ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast48h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HPPD_HORVU (O48604) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 157 7e-39
2HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 94 1e-19
3HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 89 4e-18
4HPPD_ARATH (P93836) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 89 4e-18
5RL22_DROME (P50887) 60S ribosomal protein L22 33 0.27
6FUTSC_DROME (Q9W596) Microtubule-associated protein futsch 33 0.27
7DAB_DROME (P98081) Protein disabled 32 0.46
8WRIP1_MOUSE (Q91XU0) ATPase WRNIP1 (Werner helicase-interacting ... 32 0.61
9PDI_ALTAL (Q00002) Protein disulfide-isomerase (EC 5.3.4.1) (PDI... 32 0.61
10WRIP1_HUMAN (Q96S55) ATPase WRNIP1 (Werner helicase-interacting ... 32 0.79
11WRIP1_RAT (Q8CG07) ATPase WRNIP1 (Werner helicase-interacting pr... 32 0.79
12HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 32 0.79
13BASP_RAT (Q05175) Brain acid soluble protein 1 (BASP1 protein) (... 32 0.79
14HPPD_MYCGR (O42764) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 32 0.79
15BASP_MOUSE (Q91XV3) Brain acid soluble protein 1 (BASP1 protein)... 31 1.0
16SBCC_DEIRA (Q9RT44) Nuclease sbcCD subunit C 31 1.0
17UGGG_SCHPO (Q09140) UDP-glucose:glycoprotein glucosyltransferase... 30 1.8
18RS2_STRCO (O31212) 30S ribosomal protein S2 30 1.8
19DNAE2_BURMA (Q62F99) Error-prone DNA polymerase (EC 2.7.7.7) 30 3.0
20CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5... 29 3.9
21MST3_DROHY (O01395) Axoneme-associated protein mst101(3) 29 3.9
22ACES_ANOST (P56161) Acetylcholinesterase precursor (EC 3.1.1.7) ... 29 5.1
23HRDB_STRCO (P18183) RNA polymerase principal sigma factor hrdB 29 5.1
24HPPD_XENTR (Q5BKL0) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 29 5.1
25H101_CHICK (P08284) Histone H1.01 28 6.7
26H1T_MOUSE (Q07133) Histone H1t (Testicular H1 histone) 28 6.7
27RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing ... 28 6.7
28CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? ... 28 6.7
29IF2_BURS3 (Q39H30) Translation initiation factor IF-2 28 6.7
30RED2_HUMAN (Q9NS39) Double-stranded RNA-specific editase B2 (EC ... 28 8.8
31HC2X_CHLTR (Q46397) Histone H1-like protein HC2 (HC2 nucleoprotein) 28 8.8
32MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substra... 28 8.8
33HPPD_BOVIN (Q5EA20) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 28 8.8
34HPPD_BRARE (Q6TGZ5) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13... 28 8.8
35G6PI_HALSA (Q9HNQ6) Probable glucose-6-phosphate isomerase (EC 5... 28 8.8

>HPPD_HORVU (O48604) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 434

 Score =  157 bits (398), Expect = 7e-39
 Identities = 78/113 (69%), Positives = 78/113 (69%)
 Frame = +1

Query: 82  RPHRMVRFNPRSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHAS 261
           RPHRMVRFNPRSDRFHTLSFHHVEFWC                      DLSTGNSAHAS
Sbjct: 23  RPHRMVRFNPRSDRFHTLSFHHVEFWCADAASAAGRFAFALGAPLAARSDLSTGNSAHAS 82

Query: 262 QLLRSGSLAFLFTAPYANGCDAATASLPXXXXXXXXXXXXXHGIAVRSVALRV 420
           QLLRSGSLAFLFTAPYANGCDAATASLP             HGIAVRSVALRV
Sbjct: 83  QLLRSGSLAFLFTAPYANGCDAATASLPSFSADAARRFSADHGIAVRSVALRV 135



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>HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 436

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 49/109 (44%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
 Frame = +1

Query: 97  VRFNPRSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLLRS 276
           VR NP SD F    FHHVEFWC                      DLSTGNSAHAS LLRS
Sbjct: 25  VRSNPMSDHFPVHRFHHVEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSAHASYLLRS 84

