ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48g06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189610.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1581 Score = 369 bits (186), Expect = 5e-99 Identities = 284/316 (89%), Gaps = 3/316 (0%) Strand = Plus / Plus Query: 74 gagcttcaaggtgacgcggatctcggagggcgcggtgaagccggcgtcggagacgcccga 133 |||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||| || Sbjct: 85 gagcttcaaggtgacgaggatctcggagggggcggtgaagccggcggcggcgacgccgga 144 Query: 134 ccacacgctgccgctggcgtgggtggaccagtacccgacccaccgcggcctggtggagtc 193 | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 145 ggagacgctgccgctggcgtgggtggaccggtacccgacccaccgcgggctggtggagtc 204 Query: 194 gatgcacatcttccggtccggcgccgacgcggcccccggcgtgatccgcgaggcgctggg 253 |||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| | Sbjct: 205 gatgcacatcttccggtcgggcgccgacgcggccccgggcgtcatccgcgacgcgctcgc 264 Query: 254 caaggcgctggccttcttctacccgctggcggggcgcatcgtggagcagccggagaaggg 313 || |||||||| ||||||||||||||| || ||||||||||||| |||| ||| || Sbjct: 265 cagggcgctggtcttcttctacccgctcgccgggcgcatcgtgg---agcccgaggccgg 321 Query: 314 gtgccccgccatccgctgcaccgccgacggcgtctacttcgcggaggccgtcgccgagtg 373 || |||||||||||| |||||||||||||||||||||||||| ||||||| |||||| || Sbjct: 322 gtcccccgccatccggtgcaccgccgacggcgtctacttcgccgaggccgccgccgactg 381 Query: 374 cagcctggaggacgtc 389 |||||||||||||||| Sbjct: 382 cagcctggaggacgtc 397
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 369 bits (186), Expect = 5e-99 Identities = 284/316 (89%), Gaps = 3/316 (0%) Strand = Plus / Plus Query: 74 gagcttcaaggtgacgcggatctcggagggcgcggtgaagccggcgtcggagacgcccga 133 |||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||| || Sbjct: 4527323 gagcttcaaggtgacgaggatctcggagggggcggtgaagccggcggcggcgacgccgga 4527382 Query: 134 ccacacgctgccgctggcgtgggtggaccagtacccgacccaccgcggcctggtggagtc 193 | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 4527383 ggagacgctgccgctggcgtgggtggaccggtacccgacccaccgcgggctggtggagtc 4527442 Query: 194 gatgcacatcttccggtccggcgccgacgcggcccccggcgtgatccgcgaggcgctggg 253 |||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| | Sbjct: 4527443 gatgcacatcttccggtcgggcgccgacgcggccccgggcgtcatccgcgacgcgctcgc 4527502 Query: 254 caaggcgctggccttcttctacccgctggcggggcgcatcgtggagcagccggagaaggg 313 || |||||||| ||||||||||||||| || ||||||||||||| |||| ||| || Sbjct: 4527503 cagggcgctggtcttcttctacccgctcgccgggcgcatcgtgg---agcccgaggccgg 4527559 Query: 314 gtgccccgccatccgctgcaccgccgacggcgtctacttcgcggaggccgtcgccgagtg 373 || |||||||||||| |||||||||||||||||||||||||| ||||||| |||||| || Sbjct: 4527560 gtcccccgccatccggtgcaccgccgacggcgtctacttcgccgaggccgccgccgactg 4527619 Query: 374 cagcctggaggacgtc 389 |||||||||||||||| Sbjct: 4527620 cagcctggaggacgtc 4527635
>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510F03 Length = 149699 Score = 369 bits (186), Expect = 5e-99 Identities = 284/316 (89%), Gaps = 3/316 (0%) Strand = Plus / Plus Query: 74 gagcttcaaggtgacgcggatctcggagggcgcggtgaagccggcgtcggagacgcccga 133 |||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||| || Sbjct: 62010 gagcttcaaggtgacgaggatctcggagggggcggtgaagccggcggcggcgacgccgga 62069 Query: 134 ccacacgctgccgctggcgtgggtggaccagtacccgacccaccgcggcctggtggagtc 193 | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 62070 ggagacgctgccgctggcgtgggtggaccggtacccgacccaccgcgggctggtggagtc 62129 Query: 194 gatgcacatcttccggtccggcgccgacgcggcccccggcgtgatccgcgaggcgctggg 253 |||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| | Sbjct: 