ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469397.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1470 Score = 222 bits (112), Expect = 7e-55 Identities = 199/228 (87%) Strand = Plus / Plus Query: 158 ggagtccgcggccgcgcgggggcggctcgagtgtctcagccaggtcgccggcgtgctcgg 217 |||||| |||||||||| ||||||||| |||| || |||||||| ||||| ||||| || Sbjct: 156 ggagtcggcggccgcgcaggggcggctggagtcgctgagccaggtggccggggtgctggg 215 Query: 218 cacgcagtggggcgacgagggaaagggcaagctcgtcgacatcctcgcccaacgcttcga 277 ||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| Sbjct: 216 cacgcagtggggcgacgaggggaagggaaagctcgtcgacatcctcgcgcagcgcttcga 275 Query: 278 cgtcgtcgcccgctgccagggaggagctaatgctgggcacaccatatataattccgaggg 337 | ||||||| ||||||||||| ||||||||||||||||| || ||||||||||| ||||| Sbjct: 276 catcgtcgcacgctgccagggtggagctaatgctgggcatactatatataattcagaggg 335 Query: 338 gaagaagttctcgctgcacctcgttccgtcggggatcctcaatgagaa 385 |||||||| || | || || ||||| || || |||||||||||||| Sbjct: 336 aaagaagttttcattacatcttgttccatcaggtatcctcaatgagaa 383
>dbj|AK120407.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091H09, full insert sequence Length = 1742 Score = 222 bits (112), Expect = 7e-55 Identities = 199/228 (87%) Strand = Plus / Plus Query: 158 ggagtccgcggccgcgcgggggcggctcgagtgtctcagccaggtcgccggcgtgctcgg 217 |||||| |||||||||| ||||||||| |||| || |||||||| ||||| ||||| || Sbjct: 198 ggagtcggcggccgcgcaggggcggctggagtcgctgagccaggtggccggggtgctggg 257 Query: 218 cacgcagtggggcgacgagggaaagggcaagctcgtcgacatcctcgcccaacgcttcga 277 ||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| Sbjct: 258 cacgcagtggggcgacgaggggaagggaaagctcgtcgacatcctcgcgcagcgcttcga 317 Query: 278 cgtcgtcgcccgctgccagggaggagctaatgctgggcacaccatatataattccgaggg 337 | ||||||| ||||||||||| ||||||||||||||||| || ||||||||||| ||||| Sbjct: 318 catcgtcgcacgctgccagggtggagctaatgctgggcatactatatataattcagaggg 377 Query: 338 gaagaagttctcgctgcacctcgttccgtcggggatcctcaatgagaa 385 |||||||| || | || || ||||| || || |||||||||||||| Sbjct: 378 aaagaagttttcattacatcttgttccatcaggtatcctcaatgagaa 425
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 159 bits (80), Expect = 9e-36 Identities = 125/140 (89%) Strand = Plus / Plus Query: 158 ggagtccgcggccgcgcgggggcggctcgagtgtctcagccaggtcgccggcgtgctcgg 217 |||||| |||||||||| ||||||||| |||| || |||||||| ||||| ||||| || Sbjct: 27744340 ggagtcggcggccgcgcaggggcggctggagtcgctgagccaggtggccggggtgctggg 27744399 Query: 218 cacgcagtggggcgacgagggaaagggcaagctcgtcgacatcctcgcccaacgcttcga 277 ||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| Sbjct: 27744400 cacgcagtggggcgacgaggggaagggaaagctcgtcgacatcctcgcgcagcgcttcga 27744459 Query: 278 cgtcgtcgcccgctgccagg 297 | ||||||| |||||||||| Sbjct: 27744460 catcgtcgcacgctgccagg 27744479 Score = 93.7 bits (47), Expect = 4e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 195 agccaggtcgccggcgtgctcggcacgcagtggggcgacgagggaaagggcaagctcgtc 254 ||||||||| |||| ||||| || ||||||||||||||||||| ||||| ||||||||| Sbjct: 3971463 agccaggtctccggggtgctggggtcgcagtggggcgacgaggggaaggggaagctcgtc 3971404 Query: 255 gacatcctcgcccaacgcttcgacgtcgtcgcccgctgccagg 297 ||| | ||||||| ||||||||| ||||||| || ||||||| Sbjct: 3971403 gacgtgctcgcccctcgcttcgacatcgtcgcgcgttgccagg 3971361 Score = 69.9 bits (35), Expect = 6e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 295 agggaggagctaatgctgggcacaccatatataattccgaggggaagaagttctcgctgc 354 |||| ||||||||||||||||| || ||||||||||| ||||| |||||||| || | | Sbjct: 27745981 agggtggagctaatgctgggcatactatatataattcagagggaaagaagttttcattac 27746040 Query: 355 acctcgttccgtcggggatcctcaatgagaa 385 | || ||||| || || |||||||||||||| Sbjct: 27746041 atcttgttccatcaggtatcctcaatgagaa 27746071
