ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48g01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 256 bits (129), Expect = 5e-65 Identities = 222/253 (87%) Strand = Plus / Minus Query: 21 ccatggatggcctcacggcgccctcaccctcccactccggcgccacctcgggcggcggcg 80 ||||||| || ||| |||||||||| || |||||||||||||| || || |||||||||| Sbjct: 14041262 ccatggacgggctcgcggcgccctcgccgtcccactccggcgcgacgtccggcggcggcg 14041203 Query: 81 cctcccaccgcaagcggaagcttccgccgccatccctatctgatgccaccgccgacgagg 140 |||||||||||||||||||||| |||||| | ||||| || || |||||||||||||||| Sbjct: 14041202 cctcccaccgcaagcggaagctcccgccgtcgtccctctccgacgccaccgccgacgagg 14041143 Query: 141 acgacgacaccaccgcgccgtcgtcccccgccacctccctatcctcgccctcccgcccgt 200 ||||||||||||||||||||||||| || ||||||||| || |||||||| ||||||| Sbjct: 14041142 acgacgacaccaccgcgccgtcgtcgccgtccacctccccgtcgtcgccctcacgcccgt 14041083 Query: 201 cgtctccgtcctcctcccattctgacgaggatgacgacgactcccttaccaccttcaccg 260 | || |||||||||||||| || ||||| || |||||||||||||| ||||||||||| Sbjct: 14041082 cctccccgtcctcctcccactccgacgatgacgacgacgactccctccacaccttcaccg 14041023 Query: 261 ccgctcgcctcga 273 |||| |||||||| Sbjct: 14041022 ccgcccgcctcga 14041010 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 342 cggcggctcccaagcccgatgccgcgtccgcggcgtctggagacgggaaggaggac 397 |||| ||||||||||||||| |||| ||||| || | || ||||| ||||||||| Sbjct: 14040926 cggccgctcccaagcccgattccgcttccgctgccgccggcgacggcaaggaggac 14040871
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 256 bits (129), Expect = 5e-65 Identities = 222/253 (87%) Strand = Plus / Minus Query: 21 ccatggatggcctcacggcgccctcaccctcccactccggcgccacctcgggcggcggcg 80 ||||||| || ||| |||||||||| || |||||||||||||| || || |||||||||| Sbjct: 57391 ccatggacgggctcgcggcgccctcgccgtcccactccggcgcgacgtccggcggcggcg 57332 Query: 81 cctcccaccgcaagcggaagcttccgccgccatccctatctgatgccaccgccgacgagg 140 |||||||||||||||||||||| |||||| | ||||| || || |||||||||||||||| Sbjct: 57331 cctcccaccgcaagcggaagctcccgccgtcgtccctctccgacgccaccgccgacgagg 57272 Query: 141 acgacgacaccaccgcgccgtcgtcccccgccacctccctatcctcgccctcccgcccgt 200 ||||||||||||||||||||||||| || ||||||||| || |||||||| ||||||| Sbjct: 57271 acgacgacaccaccgcgccgtcgtcgccgtccacctccccgtcgtcgccctcacgcccgt 57212 Query: 201 cgtctccgtcctcctcccattctgacgaggatgacgacgactcccttaccaccttcaccg 260 | || |||||||||||||| || ||||| || |||||||||||||| ||||||||||| Sbjct: 57211 cctccccgtcctcctcccactccgacgatgacgacgacgactccctccacaccttcaccg 57152 Query: 261 ccgctcgcctcga 273 |||| |||||||| Sbjct: 57151 ccgcccgcctcga 57139 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 342 cggcggctcccaagcccgatgccgcgtccgcggcgtctggagacgggaaggaggac 397 |||| ||||||||||||||| |||| ||||| || | || ||||| ||||||||| Sbjct: 57055 cggccgctcccaagcccgattccgcttccgctgccgccggcgacggcaaggaggac 57000