62130 gatgcacatcttccggtcgggcgccgacgcggccccgggcgtcatccgcgacgcgctcgc 62189 Query: 254 caaggcgctggccttcttctacccgctggcggggcgcatcgtggagcagccggagaaggg 313 || |||||||| ||||||||||||||| || ||||||||||||| |||| ||| || Sbjct: 62190 cagggcgctggtcttcttctacccgctcgccgggcgcatcgtgg---agcccgaggccgg 62246 Query: 314 gtgccccgccatccgctgcaccgccgacggcgtctacttcgcggaggccgtcgccgagtg 373 || |||||||||||| |||||||||||||||||||||||||| ||||||| |||||| || Sbjct: 62247 gtcccccgccatccggtgcaccgccgacggcgtctacttcgccgaggccgccgccgactg 62306 Query: 374 cagcctggaggacgtc 389 |||||||||||||||| Sbjct: 62307 cagcctggaggacgtc 62322
>dbj|AK120744.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004G13, full insert sequence Length = 1951 Score = 369 bits (186), Expect = 5e-99 Identities = 284/316 (89%), Gaps = 3/316 (0%) Strand = Plus / Plus Query: 74 gagcttcaaggtgacgcggatctcggagggcgcggtgaagccggcgtcggagacgcccga 133 |||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||| || Sbjct: 87 gagcttcaaggtgacgaggatctcggagggggcggtgaagccggcggcggcgacgccgga 146 Query: 134 ccacacgctgccgctggcgtgggtggaccagtacccgacccaccgcggcctggtggagtc 193 | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 147 ggagacgctgccgctggcgtgggtggaccggtacccgacccaccgcgggctggtggagtc 206 Query: 194 gatgcacatcttccggtccggcgccgacgcggcccccggcgtgatccgcgaggcgctggg 253 |||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| | Sbjct: 207 gatgcacatcttccggtcgggcgccgacgcggccccgggcgtcatccgcgacgcgctcgc 266 Query: 254 caaggcgctggccttcttctacccgctggcggggcgcatcgtggagcagccggagaaggg 313 || |||||||| ||||||||||||||| || ||||||||||||| |||| ||| || Sbjct: 267 cagggcgctggtcttcttctacccgctcgccgggcgcatcgtgg---agcccgaggccgg 323 Query: 314 gtgccccgccatccgctgcaccgccgacggcgtctacttcgcggaggccgtcgccgagtg 373 || |||||||||||| |||||||||||||||||||||||||| ||||||| |||||| || Sbjct: 324 gtcccccgccatccggtgcaccgccgacggcgtctacttcgccgaggccgccgccgactg 383 Query: 374 cagcctggaggacgtc 389 |||||||||||||||| Sbjct: 384 cagcctggaggacgtc 399
>dbj|AK107836.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-H05, full insert sequence Length = 987 Score = 369 bits (186), Expect = 5e-99 Identities = 284/316 (89%), Gaps = 3/316 (0%) Strand = Plus / Minus Query: 74 gagcttcaaggtgacgcggatctcggagggcgcggtgaagccggcgtcggagacgcccga 133 |||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||| || Sbjct: 649 gagcttcaaggtgacgaggatctcggagggggcggtgaagccggcggcggcgacgccgga 590 Query: 134 ccacacgctgccgctggcgtgggtggaccagtacccgacccaccgcggcctggtggagtc 193 | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 589 ggagacgctgccgctggcgtgggtggaccggtacccgacccaccgcgggctggtggagtc 530 Query: 194 gatgcacatcttccggtccggcgccgacgcggcccccggcgtgatccgcgaggcgctggg 253 |||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| | Sbjct: 529 gatgcacatcttccggtcgggcgccgacgcggccccgggcgtcatccgcgacgcgctcgc 470 Query: 254 caaggcgctggccttcttctacccgctggcggggcgcatcgtggagcagccggagaaggg 313 || |||||||| ||||||||||||||| || ||||||||||||| |||| ||| || Sbjct: 469 cagggcgctggtcttcttctacccgctcgccgggcgcatcgtgg---agcccgaggccgg 413 Query: 314 gtgccccgccatccgctgcaccgccgacggcgtctacttcgcggaggccgtcgccgagtg 373 || |||||||||||| |||||||||||||||||||||||||| ||||||| |||||| || Sbjct: 412 gtcccccgccatccggtgcaccgccgacggcgtctacttcgccgaggccgccgccgactg 353 Query: 374 cagcctggaggacgtc 389 |||||||||||||||| Sbjct: 352 cagcctggaggacgtc 337
>dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O23, full insert sequence Length = 1581 Score = 369 bits (186), Expect = 5e-99 Identities = 284/316 (89%), Gaps = 3/316 (0%) Strand = Plus / Plus Query: 74 gagcttcaaggtgacgcggatctcggagggcgcggtgaagccggcgtcggagacgcccga 133 |||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||| || Sbjct: 85 gagcttcaaggtgacgaggatctcggagggggcggtgaagccggcggcggcgacgccgga 144 Query: 134 ccacacgctgccgctggcgtgggtggaccagtacccgacccaccgcggcctggtggagtc 193 | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 145 ggagacgctgccgctggcgtgggtggaccggtacccgacccaccgcgggctggtggagtc 204 Query: 194 gatgcacatcttccggtccggcgccgacgcggcccccggcgtgatccgcgaggcgctggg 253 |||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| | Sbjct: 205 gatgcacatcttccggtcgggcgccgacgcggccccgggcgtcatccgcgacgcgctcgc 264 Query: 254 caaggcgctggccttcttctacccgctggcggggcgcatcgtggagcagccggagaaggg 313 || |||||||| ||||||||||||||| || ||||||||||||| |||| ||| || Sbjct: 265 cagggcgctggtcttcttctacccgctcgccgggcgcatcgtgg---agcccgaggccgg 321 Query: 314 gtgccccgccatccgctgcaccgccgacggcgtctacttcgcggaggccgtcgccgagtg 373 || |||||||||||| |||||||||||||||||||||||||| ||||||| |||||| || Sbjct: 322 gtcccccgccatccggtgcaccgccgacggcgtctacttcgccgaggccgccgccgactg 381 Query: 374 cagcctggaggacgtc 389 |||||||||||||||| Sbjct: 382 cagcctggaggacgtc 397
>dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P14, full insert sequence Length = 1593 Score = 369 bits (186), Expect = 5e-99 Identities = 284/316 (89%), Gaps = 3/316 (0%) Strand = Plus / Plus Query: 74 gagcttcaaggtgacgcggatctcggagggcgcggtgaagccggcgtcggagacgcccga 133 |||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||| || Sbjct: 88 gagcttcaaggtgacgaggatctcggagggggcggtgaagccggcggcggcgacgccgga 147 Query: 134 ccacacgctgccgctggcgtgggtggaccagtacccgacccaccgcggcctggtggagtc 193 | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 148 ggagacgctgccgctggcgtgggtggaccggtacccgacccaccgcgggctggtggagtc 207 Query: 194 gatgcacatcttccggtccggcgccgacgcggcccccggcgtgatccgcgaggcgctggg 253 |||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| | Sbjct: 208 gatgcacatcttccggtcgggcgccgacgcggccccgggcgtcatccgcgacgcgctcgc 267 Query: 254 caaggcgctggccttcttctacccgctggcggggcgcatcgtggagcagccggagaaggg 313 || |||||||| ||||||||||||||| || ||||||||||||| |||| ||| || Sbjct: 268 cagggcgctggtcttcttctacccgctcgccgggcgcatcgtgg---agcccgaggccgg 324 Query: 314 gtgccccgccatccgctgcaccgccgacggcgtctacttcgcggaggccgtcgccgagtg 373 || |||||||||||| |||||||||||||||||||||||||| ||||||| |||||| || Sbjct: 325 gtcccccgccatccggtgcaccgccgacggcgtctacttcgccgaggccgccgccgactg 384 Query: 374 cagcctggaggacgtc 389 |||||||||||||||| Sbjct: 385 cagcctggaggacgtc 400
>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence Length = 138186 Score = 363 bits (183), Expect = 3e-97 Identities = 279/311 (89%) Strand = Plus / Minus Query: 78 ttcaaggtgacgcggatctcggagggcgcggtgaagccggcgtcggagacgcccgaccac 137 ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| | Sbjct: 112382 ttcaaggtgacgcggatctcggagggccccgtgaagccggcgtcggcgacgcccgaggag 112323 Query: 138 acgctgccgctggcgtgggtggaccagtacccgacccaccgcggcctggtggagtcgatg 197 |||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||| Sbjct: 112322 acgctgccgctggcttgggtggaccggtacccgacgcaccgtggcctggtggagtcgatg 112263 Query: 198 cacatcttccggtccggcgccgacgcggcccccggcgtgatccgcgaggcgctgggcaag 257 |||||||||||||| ||||| | || |||||| | ||||||||| | |||||||| |||| Sbjct: 112262 cacatcttccggtcgggcgcgggcgaggccccggccgtgatccgggcggcgctggccaag 112203 Query: 258 gcgctggccttcttctacccgctggcggggcgcatcgtggagcagccggagaaggggtgc 317 ||||||||||||||||||||||||||||| |||||||||||| | | || |||| || Sbjct: 112202 gcgctggccttcttctacccgctggcgggccgcatcgtggagggggagcagccggggcgc 112143 Query: 318 cccgccatccgctgcaccgccgacggcgtctacttcgcggaggccgtcgccgagtgcagc 377 |||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct: 112142 cccgccatccgctgcaccgccgacggcgtctacttcgcggaggccgaggcggactgcagc 112083 Query: 378 ctggaggacgt 388 ||||||||||| Sbjct: 112082 ctggaggacgt 112072