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 159 bits (80), Expect = 9e-36 Identities = 125/140 (89%) Strand = Plus / Plus Query: 158 ggagtccgcggccgcgcgggggcggctcgagtgtctcagccaggtcgccggcgtgctcgg 217 |||||| |||||||||| ||||||||| |||| || |||||||| ||||| ||||| || Sbjct: 27835663 ggagtcggcggccgcgcaggggcggctggagtcgctgagccaggtggccggggtgctggg 27835722 Query: 218 cacgcagtggggcgacgagggaaagggcaagctcgtcgacatcctcgcccaacgcttcga 277 ||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| Sbjct: 27835723 cacgcagtggggcgacgaggggaagggaaagctcgtcgacatcctcgcgcagcgcttcga 27835782 Query: 278 cgtcgtcgcccgctgccagg 297 | ||||||| |||||||||| Sbjct: 27835783 catcgtcgcacgctgccagg 27835802 Score = 93.7 bits (47), Expect = 4e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 195 agccaggtcgccggcgtgctcggcacgcagtggggcgacgagggaaagggcaagctcgtc 254 ||||||||| |||| ||||| || ||||||||||||||||||| ||||| ||||||||| Sbjct: 3971574 agccaggtctccggggtgctggggtcgcagtggggcgacgaggggaaggggaagctcgtc 3971515 Query: 255 gacatcctcgcccaacgcttcgacgtcgtcgcccgctgccagg 297 ||| | ||||||| ||||||||| ||||||| || ||||||| Sbjct: 3971514 gacgtgctcgcccctcgcttcgacatcgtcgcgcgttgccagg 3971472 Score = 69.9 bits (35), Expect = 6e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 295 agggaggagctaatgctgggcacaccatatataattccgaggggaagaagttctcgctgc 354 |||| ||||||||||||||||| || ||||||||||| ||||| |||||||| || | | Sbjct: 27837304 agggtggagctaatgctgggcatactatatataattcagagggaaagaagttttcattac 27837363 Query: 355 acctcgttccgtcggggatcctcaatgagaa 385 | || ||||| || || |||||||||||||| Sbjct: 27837364 atcttgttccatcaggtatcctcaatgagaa 27837394
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 159 bits (80), Expect = 9e-36 Identities = 125/140 (89%) Strand = Plus / Minus Query: 158 ggagtccgcggccgcgcgggggcggctcgagtgtctcagccaggtcgccggcgtgctcgg 217 |||||| |||||||||| ||||||||| |||| || |||||||| ||||| ||||| || Sbjct: 69554 ggagtcggcggccgcgcaggggcggctggagtcgctgagccaggtggccggggtgctggg 69495 Query: 218 cacgcagtggggcgacgagggaaagggcaagctcgtcgacatcctcgcccaacgcttcga 277 ||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| Sbjct: 69494 cacgcagtggggcgacgaggggaagggaaagctcgtcgacatcctcgcgcagcgcttcga 69435 Query: 278 cgtcgtcgcccgctgccagg 297 | ||||||| |||||||||| Sbjct: 69434 catcgtcgcacgctgccagg 69415 Score = 69.9 bits (35), Expect = 6e-09 Identities = 77/91 (84%) Strand = Plus / Minus Query: 295 agggaggagctaatgctgggcacaccatatataattccgaggggaagaagttctcgctgc 354 |||| ||||||||||||||||| || ||||||||||| ||||| |||||||| || | | Sbjct: 67913 agggtggagctaatgctgggcatactatatataattcagagggaaagaagttttcattac 67854 Query: 355 acctcgttccgtcggggatcctcaatgagaa 385 | || ||||| || || |||||||||||||| Sbjct: 67853 atcttgttccatcaggtatcctcaatgagaa 67823
>gb|U49387.1|TAU49387 Triticum aestivum adenylosuccinate synthetase mRNA, partial cds Length = 1741 Score = 135 bits (68), Expect = 1e-28 Identities = 113/128 (88%) Strand = Plus / Plus Query: 195 agccaggtcgccggcgtgctcggcacgcagtggggcgacgagggaaagggcaagctcgtc 254 ||||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||| Sbjct: 154 agccaggtctccggcgtgctcgggtcgcagtggggcgacgaggggaaggggaagctcgtc 213 Query: 255 gacatcctcgcccaacgcttcgacgtcgtcgcccgctgccagggaggagctaatgctggg 314 ||| | ||||||| ||||||||| ||||||| || |||||||| ||||| |||||||| Sbjct: 214 gacgtgctcgccccccgcttcgacatcgtcgcgcgttgccagggtggagcaaatgctgga 273 Query: 315 cacaccat 322 |||||||| Sbjct: 274 cacaccat 281