>dbj|AK111779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078H10, full insert sequence Length = 1691 Score = 256 bits (129), Expect = 5e-65 Identities = 222/253 (87%) Strand = Plus / Plus Query: 21 ccatggatggcctcacggcgccctcaccctcccactccggcgccacctcgggcggcggcg 80 ||||||| || ||| |||||||||| || |||||||||||||| || || |||||||||| Sbjct: 114 ccatggacgggctcgcggcgccctcgccgtcccactccggcgcgacgtccggcggcggcg 173 Query: 81 cctcccaccgcaagcggaagcttccgccgccatccctatctgatgccaccgccgacgagg 140 |||||||||||||||||||||| |||||| | ||||| || || |||||||||||||||| Sbjct: 174 cctcccaccgcaagcggaagctcccgccgtcgtccctctccgacgccaccgccgacgagg 233 Query: 141 acgacgacaccaccgcgccgtcgtcccccgccacctccctatcctcgccctcccgcccgt 200 ||||||||||||||||||||||||| || ||||||||| || |||||||| ||||||| Sbjct: 234 acgacgacaccaccgcgccgtcgtcgccgtccacctccccgtcgtcgccctcacgcccgt 293 Query: 201 cgtctccgtcctcctcccattctgacgaggatgacgacgactcccttaccaccttcaccg 260 | || |||||||||||||| || ||||| || |||||||||||||| ||||||||||| Sbjct: 294 cctccccgtcctcctcccactccgacgatgacgacgacgactccctccacaccttcaccg 353 Query: 261 ccgctcgcctcga 273 |||| |||||||| Sbjct: 354 ccgcccgcctcga 366 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 342 cggcggctcccaagcccgatgccgcgtccgcggcgtctggagacgggaaggaggac 397 |||| ||||||||||||||| |||| ||||| || | || ||||| ||||||||| Sbjct: 450 cggccgctcccaagcccgattccgcttccgctgccgccggcgacggcaaggaggac 505
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 256 bits (129), Expect = 5e-65 Identities = 222/253 (87%) Strand = Plus / Minus Query: 21 ccatggatggcctcacggcgccctcaccctcccactccggcgccacctcgggcggcggcg 80 ||||||| || ||| |||||||||| || |||||||||||||| || || |||||||||| Sbjct: 14049504 ccatggacgggctcgcggcgccctcgccgtcccactccggcgcgacgtccggcggcggcg 14049445 Query: 81 cctcccaccgcaagcggaagcttccgccgccatccctatctgatgccaccgccgacgagg 140 |||||||||||||||||||||| |||||| | ||||| || || |||||||||||||||| Sbjct: 14049444 cctcccaccgcaagcggaagctcccgccgtcgtccctctccgacgccaccgccgacgagg 14049385 Query: 141 acgacgacaccaccgcgccgtcgtcccccgccacctccctatcctcgccctcccgcccgt 200 ||||||||||||||||||||||||| || ||||||||| || |||||||| ||||||| Sbjct: 14049384 acgacgacaccaccgcgccgtcgtcgccgtccacctccccgtcgtcgccctcacgcccgt 14049325 Query: 201 cgtctccgtcctcctcccattctgacgaggatgacgacgactcccttaccaccttcaccg 260 | || |||||||||||||| || ||||| || |||||||||||||| ||||||||||| Sbjct: 14049324 cctccccgtcctcctcccactccgacgatgacgacgacgactccctccacaccttcaccg 14049265 Query: 261 ccgctcgcctcga 273 |||| |||||||| Sbjct: 14049264 ccgcccgcctcga 14049252 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 342 cggcggctcccaagcccgatgccgcgtccgcggcgtctggagacgggaaggaggac 397 |||| ||||||||||||||| |||| ||||| || | || ||||| ||||||||| Sbjct: 14049168 cggccgctcccaagcccgattccgcttccgctgccgccggcgacggcaaggaggac 14049113
>ref|NM_196493.1| Oryza sativa (japonica cultivar-group) contains similarity to histone acetyltransferase GCN5 (OSJNBa0032I20.6), mRNA Length = 1752 Score = 252 bits (127), Expect = 8e-64 Identities = 220/251 (87%) Strand = Plus / Plus Query: 23 atggatggcctcacggcgccctcaccctcccactccggcgccacctcgggcggcggcgcc 82 ||||| || ||| |||||||||| || |||||||||||||| || || |||||||||||| Sbjct: 1 atggacgggctcgcggcgccctcgccgtcccactccggcgcgacgtccggcggcggcgcc 60 Query: 83 tcccaccgcaagcggaagcttccgccgccatccctatctgatgccaccgccgacgaggac 142 |||||||||||||||||||| |||||| | ||||| || || |||||||||||||||||| Sbjct: 61 tcccaccgcaagcggaagctcccgccgtcgtccctctccgacgccaccgccgacgaggac 120 Query: 143 gacgacaccaccgcgccgtcgtcccccgccacctccctatcctcgccctcccgcccgtcg 202 ||||||||||||||||||||||| || ||||||||| || |||||||| |||||||| Sbjct: 121 gacgacaccaccgcgccgtcgtcgccgtccacctccccgtcgtcgccctcacgcccgtcc 180 Query: 203 tctccgtcctcctcccattctgacgaggatgacgacgactcccttaccaccttcaccgcc 262 || |||||||||||||| || ||||| || |||||||||||||| ||||||||||||| Sbjct: 181 tccccgtcctcctcccactccgacgatgacgacgacgactccctccacaccttcaccgcc 240 Query: 263 gctcgcctcga 273 || |||||||| Sbjct: 241 gcccgcctcga 251 Score = 40.1 bits (20), Expect = 5.