Query: 277 GSLAFLFTAPYANG-CDAATASLPXXXXXXXXXXXXXHGIAVRSVALRV 420
           G L+F+FTAPY+    + ++AS+P             HG+AVR+VA++V
Sbjct: 85  GELSFVFTAPYSPSLAEPSSASIPTFSFSDHRAFTSSHGLAVRAVAIQV 133



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>HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 442

 Score = 89.0 bits (219), Expect = 4e-18
 Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
 Frame = +1

Query: 88  HRMVRFNPRSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQL 267
           +  VR NP+SD F    FHH+EFWC                      DLSTGNS HAS L
Sbjct: 29  NNFVRANPKSDHFAVKRFHHIEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSVHASYL 88

Query: 268 LRSGSLAFLFTAPY--ANGCDAATASLPXXXXXXXXXXXXXHGIAVRSVALRV 420
           +RS +L+F+FTAPY  +    + +A++P             HG+AVR++AL V
Sbjct: 89  VRSANLSFVFTAPYSPSTTTSSGSAAIPSFSASGFHSFAAKHGLAVRAIALEV 141



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>HPPD_ARATH (P93836) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 445

 Score = 89.0 bits (219), Expect = 4e-18
 Identities = 47/116 (40%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
 Frame = +1

Query: 91  RMVRFNPRSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLL 270
           + VR NP+SD+F    FHH+EFWC                      DLSTGN  HAS LL
Sbjct: 31  KFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLL 90

Query: 271 RSGSLAFLFTAPYANGCDA------ATASLPXXXXXXXXXXXXXHGIAVRSVALRV 420
            SG L FLFTAPY+    A       TAS+P             HG+ VR+VA+ V
Sbjct: 91  TSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAIEV 146



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>RL22_DROME (P50887) 60S ribosomal protein L22|
          Length = 299

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = -1

Query: 371 RRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFP---VERSDLAASGAPS 201
           ++A+ A K+ + A AA++P    A K  A +P  +S +A  + P     + D  A+ AP+
Sbjct: 54  KKASEAAKDVKAAAAAAKP---AAAKPAAAKPAAASKDAGKKAPAAAAPKKDAKAAAAPA 110

Query: 200 ANAKRPAAEAAS 165
                PA +AAS
Sbjct: 111 PAKAAPAKKAAS 122



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
 Frame = -1

Query: 413 SATERTAIPWSAENRRAASAEKEGREAVAASQP-----LA*GAVKRKAREPERSSWEACA 249
           +A  + A    A  + AA+++  G++A AA+ P      A      KA   ++++    A
Sbjct: 67  AAAAKPAAAKPAAAKPAAASKDAGKKAPAAAAPKKDAKAAAAPAPAKAAPAKKAASTPAA 126

Query: 248 EFPVERSDLAASGAPSANAKRPAAEA 171
             P +++  A + AP+A A  PAA A
Sbjct: 127 APPAKKAAPAKAAAPAAAAPAPAAAA 152



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>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch|
          Length = 5412

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 27/88 (30%), Positives = 41/88 (46%)
 Frame = -1

Query: 377  ENRRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSA 198
            E+RR + AEK    ++ AS+P +    +    E E+S  E+  E   E+S L     PS 
Sbjct: 3856 ESRRESGAEKSPLASMEASRPTS--VAESVKDETEKSKEESRRESVTEKSPL-----PSK 3908

Query: 197  NAKRPAAEAASAHQNSTWWKESVWKRSL 114
             A RP + A S    +   KE   + S+
Sbjct: 3909 EASRPTSVAESVKDEAEKSKEESRRESV 3936



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>DAB_DROME (P98081) Protein disabled|
          Length = 2224

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
 Frame = -1

Query: 404  ERTAIPWSAENRRAASAEK------EGREAVAASQPLA*GAVKRKAREPERSSWEACAEF 243
            E  A+P     +R ASA +      E R AVA  Q  + G  +R+ R+  R+        
Sbjct: 1820 EEPALPGQKSWKRPASAAETERRLAESRRAVALGQTPSDGEKERRFRKKTRAR------- 1872

Query: 242  PVERSDLAASGAPSANAKRPA 180
                 DLA  GAPSA+   P+
Sbjct: 1873 --SAKDLATVGAPSASTSAPS 1891



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>WRIP1_MOUSE (Q91XU0) ATPase WRNIP1 (Werner helicase-interacting protein 1)|
          Length = 660

