

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 26.2 bits (56), Expect(2) = 3.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 150 PPGNTDPNHSPSPTP 194
           PP ++ P H+PSP+P
Sbjct: 451 PPPSSSPGHAPSPSP 465



 Score = 21.6 bits (44), Expect(2) = 3.5
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = +1

Query: 184 APRPAIMIPAGRHPAXXXXXKEVEEGTTHPHHPSAPPRTP 303
           +P+P+   P+           +   G  H    S PP TP
Sbjct: 464 SPQPSQASPSPHQELIGQNSNDSSSGGAHSGMGSGPPGTP 503

>SRMS_HUMAN (Q9H3Y6) Tyrosine-protein kinase Srms (EC 2.7.10.2)|
          Length = 488

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +3

Query: 129 GGRKDYYPPGNTDPNHSPSPT----PCN 200
           GG  D+  PG+ DPN  P PT    PC+
Sbjct: 23  GGEPDHGTPGSLDPNTDPVPTLPAEPCS 50

>SOX1_HUMAN (O00570) SOX-1 protein|
          Length = 387

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 214 GRHPAXXXXXKEVEEGTTHPHHPSAPPRTP 303
           G+HP              HPHHP A P  P
Sbjct: 214 GQHPGAGGAHPHRTPAHPHPHHPHAHPHNP 243

>SECY_STRSC (P43416) Preprotein translocase secY subunit|
          Length = 437

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 348 GGHLSTARAGCSLHQGCSGRCRRMVWVGSTLLHLLAAAPASRVASRGNHDCRAWGSVS 175
           GG +   RAG    +  S    R+ W GS  L L+A  P   +A  G +    +G  S
Sbjct: 351 GGFIPGIRAGRPTAEYLSYVLNRITWPGSLYLGLIALVPTMALAPLGANQNFPFGGTS 408

>SECY_STRLI (P49977) Preprotein translocase secY subunit|
          Length = 437

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 348 GGHLSTARAGCSLHQGCSGRCRRMVWVGSTLLHLLAAAPASRVASRGNHDCRAWGSVS 175
           GG +   RAG    +  S    R+ W GS  L L+A  P   +A  G +    +G  S
Sbjct: 351 GGFIPGIRAGRPTAEYLSYVLNRITWPGSLYLGLIALVPTMALAGFGANQNFPFGGTS 408

>SECY_STRCO (P46785) Preprotein translocase secY subunit|
          Length = 437

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 348 GGHLSTARAGCSLHQGCSGRCRRMVWVGSTLLHLLAAAPASRVASRGNHDCRAWGSVS 175
           GG +   RAG    +  S    R+ W GS  L L+A  P   +A  G +    +G  S
Sbjct: 351 GGFIPGIRAGRPTAEYLSYVLNRITWPGSLYLGLIALVPTMALAGFGANQNFPFGGTS 408

>CF015_HUMAN (Q6UXA7) Protein C6orf15 precursor (STG protein)|
          Length = 325

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 266 PTHTIRRHLPEHPWWRLQPALAVDRCPPYYAW 361
           P   I R LP+HPW  L P+++     P   W
Sbjct: 196 PWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGW 227


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,663,357
Number of Sequences: 219361
Number of extensions: 1017125
Number of successful extensions: 3600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3598
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)