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 342 cggcggctcccaagcccgatgccgcgtccgcggcgtctggagacgggaaggaggac 397 |||| ||||||||||||||| |||| ||||| || | || ||||| ||||||||| Sbjct: 335 cggccgctcccaagcccgattccgcttccgctgccgccggcgacggcaaggaggac 390
>gb|AF440227.1| Zea mays histone acetyl transferase (HAC104) mRNA, complete cds Length = 1863 Score = 186 bits (94), Expect = 4e-44 Identities = 190/222 (85%) Strand = Plus / Plus Query: 22 catggatggcctcacggcgccctcaccctcccactccggcgccacctcgggcggcggcgc 81 |||||| |||||| |||||| || || |||||||||||||||||||| |||||||| || Sbjct: 69 catggacggcctcgtggcgccgtcgccatcccactccggcgccacctccggcggcggggc 128 Query: 82 ctcccaccgcaagcggaagcttccgccgccatccctatctgatgccaccgccgacgagga 141 ||||||||||||||||||||| |||||| | || || || || ||||||| ||||||||| Sbjct: 129 ctcccaccgcaagcggaagctcccgccgtcgtcgctctccgacgccaccggcgacgagga 188 Query: 142 cgacgacaccaccgcgccgtcgtcccccgccacctccctatcctcgccctcccgcccgtc 201 ||||||||||||||| ||||| |||||| |||| ||| |||||||||||| |||||||| Sbjct: 189 cgacgacaccaccgctccgtcatccccctccacggccccatcctcgccctctcgcccgtc 248 Query: 202 gtctccgtcctcctcccattctgacgaggatgacgacgactc 243 ||||| || || || || || ||||| || ||||||||||| Sbjct: 249 atctccatcttcttcgcactccgacgatgacgacgacgactc 290
>emb|AJ428542.2|ZMA428542 Zea mays GCN5 gene for histone acetyltransferase, complete cds Length = 9819 Score = 186 bits (94), Expect = 4e-44 Identities = 190/222 (85%) Strand = Plus / Plus Query: 22 catggatggcctcacggcgccctcaccctcccactccggcgccacctcgggcggcggcgc 81 |||||| |||||| |||||| || || |||||||||||||||||||| |||||||| || Sbjct: 2834 catggacggcctcgtggcgccgtcgccatcccactccggcgccacctccggcggcggggc 2893 Query: 82 ctcccaccgcaagcggaagcttccgccgccatccctatctgatgccaccgccgacgagga 141 ||||||||||||||||||||| |||||| | || || || || ||||||| ||||||||| Sbjct: 2894 ctcccaccgcaagcggaagctcccgccgtcgtcgctctccgacgccaccggcgacgagga 2953 Query: 142 cgacgacaccaccgcgccgtcgtcccccgccacctccctatcctcgccctcccgcccgtc 201 ||||||||||||||| ||||| |||||| |||| ||| |||||||||||| |||||||| Sbjct: 2954 cgacgacaccaccgctccgtcatccccctccacggccccatcctcgccctctcgcccgtc 3013 Query: 202 gtctccgtcctcctcccattctgacgaggatgacgacgactc 243 ||||| || || || || || ||||| || ||||||||||| Sbjct: 3014 atctccatcttcttcgcactccgacgatgacgacgacgactc 3055
>emb|AJ428540.1|ZMA428540 Zea mays mRNA for GCN5 protein Length = 1919 Score = 186 bits (94), Expect = 4e-44 Identities = 190/222 (85%) Strand = Plus / Plus Query: 22 catggatggcctcacggcgccctcaccctcccactccggcgccacctcgggcggcggcgc 81 |||||| |||||| |||||| || || |||||||||||||||||||| |||||||| || Sbjct: 83 catggacggcctcgtggcgccgtcgccatcccactccggcgccacctccggcggcggggc 142 Query: 82 ctcccaccgcaagcggaagcttccgccgccatccctatctgatgccaccgccgacgagga 141 ||||||||||||||||||||| |||||| | || || || || ||||||| ||||||||| Sbjct: 143 ctcccaccgcaagcggaagctcccgccgtcgtcgctctccgacgccaccggcgacgagga 202 Query: 142 cgacgacaccaccgcgccgtcgtcccccgccacctccctatcctcgccctcccgcccgtc 201 ||||||||||||||| ||||| |||||| |||| ||| |||||||||||| |||||||| Sbjct: 203 cgacgacaccaccgctccgtcatccccctccacggccccatcctcgccctctcgcccgtc 262 Query: 202 gtctccgtcctcctcccattctgacgaggatgacgacgactc 243 ||||| || || || || || ||||| || ||||||||||| Sbjct: 263 atctccatcttcttcgcactccgacgatgacgacgacgactc 304