>dbj|AK066881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J03, full insert sequence Length = 1662 Score = 121 bits (61), Expect = 2e-24 Identities = 118/137 (86%) Strand = Plus / Plus Query: 195 agccaggtcgccggcgtgctcggcacgcagtggggcgacgagggaaagggcaagctcgtc 254 ||||||||| |||| ||||| || ||||||||||||||||||| ||||| ||||||||| Sbjct: 209 agccaggtctccggggtgctggggtcgcagtggggcgacgaggggaaggggaagctcgtc 268 Query: 255 gacatcctcgcccaacgcttcgacgtcgtcgcccgctgccagggaggagctaatgctggg 314 ||| | ||||||| ||||||||| ||||||| || |||||||| ||||| |||||||| Sbjct: 269 gacgtgctcgcccctcgcttcgacatcgtcgcgcgttgccagggcggagcaaatgctgga 328 Query: 315 cacaccatatataattc 331 |||||||| || ||||| Sbjct: 329 cacaccatttacaattc 345
>gb|U49388.1|ZMU49388 Zea mays adenylosuccinate synthetase mRNA, complete cds Length = 1835 Score = 107 bits (54), Expect = 3e-20 Identities = 102/118 (86%) Strand = Plus / Plus Query: 205 ccggcgtgctcggcacgcagtggggcgacgagggaaagggcaagctcgtcgacatcctcg 264 |||||||||| || |||||||||||||||||||||||||||||||||||||| | |||| Sbjct: 205 ccggcgtgctggggtcgcagtggggcgacgagggaaagggcaagctcgtcgacgtgctcg 264 Query: 265 cccaacgcttcgacgtcgtcgcccgctgccagggaggagctaatgctgggcacaccat 322 ||| ||||||||| | ||||| || |||||||| ||||| || ||||| || ||||| Sbjct: 265 ccccccgcttcgacatagtcgcgcgttgccaggggggagcgaacgctggacataccat 322
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 93.7 bits (47), Expect = 4e-16 Identities = 89/103 (86%) Strand = Plus / Plus Query: 195 agccaggtcgccggcgtgctcggcacgcagtggggcgacgagggaaagggcaagctcgtc 254 ||||||||| |||| ||||| || ||||||||||||||||||| ||||| ||||||||| Sbjct: 127905 agccaggtctccggggtgctggggtcgcagtggggcgacgaggggaaggggaagctcgtc 127964 Query: 255 gacatcctcgcccaacgcttcgacgtcgtcgcccgctgccagg 297 ||| | ||||||| ||||||||| ||||||| || ||||||| Sbjct: 127965 gacgtgctcgcccctcgcttcgacatcgtcgcgcgttgccagg 128007
>gb|BT013108.1| Lycopersicon esculentum clone 114394R, mRNA sequence Length = 1817 Score = 75.8 bits (38), Expect = 1e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 294 cagggaggagctaatgctgggcacaccatatataattccgaggggaagaagttctcgctg 353 ||||||||||| |||||||||||||| || || ||||| |||||||||||||| | ||| Sbjct: 394 cagggaggagccaatgctgggcacactatttacaattctgaggggaagaagtttgctctg 453 Query: 354 cacctcgttccgtcggggatcctcaatgag 383 ||||| || || || ||||| ||||||||| Sbjct: 454 caccttgtcccttcagggattctcaatgag 483
>gb|AY429425.1| Nicotiana tabacum adenylosuccinate synthase (purA) mRNA, complete cds Length = 2009 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 288 cgctgccagggaggagctaatgctgggcacaccatatataattccgaggggaagaagttc 347 ||||| ||||| ||||| |||||||| ||||| || || ||||| |||||||||||||| Sbjct: 369 cgctgtcaggggggagccaatgctggtcacactatttacaattctgaggggaagaagttt 428 Query: 348 tcgctgcacctcgttccgtcggggatcctcaatgag 383 | |||||||| ||||| || ||||| ||||||||| Sbjct: 429 gcactgcaccttgttccttcagggattctcaatgag 464
>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence Length = 105308 Score = 67.9 bits (34), Expect = 2e-08 Identities = 97/118 (82%) Strand = Plus / Minus Query: 289 gctgccagggaggagctaatgctgggcacaccatatataattccgaggggaagaagttct 348 |||| ||||| ||||| ||||||||||| || ||||| ||||| |||||||||||||| Sbjct: 40651 gctgtcagggtggagccaatgctgggcatactatatacaattctgaggggaagaagtttg 40592 Query: 349 cgctgcacctcgttccgtcggggatcctcaatgagaacacgcagtgtgtgattggtaa 406 | |||||||| || || || ||||| ||||| ||| | || | |||||| |||||||| Sbjct: 40591 ctctgcaccttgtcccttctgggattctcaacgaggaaactctgtgtgttattggtaa 40534
>ref|NM_115621.2| Arabidopsis thaliana GTP binding / adenylosuccinate synthase AT3G57610 mRNA, complete cds Length = 1763 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Plus Query: 243 ggcaagctcgtcgacatcctcgcccaacgcttcgacgtcgtcgcccgctgccagggagga 302 ||||| ||||| |||||| | ||||||| ||| ||| |||| || || || ||||| ||| Sbjct: 299 ggcaaactcgttgacatcttagcccaacactttgacatcgttgctcgttgtcagggtgga 358 Query: 303 gctaatgctgggcacaccatatataattccgaggggaagaa 343 ||||||||||| ||||| ||||| ||||| ||||| ||||| Sbjct: 359 gctaatgctggacacactatatacaattcagagggaaagaa 399