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 3e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 138 acgctgccgctggcgtgggtggaccagtacccgacccaccgcggcctggtggagtcgatg 197 ||||||||||| || ||||| |||| |||||||| ||||||||||| || ||||| || Sbjct: 22997625 acgctgccgctcgcctgggtcgaccgctacccgacgcaccgcggcctcgtcgagtccgtg 22997566 Query: 198 cacatct 204 ||||||| Sbjct: 22997565 cacatct 22997559
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 54.0 bits (27), Expect = 3e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 138 acgctgccgctggcgtgggtggaccagtacccgacccaccgcggcctggtggagtcgatg 197 ||||||||||| || ||||| |||| |||||||| ||||||||||| || ||||| || Sbjct: 64169 acgctgccgctcgcctgggtcgaccgctacccgacgcaccgcggcctcgtcgagtccgtg 64110 Query: 198 cacatct 204 ||||||| Sbjct: 64109 cacatct 64103
>gb|AC072052.6| Homo sapiens BAC clone CTD-2195F21 from 7, complete sequence Length = 137074 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 243 gaggcgctgggcaaggcgctggccttctt 271 |||| |||||||||||||||||||||||| Sbjct: 57708 gaggagctgggcaaggcgctggccttctt 57680
>gb|BT009450.1| Triticum aestivum clone wlmk8.pk0021.e3:fis, full insert mRNA sequence Length = 1587 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 246 gcgctgggcaaggcgctggccttcttctacccgctggcggggcgc 290 ||||||| ||||||||||| |||||||||||||||| |||||| Sbjct: 242 gcgctggccaaggcgctggtgctcttctacccgctggccgggcgc 286
>ref|XM_935672.1| PREDICTED: Homo sapiens similar to glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1 (LOC641916), mRNA Length = 3972 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Plus Query: 243 gaggcgctgggcaaggcgctggccttctt 271 |||| |||||||||||||||||||||||| Sbjct: 3799 gaggagctgggcaaggcgctggccttctt 3827
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 46.1 bits (23), Expect = 0.084 Identities = 23/23 (100%) Strand = Plus / Minus Query: 242 cgaggcgctgggcaaggcgctgg 264 ||||||||||||||||||||||| Sbjct: 1425191 cgaggcgctgggcaaggcgctgg 1425169
>ref|XM_596272.2| PREDICTED: Bos taurus similar to glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1 (LOC518088), mRNA Length = 2424 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Plus Query: 243 gaggcgctgggcaaggcgctggccttcttc 272 |||| ||||||||| ||||||||||||||| Sbjct: 2251 gaggagctgggcaaagcgctggccttcttc 2280
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 gaggcgctgggcaaggcgctgg 264 |||||||||||||||||||||| Sbjct: 550460 gaggcgctgggcaaggcgctgg 550481
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 ccccgccatccgctgcaccgc 337 ||||||||||||||||||||| Sbjct: 1423081 ccccgccatccgctgcaccgc 1423101
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cgaggcgctgggcaaggcgct 262 ||||||||||||||||||||| Sbjct: 1563893 cgaggcgctgggcaaggcgct 1563913
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 gcgctgggcaaggcgctggcc 266 ||||||||||||||||||||| Sbjct: 4089228 gcgctgggcaaggcgctggcc 4089248
>dbj|AK143213.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130310E04 product:hypothetical protein, full insert sequence Length = 2109 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 tggcggggcgcatcgtggagc 300 ||||||||||||||||||||| Sbjct: 228 tggcggggcgcatcgtggagc 248