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
 Frame = -1

Query: 416 RSATERTAIPWSAENRRAASAEKEGREAVAASQPLA*GAVKRKARE-----PERSSWEAC 252
           R  +E +A+   A    A S+E EG E     +         ++RE     P  S     
Sbjct: 72  RRLSESSALKQPATPTAAESSEGEGEEGDDGGET--------ESRESYDAPPTPSGARLI 123

Query: 251 AEFPVERSDLAASGAPSANAKRPAAEAASAHQNSTWWKES 132
            +FPV RS   +S A     KRPAA AA+   +   W E+
Sbjct: 124 PDFPVARS---SSPARKGMGKRPAAAAAAGSASPRSWDEA 160



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>PDI_ALTAL (Q00002) Protein disulfide-isomerase (EC 5.3.4.1) (PDI) (Allergen|
           Alt a 4) (Fragment)
          Length = 436

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = -1

Query: 422 ATRSATERTAIPWSAENRRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEF 243
           A   ATE      S+    AASA  EG E V +   +A  +    A E  +S   A +E 
Sbjct: 355 AVEDATESAKASASSATDSAASAVSEGTETVKSGASVASDSASSAASEATKSVKSAASEV 414

Query: 242 PVERSDLAASGAPSANA 192
               S  A+  + SA++
Sbjct: 415 TNSASSAASEASASASS 431



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>WRIP1_HUMAN (Q96S55) ATPase WRNIP1 (Werner helicase-interacting protein 1)|
          Length = 665

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
 Frame = -1

Query: 416 RSATERTAIPWSAENRRAASAEKEGREAVAASQPLA*GAVKRKARE-----PERSSWEAC 252
           R  +E +A+   A    A S+E EG E     +         ++RE     P  S     
Sbjct: 72  RRLSESSALKQPATPTAAESSEGEGEEGDDGGET--------ESRESYDAPPTPSGARLI 123

Query: 251 AEFPVERSDLAASGAPSANAKRPAAEAASAHQNSTWWKES 132
            +FPV RS   +S     + KRPAA AA+   +   W E+
Sbjct: 124 PDFPVARS---SSPGRKGSGKRPAAAAAAGSASPRSWDEA 160



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>WRIP1_RAT (Q8CG07) ATPase WRNIP1 (Werner helicase-interacting protein 1)|
          Length = 660

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
 Frame = -1

Query: 416 RSATERTAIPWSAENRRAASAEKEGREAVAASQPLA*GAVKRKARE-----PERSSWEAC 252
           R  +E +A+   A    A S+E EG E     +         ++RE     P  S     
Sbjct: 72  RRLSESSALKQPATPTAAESSEGEGEEGDDGGET--------ESRESYDAPPTPSGARLI 123

Query: 251 AEFPVERSDLAASGAPSANAKRPAAEAASAHQNSTWWKES 132
            +FPV RS   +S A     KRPAA AA+   +   W E+
Sbjct: 124 PDFPVARS---SSPARKGLGKRPAAAAAAGSASPRSWDET 160



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>HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (T-cell reactive protein)
          Length = 399

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 232 LSTGNSAHASQLLRSGSLAFLFTAPYANGCDAATASLPXXXXXXXXXXXXXHGIAVRSVA 411
           L TG+ A AS ++R+G++ F+ T+P  +   A+                  HG  V+ VA
Sbjct: 55  LETGSKAVASHVVRNGNITFILTSPLRSVEQASRFPEDEALLKEIHAHLERHGDGVKDVA 114

Query: 412 LRV 420
             V
Sbjct: 115 FEV 117



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>BASP_RAT (Q05175) Brain acid soluble protein 1 (BASP1 protein) (Neuronal|
           axonal membrane protein NAP-22) (22 kDa neuronal
           tissue-enriched acidic protein)
          Length = 219

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -1

Query: 383 SAENRRAAS-AEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGA 207
           SAE+  AA  A +E  EA     P A    K  A      S  +    P  +   AAS A
Sbjct: 126 SAESTGAADGAPQEEGEAKKTEAPAAGPEAKSDAAPAASDSKPSTEPAPSSKETPAASEA 185

Query: 206 PSANAKRPAAEAASA 162
           PS+ AK PA  A +A
Sbjct: 186 PSSAAKAPAPAAPAA 200



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>HPPD_MYCGR (O42764) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase)
          Length = 419