>ref|XM_541127.2| PREDICTED: Canis familiaris similar to Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2, transcript variant 1 (LOC484010), mRNA Length = 1866 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Plus Query: 55 ctccggcgccacctcgggcggcggcgc 81 |||||||| |||||||||||||||||| Sbjct: 591 ctccggcggcacctcgggcggcggcgc 617
>ref|XM_855740.1| PREDICTED: Canis familiaris similar to Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2, transcript variant 3 (LOC484010), mRNA Length = 1921 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Plus Query: 55 ctccggcgccacctcgggcggcggcgc 81 |||||||| |||||||||||||||||| Sbjct: 646 ctccggcggcacctcgggcggcggcgc 672
>ref|XM_845065.1| PREDICTED: Canis familiaris similar to Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2, transcript variant 2 (LOC484010), mRNA Length = 2048 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Plus Query: 55 ctccggcgccacctcgggcggcggcgc 81 |||||||| |||||||||||||||||| Sbjct: 773 ctccggcggcacctcgggcggcggcgc 799
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 acgacaccaccgcgccgtcgtc 165 |||||||||||||||||||||| Sbjct: 3736243 acgacaccaccgcgccgtcgtc 3736222
>gb|AY190952.1| Drosophila virilis clone DVIF01_45_G15 (D1418) genomic sequence Length = 39016 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 129 ccgccgacgaggacgacgacaccacc 154 |||||||||| ||||||||||||||| Sbjct: 25766 ccgccgacgacgacgacgacaccacc 25791
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 acgacaccaccgcgccgtcgtc 165 |||||||||||||||||||||| Sbjct: 276349 acgacaccaccgcgccgtcgtc 276328
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 acgacaccaccgcgccgtcgtc 165 |||||||||||||||||||||| Sbjct: 254546 acgacaccaccgcgccgtcgtc 254525
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 ctccggcgccacctcgggcggcggcg 80 |||||||| ||||||||||||||||| Sbjct: 61251 ctccggcggcacctcgggcggcggcg 61276
>gb|AY186999.1| Drosophila virilis unc-5 (unc-5) gene, partial cds; and ap (ap), vlc (vlc), CG17337 (CG17337), and CG13533 (CG13533) genes, complete cds Length = 83253 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 129 ccgccgacgaggacgacgacaccacc 154 |||||||||| ||||||||||||||| Sbjct: 35696 ccgccgacgacgacgacgacaccacc 35721
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 ccggcgccacctcgggcggcg 77 ||||||||||||||||||||| Sbjct: 916141 ccggcgccacctcgggcggcg 916121
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 acctcgggcggcggcgcctcc 85 ||||||||||||||||||||| Sbjct: 101911 acctcgggcggcggcgcctcc 101891
>ref|XM_812823.1| Trypanosoma cruzi strain CL Brener Golgi/lysosome glycoprotein (Tc00.1047053511391.180) partial mRNA Length = 1848 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 ccgactcttcatccgcatctgcggt 336 ||||||||||| ||||||||||||| Sbjct: 130 ccgactcttcacccgcatctgcggt 106