>gb|AY081461.1| Arabidopsis thaliana adenylosuccinate synthetase (At3g57610) mRNA, complete cds Length = 1509 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Plus Query: 243 ggcaagctcgtcgacatcctcgcccaacgcttcgacgtcgtcgcccgctgccagggagga 302 ||||| ||||| |||||| | ||||||| ||| ||| |||| || || || ||||| ||| Sbjct: 244 ggcaaactcgttgacatcttagcccaacactttgacatcgttgctcgttgtcagggtgga 303 Query: 303 gctaatgctgggcacaccatatataattccgaggggaagaa 343 ||||||||||| ||||| ||||| ||||| ||||| ||||| Sbjct: 304 gctaatgctggacacactatatacaattcagagggaaagaa 344
>gb|AY054606.1| Arabidopsis thaliana adenylosuccinate synthetase (At3g57610; F15B8.200) mRNA, complete cds Length = 1717 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Plus Query: 243 ggcaagctcgtcgacatcctcgcccaacgcttcgacgtcgtcgcccgctgccagggagga 302 ||||| ||||| |||||| | ||||||| ||| ||| |||| || || || ||||| ||| Sbjct: 299 ggcaaactcgttgacatcttagcccaacactttgacatcgttgctcgttgtcagggtgga 358 Query: 303 gctaatgctgggcacaccatatataattccgaggggaagaa 343 ||||||||||| ||||| ||||| ||||| ||||| ||||| Sbjct: 359 gctaatgctggacacactatatacaattcagagggaaagaa 399
>emb|BX823799.1|CNS0A4WN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS76ZE05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1616 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Plus Query: 243 ggcaagctcgtcgacatcctcgcccaacgcttcgacgtcgtcgcccgctgccagggagga 302 ||||| ||||| |||||| | ||||||| ||| ||| |||| || || || ||||| ||| Sbjct: 290 ggcaaactcgttgacatcttagcccaacactttgacatcgttgctcgttgtcagggtgga 349 Query: 303 gctaatgctgggcacaccatatataattccgaggggaagaa 343 ||||||||||| ||||| ||||| ||||| ||||| ||||| Sbjct: 350 gctaatgctggacacactatatacaattcagagggaaagaa 390
>gb|U49389.1|ATU49389 Arabidopsis thaliana adenylosuccinate synthetase mRNA, complete cds Length = 1549 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Plus Query: 243 ggcaagctcgtcgacatcctcgcccaacgcttcgacgtcgtcgcccgctgccagggagga 302 ||||| ||||| |||||| | ||||||| ||| ||| |||| || || || ||||| ||| Sbjct: 277 ggcaaactcgttgacatcttagcccaacactttgacatcgttgctcgttgtcagggtgga 336 Query: 303 gctaatgctgggcacaccatatataattccgaggggaagaa 343 ||||||||||| ||||| ||||| ||||| ||||| ||||| Sbjct: 337 gctaatgctggacacactatatacaattcagagggaaagaa 377
>gb|AY018370.1| Oryza sativa microsatellite MRG0695 containing (AT)X15, closest to marker S10045, genomic sequence Length = 230 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 295 agggaggagctaatgctgggcacaccatatataattccgaggggaagaagtt 346 |||| ||||||||||||||||| || ||||||||||| ||||| |||||||| Sbjct: 69 agggtggagctaatgctgggcatactatatataattcagagggaaagaagtt 18
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 214 tcggcacgcagtggggcgacgagggaaagggcaagctcgtcgac 257 |||||||||||||||||||||| || ||||||||| |||||||| Sbjct: 736817 tcggcacgcagtggggcgacgaaggcaagggcaagatcgtcgac 736774
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 220 cgcagtggggcgacgagggaaagggcaagctcgtcgac 257 ||||||||||||||||||| ||||||||| |||||||| Sbjct: 3542915 cgcagtggggcgacgagggcaagggcaagttcgtcgac 3542878
>gb|AC143341.8| Medicago truncatula clone mth2-7a11, complete sequence Length = 111446 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 294 cagggaggagctaatgctgggcacaccatatataattccgaggggaagaagtt 346 ||||| ||||||||||||||||| ||||| |||||| | |||||||| ||||| Sbjct: 64595 cagggtggagctaatgctgggcataccatttataatgctgaggggaaaaagtt 64647