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 242 cgaggcgctgggcaaggcgctggcc 266 ||||||||| ||||||||||||||| Sbjct: 1031796 cgaggcgctcggcaaggcgctggcc 1031772
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 ggcgtgatccgcgaggcgctg 251 ||||||||||||||||||||| Sbjct: 2003188 ggcgtgatccgcgaggcgctg 2003208
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 248 gctgggcaaggcgctggccttcttc 272 ||||||||||||||||||| ||||| Sbjct: 3558866 gctgggcaaggcgctggccatcttc 3558890 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 cgcggtgaagccggcgtcgg 123 |||||||||||||||||||| Sbjct: 2965619 cgcggtgaagccggcgtcgg 2965600 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 cgcggtgaagccggcgtcgg 123 |||||||||||||||||||| Sbjct: 747838 cgcggtgaagccggcgtcgg 747819
>gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, complete sequence Length = 168481 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 tggcggggcgcatcgtggagc 300 ||||||||||||||||||||| Sbjct: 74870 tggcggggcgcatcgtggagc 74890
>ref|XM_480954.1| Oryza sativa (japonica cultivar-group), mRNA Length = 660 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cggcgccgacgcggcccccg 231 |||||||||||||||||||| Sbjct: 73 cggcgccgacgcggcccccg 54
>gb|AY641734.2| Camellia sinensis manganese superoxide dismutase mRNA, complete cds Length = 1095 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ggccatggcgtcgtcgagct 78 |||||||||||||||||||| Sbjct: 342 ggccatggcgtcgtcgagct 323
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence Length = 1085720 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ccgaccacacgctgccgctg 149 |||||||||||||||||||| Sbjct: 862267 ccgaccacacgctgccgctg 862286 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ccgaccacacgctgccgctg 149 |||||||||||||||||||| Sbjct: 830243 ccgaccacacgctgccgctg 830224
>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11, complete sequence Length = 135993 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ccatggcgtcgtcgagcttc 80 |||||||||||||||||||| Sbjct: 73585 ccatggcgtcgtcgagcttc 73604
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 gaggcgctgggcaaggcgct 262 |||||||||||||||||||| Sbjct: 811324 gaggcgctgggcaaggcgct 811343
>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 8/10 Length = 349136 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gatccgcgaggcgctgggca 255 |||||||||||||||||||| Sbjct: 305149 gatccgcgaggcgctgggca 305130
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 cgagcttcaaggtgacgcgg 92 |||||||||||||||||||| Sbjct: 113386 cgagcttcaaggtgacgcgg 113405
>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence Length = 150206 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 cggcgccgacgcggcccccggcgt 235 ||||||||||||||| |||||||| Sbjct: 35940 cggcgccgacgcggcgcccggcgt 35963
>gb|AF084831.1| Cinnamomum camphora Fe-SOD mRNA, partial cds Length = 764 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ggccatggcgtcgtcgagct 78 |||||||||||||||||||| Sbjct: 105 ggccatggcgtcgtcgagct 86
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 tcaaggtgacgcggatctcg 98 |||||||||||||||||||| Sbjct: 375497 tcaaggtgacgcggatctcg 375478
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gatccgcgaggcgctgggca 255 |||||||||||||||||||| Sbjct: 512579 gatccgcgaggcgctgggca 512560
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cgtgatccgcgaggcgctgg 252 |||||||||||||||||||| Sbjct: 1008527 cgtgatccgcgaggcgctgg 1008546
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 cggcgccgacgcggcccccggcgt 235 ||||||||||||||| |||||||| Sbjct: 34581819 cggcgccgacgcggcgcccggcgt 34581842