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
 Frame = +1

Query: 139 FHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLLRSGSLAFLFTAPYANG 318
           +HH E+W                        L TG+   AS ++++  + F+FT+P  + 
Sbjct: 42  YHHAEWWVGNAKQVAQFYITRMGFEPVAHKGLETGSRFFASHVVQNNGVRFVFTSPVRSS 101

Query: 319 CDAATASLPXXXXX---XXXXXXXXHGIAVRSVALRV 420
                 + P                HG  V+ VA  V
Sbjct: 102 ARQTLKAAPLADQARLDEMYDHLDKHGDGVKDVAFEV 138



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>BASP_MOUSE (Q91XV3) Brain acid soluble protein 1 (BASP1 protein) (Neuronal|
           axonal membrane protein NAP-22) (22 kDa neuronal
           tissue-enriched acidic protein)
          Length = 225

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
 Frame = -1

Query: 383 SAENRRAA--SAEKEGR----EAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDL 222
           SAE+  AA  +A +EG     EA AA+ P A       A + + SS E     P  +   
Sbjct: 127 SAESTGAADGAAPEEGEAKKTEAPAAAGPEAKSDAAPAASDSKPSSAEPA---PSSKETP 183

Query: 221 AASGAPSANAKRPAAEAASA 162
           AAS APS+ AK PA  A +A
Sbjct: 184 AASEAPSSAAKAPAPAAPAA 203



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>SBCC_DEIRA (Q9RT44) Nuclease sbcCD subunit C|
          Length = 909

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 23/96 (23%), Positives = 37/96 (38%)
 Frame = -1

Query: 410 ATERTAIPWSAENRRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVER 231
           A ER  I +  + R  A AE   + A A +        + +A+EP         E   + 
Sbjct: 288 AAERARIAYDRQTRELAGAESALQSAQAQAARADAALTQAQAQEPR------IPELEEQA 341

Query: 230 SDLAASGAPSANAKRPAAEAASAHQNSTWWKESVWK 123
           + L  + A +A  KR      + H N   W E  ++
Sbjct: 342 NALREAEADAARLKRAGGSVQATHANPLPWDEDAFE 377



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>UGGG_SCHPO (Q09140) UDP-glucose:glycoprotein glucosyltransferase precursor (EC|
            2.4.1.-) (UDP--Glc:glycoprotein glucosyltransferase)
            (UGT)
          Length = 1448

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 236  ERSDLAASGAPSANAKRPAAEAASAHQNSTWWKESVWKRSLRGLK 102
            E  D+   GAP      P  ++    +   +WK+  WK+ LRGLK
Sbjct: 1270 ELMDMDLHGAPYGYT--PMCDSREEMEGFRFWKKGYWKKFLRGLK 1312



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>RS2_STRCO (O31212) 30S ribosomal protein S2|
          Length = 310

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = -1

Query: 329 AASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSANA-KRPAAEAASAHQ 156
           AA +PLA  A +R   E E++  +  AE   + ++  A+ AP+A A + PAAEAA A +
Sbjct: 241 AAGEPLA--AWERDLLEGEKAEKKDDAEAAEKPAEAPAAEAPAAEAAEAPAAEAAPAEE 297



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>DNAE2_BURMA (Q62F99) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1063

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -1

Query: 422  ATRSATERTAIPWSA--ENRRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACA 249
            A R    R A P+++  E  R A  E+   EA+AA+   A  A  R+      + W+A A
Sbjct: 855  ARRIGAARAAGPFASVDELARRACLERRDLEALAAANAFATLAGNRRD-----ALWQAVA 909

Query: 248  EFPVERSDLAASGAPS 201
              P++ +   A GAP+
Sbjct: 910  AAPIDEAVRPALGAPT 925



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>CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)|
           (CDC2-related protein kinase 5)
          Length = 1511

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
 Frame = -1

Query: 416 RSATERTAIPWSAENRRAASAEK--EGREAVAASQPLA*GAVKRKAREPERSSWEACAEF 243
           RSA  R+  P+S+ + R+ S  +    R   ++  P         A E  ++     AE 
Sbjct: 406 RSAKSRSRSPYSSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKNKKARAAE- 464

Query: 242 PVERSDLAASGAPSANAKRPAAEAASAHQNST 147
              R+  AA  A +A A   AA+AA A   ST
Sbjct: 465 -AARAAEAAKAAEAAKAAEAAAKAAKASNAST 495