>gb|AY085133.1| Arabidopsis thaliana clone 13259 mRNA, complete sequence Length = 1663 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 243 ggcaagctcgtcgacatcctcgcccaacgcttcgacgtcgtcgcccgctgccagggagga 302 ||||| ||||| |||||| | ||||||| ||| ||| |||| || || || ||||| ||| Sbjct: 289 ggcaaactcgttgacatcttagcccaacactttgacatcgttgctcgttgtcagggtgga 348 Query: 303 gctaatgctgggcacaccatatataattccgaggggaagaa 343 ||||||||||| |||| ||||| ||||| ||||| ||||| Sbjct: 349 gctaatgctggacacattatatacaattcagagggaaagaa 389
>gb|AE005973.1| Caulobacter crescentus CB15 section 299 of 359 of the complete genome Length = 10123 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 222 cagtggggcgacgagggaaagggcaagctcgtcgac 257 ||||||||||||||||| ||||||||| |||||||| Sbjct: 9271 cagtggggcgacgagggcaagggcaagatcgtcgac 9236
>emb|CR734987.2|CNS0GTWA Tetraodon nigroviridis full-length cDNA Length = 1451 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 210 gtgctcggcacgcagtggggcgacgagggaaagggcaag 248 ||||||||| ||||||||||||||| ||| ||||||||| Sbjct: 74 gtgctcggcgcgcagtggggcgacgggggcaagggcaag 112
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 222 cagtggggcgacgagggaaagggcaagctcgtcga 256 |||||||||||||||||||| |||||| ||||||| Sbjct: 4540081 cagtggggcgacgagggaaaaggcaagatcgtcga 4540047
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 222 cagtggggcgacgagggaaagggcaagctcgtcga 256 ||||||||||||||||| ||||||||| ||||||| Sbjct: 3456776 cagtggggcgacgagggcaagggcaaggtcgtcga 3456742
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 222 cagtggggcgacgagggaaagggcaagctcgtcga 256 ||||||||||||||||| ||||||||| ||||||| Sbjct: 1464828 cagtggggcgacgagggcaagggcaagatcgtcga 1464862
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 220 cgcagtggggcgacgagggaaagggcaagctcgtcgac 257 |||| |||||||||||||| ||||||||| |||||||| Sbjct: 529111 cgcaatggggcgacgagggcaagggcaagatcgtcgac 529074
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 222 cagtggggcgacgagggaaagggcaagctcgtcgacatcctc 263 ||||||||||||||||| ||||||||| |||| ||| ||||| Sbjct: 4579755 cagtggggcgacgagggcaagggcaagatcgttgacgtcctc 4579796
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 216 ggcacgcagtggggcgacgagggaaagggcaagctcgtcgac 257 ||||| |||||||||||||| || ||||||||||| |||||| Sbjct: 2728400 ggcacccagtggggcgacgaaggcaagggcaagctggtcgac 2728359
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 216 ggcacgcagtggggcgacgagggaaagggcaagctcgtcgac 257 ||||| ||||||||||||||||| |||||||| || |||||| Sbjct: 2520447 ggcactcagtggggcgacgagggcaagggcaaactggtcgac 2520406
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 225 tggggcgacgagggaaagggcaagctcgtcgac 257 ||||||||||| |||||||||||| |||||||| Sbjct: 3204989 tggggcgacgaaggaaagggcaagatcgtcgac 3204957
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 225 tggggcgacgagggaaagggcaagctcgtcgac 257 ||||| |||||||||||||||||| |||||||| Sbjct: 1270274 tggggtgacgagggaaagggcaagatcgtcgac 1270306
>emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8 Length = 94378 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 295 agggaggagctaatgctgggcacaccatatataattccgaggggaagaa 343 |||| |||||||||||||| ||||| ||||| ||||| ||||| ||||| Sbjct: 73943 agggtggagctaatgctggacacactatatacaattcagagggaaagaa 73991
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 220 cgcagtggggcgacgagggaaagggcaag 248 ||||||||||||||||||| ||||||||| Sbjct: 216574 cgcagtggggcgacgagggcaagggcaag 216602
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 209 cgtgctcggcacgcagtggggcgacgagggaaagggcaagctcgtcgac 257 ||||||||| | ||||||||||| || |||||||||||| |||||||| Sbjct: 1885925 cgtgctcggtgcccagtggggcgatgaaggaaagggcaagatcgtcgac 1885877