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ccatggcgtcgtcgagcttc 80 |||||||||||||||||||| Sbjct: 7614499 ccatggcgtcgtcgagcttc 7614518
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 ttctacccgctggcggggcg 289 |||||||||||||||||||| Sbjct: 15201367 ttctacccgctggcggggcg 15201348
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cggcgccgacgcggcccccg 231 |||||||||||||||||||| Sbjct: 8883044 cggcgccgacgcggcccccg 8883025
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gatccgcgaggcgctgggca 255 |||||||||||||||||||| Sbjct: 2776341 gatccgcgaggcgctgggca 2776322
>gb|AE004919.1| Pseudomonas aeruginosa PAO1, section 480 of 529 of the complete genome Length = 11267 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 aggcgctgggcaaggcgctggcct 267 ||||||||| |||||||||||||| Sbjct: 7785 aggcgctggacaaggcgctggcct 7762
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 gccgctggcgtgggtggacc 162 |||||||||||||||||||| Sbjct: 368151 gccgctggcgtgggtggacc 368170
>dbj|AP003859.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1033_B09 Length = 120648 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cggcgccgacgcggcccccg 231 |||||||||||||||||||| Sbjct: 66687 cggcgccgacgcggcccccg 66668
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1740_D06 Length = 187410 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 ttctacccgctggcggggcg 289 |||||||||||||||||||| Sbjct: 95343 ttctacccgctggcggggcg 95324
>dbj|AK101900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071B22, full insert sequence Length = 1707 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ttctacccgctggcggggcg 289 |||||||||||||||||||| Sbjct: 309 ttctacccgctggcggggcg 328
>dbj|AK072874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145I07, full insert sequence Length = 1997 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 212 cggcgccgacgcggcccccggcgt 235 ||||||||||||||| |||||||| Sbjct: 124 cggcgccgacgcggcgcccggcgt 101
>dbj|AK058559.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D08, full insert sequence Length = 1706 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ttctacccgctggcggggcg 289 |||||||||||||||||||| Sbjct: 308 ttctacccgctggcggggcg 327
>emb|AL732350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0101F08, complete sequence Length = 63897 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 cggcgccgacgcggcccccggcgt 235 ||||||||||||||| |||||||| Sbjct: 35203 cggcgccgacgcggcgcccggcgt 35226
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gatccgcgaggcgctgggca 255 |||||||||||||||||||| Sbjct: 524723 gatccgcgaggcgctgggca 524704
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 222 gcggcccccggcgtgatccgcgaggcgc 249 ||||||||||||||| ||||||||||| Sbjct: 913848 gcggcccccggcgtggcccgcgaggcgc 913875
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ccatggcgtcgtcgagcttc 80 |||||||||||||||||||| Sbjct: 7684586 ccatggcgtcgtcgagcttc 7684605 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,992,307 Number of Sequences: 3902068 Number of extensions: 1992307 Number of successful extensions: 47567 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45213 Number of HSP's gapped (non-prelim): 2354 length of query: 389 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 367 effective length of database: 17,147,199,772 effective search space: 6293022316324 effective search space used: 6293022316324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