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>MST3_DROHY (O01395) Axoneme-associated protein mst101(3)|
          Length = 275

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = -1

Query: 383 SAENRRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAP 204
           +A+ + A  A K+  E VAA +     A K+K  E ++ + EA  +   E + L      
Sbjct: 195 AAKKKAAEEAAKKKAEEVAAKKKADEAAAKKKCAEAKKKAEEAALKKMCEEAALKKMCEE 254

Query: 203 SANAKRPAAEAASAHQNST 147
           +A  K+ A  A +A +  +
Sbjct: 255 AALQKKCAEAAKNAKKTDS 273



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>ACES_ANOST (P56161) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)|
          Length = 664

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 235 STGNSAHASQLLRSGSLAFLFTAPYANG 318
           + GN   AS   R G+  FL+ APY NG
Sbjct: 193 AVGNVIVASMQYRVGAFGFLYLAPYING 220



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>HRDB_STRCO (P18183) RNA polymerase principal sigma factor hrdB|
          Length = 511

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -1

Query: 365 AASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSANAKR 186
           +A+  K  R++VAA  P             +R++ +A A  PV      A  AP+A A  
Sbjct: 72  SAAEPKRTRKSVAAKSPA------------KRTATKAVAAKPVTSRKATAPAAPAAPATE 119

Query: 185 PAAEAASAHQNSTWWKESVWKRS 117
           PAA    A       K++  K++
Sbjct: 120 PAAVEEEAPAKKAAAKKTTAKKA 142



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>HPPD_XENTR (Q5BKL0) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 394

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/62 (24%), Positives = 22/62 (35%)
 Frame = +1

Query: 133 LSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLLRSGSLAFLFTAPYA 312
           LSFHH+ FW                        L TG+    S  ++   + F+F +P  
Sbjct: 17  LSFHHLTFWVGNAKQAASFYCDKFGFEPCAYKGLETGSRDVVSHAIKQDKIIFVFQSPLN 76

Query: 313 NG 318
            G
Sbjct: 77  PG 78



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>H101_CHICK (P08284) Histone H1.01|
          Length = 218

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
 Frame = -1

Query: 380 AENRRAASAEKEG----REAVAASQPLA*GAVKR---KAREPERSSWEACAEFPVERSDL 222
           A  +RA +A+ +     + A AA +P    AVK+   KA++P  ++ +  A+ P +    
Sbjct: 118 APRKRATAAKPKKPAAKKPAAAAKKPKKAAAVKKSPKKAKKPAAAATKKAAKSPKKA--- 174

Query: 221 AASGAPSANAKRPAAEAA 168
           A +G P   AK PA   A
Sbjct: 175 AKAGRPKKAAKSPAKAKA 192



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>H1T_MOUSE (Q07133) Histone H1t (Testicular H1 histone)|
          Length = 207

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
 Frame = -1

Query: 374 NRRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSAN 195
           +++AAS   +G+   +AS       + R +R P+ S  +A  +     +  + SG  +  
Sbjct: 109 SKKAASGNDKGKGKKSASAKAKKMGLPRASRSPKSSKTKAVKKPKATPTKASGSGRKTKG 168

Query: 194 AK-----RPAAEAASAHQNSTWWKESVWKRSLR 111
           AK     +  A+A +A+ NS   K  + K  LR
Sbjct: 169 AKGVQQRKSPAKARAANPNSGKAKMVMQKTDLR 201



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>RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing homolog|
           (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes)
          Length = 196

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 269 SSWEACAEFPVERSDLAASGAPSANAKRPAAEAASAHQNSTWWKES 132
           +S EA A +P+  ++LA +  P A    PAA AA+ H    W+  S
Sbjct: 139 ASPEAWAPYPLYTAELAPA-IPHAAFTYPAAAAAALHAQMRWYPPS 183



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>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)|
           (Zinc finger protein Cezanne 2) (OTU domain-containing
           protein 7)
          Length = 926

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = -1

Query: 383 SAENRRAASAEKEGREAVAASQPL-A*GAVKRKAREPERSSWEACAEFPVERSDLAASGA 207
           SA+ R +A  E+  R+A AA+    A   VKR AR PE                  A GA
Sbjct: 663 SAQERFSAEQEQRRRDAAAAAAAATATATVKRPARRPE------------------AEGA 704