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 220 cgcagtggggcgacgagggaaagggcaag 248 ||||||||||||||||||| ||||||||| Sbjct: 1673508 cgcagtggggcgacgagggcaagggcaag 1673480
>gb|AE010321.1| Methanopyrus kandleri AV19 section 20 of 157 of the complete genome Length = 10647 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 222 cagtggggcgacgagggaaagggcaagctcgt 253 ||||||||||||||||| ||||||||| |||| Sbjct: 5184 cagtggggcgacgagggcaagggcaagatcgt 5153
>ref|NM_001031521.1| Gallus gallus adenylosuccinate synthase (ADSS), mRNA Length = 2101 Score = 48.1 bits (24), Expect = 0.023 Identities = 36/40 (90%) Strand = Plus / Plus Query: 209 cgtgctcggcacgcagtggggcgacgagggaaagggcaag 248 |||||| ||| | ||||||||||||||||| ||||||||| Sbjct: 124 cgtgctgggcgcccagtggggcgacgagggcaagggcaag 163
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 222 cagtggggcgacgagggaaagggcaagctcgt 253 ||||||||||||||||| ||||||||| |||| Sbjct: 2097438 cagtggggcgacgaggggaagggcaagatcgt 2097407
>ref|XM_504530.1| Yarrowia lipolytica CLIB122, YALI0E28963g predicted mRNA Length = 1290 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Plus Query: 222 cagtggggcgacgagggaaagggcaagctcgt 253 |||||||||||||| |||||||| |||||||| Sbjct: 25 cagtggggcgacgaaggaaagggaaagctcgt 56
>emb|AJ720419.1| Gallus gallus mRNA for hypothetical protein, clone 17e23 Length = 2101 Score = 48.1 bits (24), Expect = 0.023 Identities = 36/40 (90%) Strand = Plus / Plus Query: 209 cgtgctcggcacgcagtggggcgacgagggaaagggcaag 248 |||||| ||| | ||||||||||||||||| ||||||||| Sbjct: 124 cgtgctgggcgcccagtggggcgacgagggcaagggcaag 163
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Plus Query: 225 tggggcgacgagggaaagggcaagctcgtcga 256 |||||||||||||| ||||||||| ||||||| Sbjct: 1516709 tggggcgacgaggggaagggcaagatcgtcga 1516740
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 222 cagtggggcgacgagggaaagggcaagctcgtcgac 257 ||||||||||| ||||| ||||||||| |||||||| Sbjct: 444895 cagtggggcgatgagggcaagggcaagatcgtcgac 444930
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 48.1 bits (24), Expect = 0.023 Identities = 36/40 (90%) Strand = Plus / Plus Query: 209 cgtgctcggcacgcagtggggcgacgagggaaagggcaag 248 |||| ||||| | |||||||||||||| |||||||||||| Sbjct: 3486295 cgtggtcggcgcccagtggggcgacgaaggaaagggcaag 3486334 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 tcgcccaacgcttcgacgtcg 282 ||||||||||||||||||||| Sbjct: 3062367 tcgcccaacgcttcgacgtcg 3062387
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Minus Query: 222 cagtggggcgacgagggaaagggcaagctcgtcgac 257 |||||||||||||| || ||||||||| |||||||| Sbjct: 7766924 cagtggggcgacgaagggaagggcaagatcgtcgac 7766889
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 214 tcggcacgcagtggggcgacgagggaaagggcaagctcgtcgac 257 ||||| |||| ||||||||||| || ||||||||| |||||||| Sbjct: 3110088 tcggctcgcaatggggcgacgaaggcaagggcaagatcgtcgac 3110045
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 222 cagtggggcgacgagggaaagggcaagctcgt 253 |||||||||||||| |||||||| |||||||| Sbjct: 3432802 cagtggggcgacgaaggaaagggaaagctcgt 3432771
>ref|XM_864796.1| PREDICTED: Bos taurus adenylosuccinate synthase, transcript variant 3 (ADSS), mRNA Length = 2443 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 210 gtgctcggcacgcagtggggcgacgagggaaaggg 244 ||||||||| |||||||||||||||| || ||||| Sbjct: 97 gtgctcggcgcgcagtggggcgacgaaggcaaggg 131
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 46.1 bits (23), Expect = 0.090 Identities = 35/39 (89%) Strand = Plus / Plus Query: 222 cagtggggcgacgagggaaagggcaagctcgtcgacatc 260 |||||||||||||| || ||||||||| |||| |||||| Sbjct: 3632480 cagtggggcgacgaaggcaagggcaaggtcgttgacatc 3632518
