ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48h07 |
|---|---|
| Clone Library Name | barley_pub |
>MODU_DROME (P13469) DNA-binding protein modulo| Length = 542 Score = 36.2 bits (82), Expect = 0.020 Identities = 20/48 (41%), Positives = 30/48 (62%) Frame = +2 Query: 215 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKD 358 R++ VTN++ ATE D+++ F+ SG+IE + M Q A V FKD Sbjct: 420 RAILVTNLTSDATEADLRKVFNDSGEIESIIM-----LGQKAVVKFKD 462
>VIP1_SCHPO (P87216) Protein vip1| Length = 257 Score = 35.0 bits (79), Expect = 0.045 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +2 Query: 221 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFK 355 V VTN+S TE+ I +FFSF G + ++ + E +Q A + F+ Sbjct: 5 VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFE 48
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 31.6 bits (70), Expect = 0.50 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = +2 Query: 218 SVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQV---AYVTFKD 358 +V V N+S +ATE D+ F GDI+ + + + + ++ YVTF D Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSD 416
>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54| kDa nuclear protein) (p54) Length = 484 Score = 30.8 bits (68), Expect = 0.85 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 221 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDE-----WSQVAYVTFKD 358 ++VTNVS SA+ + ++ F F G I+ + + D+ S+V +V F D Sbjct: 35 IQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHD 85
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 227 VTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDE 325 V+N+ + T++D+K F GDIE V ++ D+ Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ 376
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +2 Query: 215 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKD 358 R V V N + D++ F G ++ VDMKSG A+V F+D Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSG-----YAFVYFED 44
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = +2 Query: 221 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKD 358 V + +S + E+DI+ FFS G + VD+K+G +V F+D Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNG-----YGFVEFED 44
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +2 Query: 215 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKD 358 + V V N+ E+++++ F G I++VD+KSG A+V F+D Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSG-RGPAFAFVEFED 55
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +2 Query: 221 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSG 319 V + +S A E+D++ FF G I VD+K+G Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNG 36
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 227 VTNVSLSATEQDIKEFFSFSGDIEHVDM 310 V N+S TE+ I E FS SGD++ + M Sbjct: 36 VGNLSFYTTEEQIHELFSKSGDVKRIVM 63
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +2 Query: 221 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSG 319 V + +S A E+D++ FF G I VD+K+G Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNG 36
>GLTB_PORPU (P51375) Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)| (Fd-GOGAT) Length = 1538 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -3 Query: 344 HMQLETTRHHFSYPHVQCLLKKKRIP*CLAQ 252 ++ ET RH +S P + L+ K R+P C Q Sbjct: 701 YLAFETARHWWSNPKTKMLMSKGRLPACNIQ 731
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +2 Query: 215 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKD 358 R V V + TE +++EFFS GD+ +D+ + A+VTF D Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDV--MDVFIPKPFRAFAFVTFAD 236 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 227 VTNVSLSATEQDIKEFFSFSGDIEHVDMK 313 V + TEQD+KE+FS G++ V +K Sbjct: 108 VLGLPWKTTEQDLKEYFSTFGEVLMVQVK 136
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +2 Query: 215 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKD 358 RSV V N+ E+ + + F GDIE+V + + + AYV FKD Sbjct: 359 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKD 409
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +2 Query: 227 VTNVSLSATEQDIKEFFSFSGDIEHVDM 310 V N+S TE+ I E FS SGDI+ + M Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIM 71
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +2 Query: 227 VTNVSLSATEQDIKEFFSFSGDIEHVDM 310 V N+S TE+ I E FS SGDI+ + M Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIM 71
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +2 Query: 227 VTNVSLSATEQDIKEFFSFSGDIEHVDM 310 V N+S TE+ I E FS SGDI+ + M Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIM 71
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +2 Query: 233 NVSLSATEQDIKEFFSFSGDIEHVDMKSG 319 N A E D++ F G +E VDMK+G Sbjct: 8 NFEYDARESDLERLFRKYGKVERVDMKAG 36
>GLGB_DEBHA (Q6BXN1) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) Length = 711 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 266 KEFFSFSGDIEHVDMKSGDEWSQVAYVTFKD 358 K F+F G ++H+D K G S AYV+ K+ Sbjct: 580 KFLFAFDGAMQHLDTKYGILLSSQAYVSLKN 610
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Frame = +2 Query: 215 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKD 358 + + V ++ ATE+ I+E+F G+IE +++ + ++ ++TFK+ Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKE 209
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +2 Query: 215 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKD 358 RS+ V N+ E+ + + F GDIE+V + + + AYV FKD Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKD 329
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%) Frame = +2 Query: 227 VTNVSLSATEQDIKEFFSFSGDIEHV----DMKSG--DEWSQVAYVTFKD 358 VT V ATE+DI + F+ G+I+++ D ++G ++ V Y T+K+ Sbjct: 77 VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKE 126
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%) Frame = +2 Query: 227 VTNVSLSATEQDIKEFFSFSGDIEHV----DMKSG--DEWSQVAYVTFKD 358 VT V ATE+DI + F+ G+I+++ D ++G ++ V Y T+K+ Sbjct: 77 VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKE 126
>CHP1_SCHPO (Q10103) Chromo domain protein 1| Length = 960 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%) Frame = +2 Query: 218 SVKVTNVSLSATEQDIKEFFSF-SGDIEHVDMKS--GDEWSQVAYVTF 352 ++ V++ S S T+QDI +F+F G+IE +KS D+ +AY+ F Sbjct: 312 TILVSDNSGSLTKQDILSYFAFIKGNIEVFFLKSPKKDKVCNMAYIQF 359
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +2 Query: 233 NVSLSATEQDIKEFFSFSGDIEHVDMKSG 319 N A E D++ F G +E VDMK+G Sbjct: 8 NFEYDAREGDLERLFRKYGKVERVDMKAG 36 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,169,679 Number of Sequences: 219361 Number of extensions: 368526 Number of successful extensions: 1453 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1433 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1453 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