Query: 206 PSANAKRPAAEAASAHQ 156
           P      P   AA   Q
Sbjct: 705 PGPERASPGPTAAQPTQ 721



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>IF2_BURS3 (Q39H30) Translation initiation factor IF-2|
          Length = 972

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = -1

Query: 371 RRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSANA 192
           RR   A +E       +Q L     + +  E ER + E  AE    R++  A+      A
Sbjct: 124 RREEEARREADLLEKQAQELRERQERLEREEAERRAREEAAEAERRRAEEEAA------A 177

Query: 191 KRPAAEAASAHQNS 150
           KR AAEAA+A Q +
Sbjct: 178 KRVAAEAAAAQQQA 191



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>RED2_HUMAN (Q9NS39) Double-stranded RNA-specific editase B2 (EC 3.5.-.-)|
           (dsRNA adenosine deaminase B2) (RNA-dependent adenosine
           deaminase 3) (RNA-editing deaminase 2) (RNA-editing
           enzyme 2)
          Length = 739

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
 Frame = -1

Query: 242 PVERSDLAASGAPSANAKRPAAEAASAH--QNSTWWKESVW 126
           P    D A  GAP A  KRP  E    H  +    WK+  W
Sbjct: 82  PPPSGDRARGGAPGAKRKRPLEEGNGGHLCKLQLVWKKLSW 122



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>HC2X_CHLTR (Q46397) Histone H1-like protein HC2 (HC2 nucleoprotein)|
          Length = 221

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
 Frame = -1

Query: 416 RSATERTAIPWSAENRRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPV 237
           + AT + A    A  ++  + +   ++ VAA +P+A  A  +KA   + ++ +  A   V
Sbjct: 62  KKATAKKAPVRKAVAKKTVARKTVAKKTVAARKPVAKKATAKKAPVRKVAAKKTVARKTV 121

Query: 236 ERSDLAA-------SGAPSANAKRPAAEAASAHQNSTWWKESVWKRS---LRGLKRTIRC 87
            +  +AA       + A  A  ++  A+   A + ++  K SV  ++   ++  K T  C
Sbjct: 122 AKKTVAARKPVAKKATAKKAPVRKAVAKKTVAKRVASTKKSSVAVKAGVCMKKHKHTAAC 181

Query: 86  GR 81
           GR
Sbjct: 182 GR 183



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>MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
           (Protein kinase C substrate, 80 kDa protein, light
           chain) (PKCSL) (80K-L protein)
          Length = 331

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 362 ASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSANAKRP 183
           A+AE+ G  AVA+S   A G      +    +S  A AE   +    A   AP+A+ + P
Sbjct: 13  AAAERPGEAAVASSPSKANGQENGHVKVNGDAS-PAAAESGAKEELQANGSAPAADKEEP 71

Query: 182 AAEAASA 162
           AA  + A
Sbjct: 72  AAAGSGA 78



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>HPPD_BOVIN (Q5EA20) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 392

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/64 (21%), Positives = 24/64 (37%)
 Frame = +1

Query: 112 RSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLLRSGSLAF 291
           + +R   L FH V FW                        L TG+    S +++ G + F
Sbjct: 9   KPERGRFLHFHSVTFWVGNAKQAASYYCSKLGFEPLAYKGLETGSREVVSHVVKQGQIVF 68

Query: 292 LFTA 303
           +F++
Sbjct: 69  VFSS 72



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>HPPD_BRARE (Q6TGZ5) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid
           oxidase)
          Length = 397

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/62 (22%), Positives = 23/62 (37%)
 Frame = +1

Query: 112 RSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLLRSGSLAF 291
           + +R   L+FHH++FW                        L TG+    S  +R   + F
Sbjct: 10  KPERGKFLNFHHIKFWVGNAKQAAVFYCDKFGFEPLAYKGLETGSREVVSHAVRQDKIIF 69

Query: 292 LF 297
           +F
Sbjct: 70  VF 71



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>G6PI_HALSA (Q9HNQ6) Probable glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 426

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 251 AEFPVERSDLAASGAPSANAKRPAAEAAS 165
           AEF    + LAASG P+   + PA +A S
Sbjct: 343 AEFEATAASLAASGVPTVRVEVPAVDARS 371


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,656,801
Number of Sequences: 219361
Number of extensions: 231432
Number of successful extensions: 1342
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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