>ref|XM_754905.1| Ustilago maydis 521 hypothetical protein (UM03851.1) partial mRNA Length = 1320 Score = 46.1 bits (23), Expect = 0.090 Identities = 29/31 (93%) Strand = Plus / Plus Query: 222 cagtggggcgacgagggaaagggcaagctcg 252 |||||||| |||||||| ||||||||||||| Sbjct: 67 cagtggggtgacgagggcaagggcaagctcg 97
>emb|AL591793.1|SME591793 Sinorhizobium meliloti 1021 complete chromosome; segment 12/12 Length = 273785 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Plus Query: 229 gcgacgagggaaagggcaagctc 251 ||||||||||||||||||||||| Sbjct: 63000 gcgacgagggaaagggcaagctc 63022
>dbj|AK107684.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-B02, full insert sequence Length = 1508 Score = 46.1 bits (23), Expect = 0.090 Identities = 29/31 (93%) Strand = Plus / Plus Query: 222 cagtggggcgacgagggaaagggcaagctcg 252 ||||||||||||||||| || |||||||||| Sbjct: 143 cagtggggcgacgagggcaaaggcaagctcg 173
>ref|XM_537220.2| PREDICTED: Canis familiaris similar to Adenylosuccinate synthetase 2 (IMP--aspartate ligase 2) (AdSS 2) (AMPSase 2) (LOC480098), mRNA Length = 2756 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 210 gtgctcggcacgcagtggggcgacga 235 ||||||||| |||||||||||||||| Sbjct: 392 gtgctcggcgcgcagtggggcgacga 417
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 225 tggggcgacgagggaaagggcaagctcgt 253 |||||||||||||| ||||||||| |||| Sbjct: 1381362 tggggcgacgagggtaagggcaagatcgt 1381334
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 gcttcgacgtcgtcgcccgct 291 ||||||||||||||||||||| Sbjct: 2153124 gcttcgacgtcgtcgcccgct 2153104
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 225 tggggcgacgagggaaagggcaagctcgt 253 |||||||||||||| ||||||||| |||| Sbjct: 4332236 tggggcgacgaggggaagggcaagatcgt 4332208
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 gcttcgacgtcgtcgcccgct 291 ||||||||||||||||||||| Sbjct: 314752 gcttcgacgtcgtcgcccgct 314732
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 209 cgtgctcggcacgcagtggggcgacgagggaaagggcaagctcgtcgac 257 ||||||||| | |||||||| || || |||||||||||| |||||||| Sbjct: 462156 cgtgctcggtgcccagtggggtgatgaaggaaagggcaagatcgtcgac 462204
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 271 gcttcgacgtcgtcgcccgct 291 ||||||||||||||||||||| Sbjct: 2009893 gcttcgacgtcgtcgcccgct 2009913
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 216 ggcacgcagtggggcgacgagggaaagggcaagctcgtcga 256 |||||||||| ||||||||||| || |||||||| ||||| Sbjct: 2043063 ggcacgcagttcggcgacgagggcaaaggcaagctggtcga 2043023
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 255 gacatcctcgcccaacgcttcgacg 279 |||||| |||||||||||||||||| Sbjct: 1195964 gacatcgtcgcccaacgcttcgacg 1195940
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 222 cagtggggcgacgagggaaagggcaagctcgtcgac 257 |||||||||||||| ||||| || ||| |||||||| Sbjct: 161727 cagtggggcgacgaaggaaaaggtaagatcgtcgac 161762
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 agccaggtcgccggcgtgctcggc 218 |||||| ||||||||||||||||| Sbjct: 2285193 agccagatcgccggcgtgctcggc 2285170
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 222 cagtggggcgacgagggaaagggcaagctcgtcgac 257 |||||||||||||| || |||||||| |||||||| Sbjct: 3213560 cagtggggcgacgaaggtaagggcaaaatcgtcgac 3213525
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 209 cgtgctcggcacgcagtggggcgacgagggaaagggcaagctcgtcga 256 |||| ||||| | |||||||||||||| || ||||| ||| ||||||| Sbjct: 305707 cgtggtcggcgcccagtggggcgacgaaggcaagggaaagatcgtcga 305660
>emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02, complete sequence Length = 112404 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ccgtctccgccttcgtctcc 41 |||||||||||||||||||| Sbjct: 69792 ccgtctccgccttcgtctcc 69773
