>SECA_ECOLI (P10408) Preprotein translocase secA subunit|
          Length = 901

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -1

Query: 204  QDRVPEEVEQLQHQ----DERLRQDDAVAH*REPHGRQARAHACN*RERKHGRSESGRWD 37
            Q R+PEEVE+L+ Q     ERL Q   ++H ++     A A A    ERK GR++     
Sbjct: 830  QVRMPEEVEELEQQRRMEAERLAQMQQLSH-QDDDSAAAAALAAQTGERKVGRNDPCPCG 888

Query: 36   GGRKERR 16
             G+K ++
Sbjct: 889  SGKKYKQ 895

>TCF17_HUMAN (O60765) Zinc finger protein 354A (Transcription factor 17) (Zinc|
           finger protein eZNF)
          Length = 605

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 221 SEERQSKTACRRKSSSCSTRMSGCGRM 141
           +EE   K    RK+SSCST +SGC R+
Sbjct: 321 AEENPCKYNPGRKASSCSTSLSGCQRI 347

>POL_SIVSP (P19505) Pol polyprotein [Contains: Protease (Retropepsin) (EC|
           3.4.23.-); Reverse transcriptase/ribonuclease H (EC
           2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
          Length = 1022

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 179 SSCSTRMSGCGRMTQ*HTDGNPMAGRHARTL 87
           ++CS R S CG   + H DG    G    TL
Sbjct: 32  TNCSPRGSSCGSTEELHEDGQKAEGEQRETL 62

>POL_SIVS4 (P12502) Pol polyprotein [Contains: Protease (Retropepsin) (EC|
           3.4.23.-); Reverse transcriptase/ribonuclease H (EC
           2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
          Length = 1019

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 179 SSCSTRMSGCGRMTQ*HTDGNPMAGRHARTL 87
           ++CS R S CG   + H DG    G    TL
Sbjct: 29  TNCSPRGSSCGSTEELHEDGQKAEGEQRETL 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,508,912
Number of Sequences: 219361
Number of extensions: 234418
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)