>emb|AJ493267.1|ABA493267 Acipenser baeri mRNA for lamin type B (lamB gene) Length = 3939 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ctgccagggaggagctaatg 309 |||||||||||||||||||| Sbjct: 944 ctgccagggaggagctaatg 963
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 209 cgtgctcggcacgcagtggggcgacgagggaaagggcaagctcgtcga 256 ||||||||| | ||||||||||| || || ||||||||| ||||||| Sbjct: 914132 cgtgctcggtgcccagtggggcgatgaaggcaagggcaagatcgtcga 914179
>gb|AC091076.7| Homo sapiens chromosome 8, clone RP11-53M11, complete sequence Length = 162374 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gtcgcccgctgccagggagg 301 |||||||||||||||||||| Sbjct: 138370 gtcgcccgctgccagggagg 138351
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 cagtggggcgacgagggaaa 241 |||||||||||||||||||| Sbjct: 5216862 cagtggggcgacgagggaaa 5216881
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 222 cagtggggcgacgagggaaagggcaagctcgtcgac 257 ||||||||||| || || ||||||||| |||||||| Sbjct: 3368485 cagtggggcgatgaaggcaagggcaagatcgtcgac 3368450
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ccgtctccgccttcgtctcc 41 |||||||||||||||||||| Sbjct: 20099888 ccgtctccgccttcgtctcc 20099869
>gb|AE004659.1| Pseudomonas aeruginosa PAO1, section 220 of 529 of the complete genome Length = 12411 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 cgccggcgtgctcggcacgc 222 |||||||||||||||||||| Sbjct: 10886 cgccggcgtgctcggcacgc 10905
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 cagtggggcgacgagggaaa 241 |||||||||||||||||||| Sbjct: 825888 cagtggggcgacgagggaaa 825869
>dbj|AK107531.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-G10, full insert sequence Length = 1622 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ccgtctccgccttcgtctcc 41 |||||||||||||||||||| Sbjct: 182 ccgtctccgccttcgtctcc 201
>emb|AJ340735.1|HSA340735 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DL1RS Length = 779 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gtggggcgacgagggaaagg 243 |||||||||||||||||||| Sbjct: 730 gtggggcgacgagggaaagg 711
>ref|NM_208114.1| Eremothecium gossypii ABL186Wp (ABL186W), mRNA Length = 1305 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 222 cagtggggcgacgagggaaagggcaagctcgt 253 |||||||| ||||| || |||||||||||||| Sbjct: 25 cagtggggtgacgaaggtaagggcaagctcgt 56
>gb|AY616097.1| Prototheca wickerhamii plastid adenylosuccinate synthetase mRNA, partial cds; nuclear gene for plastid product Length = 628 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 221 gcagtggggcgacgagggaaagggcaagctcgtcgacatcctcgccca 268 ||||||||| || || || ||||||||||| || |||||||| ||||| Sbjct: 278 gcagtggggtgatgaaggcaagggcaagctggtggacatcctggccca 325
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 209 cgtgctcggcacgcagtggggcgacgagggaaagggcaagctcgtcga 256 ||||||||| | ||||||||||| || || ||||||||| ||||||| Sbjct: 944324 cgtgctcggtgcccagtggggcgatgaaggcaagggcaagatcgtcga 944371
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 222 cagtggggcgacgagggaaagggcaagctcgt 253 |||||||| ||||| || |||||||||||||| Sbjct: 58583 cagtggggtgacgaaggtaagggcaagctcgt 58614 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,021,552 Number of Sequences: 3902068 Number of extensions: 2021552 Number of successful extensions: 40920 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38683 Number of HSP's gapped (non-prelim): 2237 length of query: 414 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 392 effective length of database: 17,147,199,772 effective search space: 6721702310624 effective search space used: 6721702310624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