>ref|XM_814956.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506679.220) partial mRNA Length = 2850 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 200 tcgtctccgtcctcctcccattctg 224 |||||||| |||||||||||||||| Sbjct: 1877 tcgtctccttcctcctcccattctg 1853
>gb|AE004224.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 132 of 251 of the complete chromosome Length = 10646 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 6602 tcccttaccaccttcaccgcc 6582
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 ccttcaccgccgctcgcctcg 272 ||||||||||||||||||||| Sbjct: 3409066 ccttcaccgccgctcgcctcg 3409086
>gb|AF416590.1|AF416590 Vibrio phage CTX core region Cep (cep), OrfU (orfU), Ace (ace), and Zot (zot) genes, complete cds and Vibrio cholerae serogroup 0139, partial sequence Length = 5728 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 765 tcccttaccaccttcaccgcc 785
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 acctcgggcggcggcgcctcc 85 ||||||||||||||||||||| Sbjct: 19099093 acctcgggcggcggcgcctcc 19099073 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccgccgacgaggacgacgac 148 |||||||||||||||||||| Sbjct: 22223484 ccgccgacgaggacgacgac 22223503
>gb|AF238354.1|AF238354 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238353.1|AF238353 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238352.1|AF238352 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238351.1|AF238351 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238350.1|AF238350 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238347.1|AF238347 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238346.1|AF238346 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238345.1|AF238345 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238343.1|AF238343 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238342.1|AF238342 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238341.1|AF238341 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238340.1|AF238340 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238339.1|AF238339 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>gb|AF238338.1|AF238338 Filamentous phage CTXphi OrfU receptor-binding protein gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 210 tcccttaccaccttcaccgcc 230
>emb|Z22569.1|VCORFUACE V.cholerae OrfU and Ace genes Length = 1651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 481 tcccttaccaccttcaccgcc 501
>gb|AF207858.1|AF207858 Vibrio mimicus strain PT5 OrfU (orfU) gene, partial cds Length = 985 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 231 tcccttaccaccttcaccgcc 251
>gb|AF220606.1|AF220606 Vibrio cholerae RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), OrfU (orfU), Ace (ace), and Zot (zot) genes, complete cds Length = 5708 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 tcccttaccaccttcaccgcc 262 ||||||||||||||||||||| Sbjct: 3370 tcccttaccaccttcaccgcc 3390
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 acctcgggcggcggcgcctcc 85 ||||||||||||||||||||| Sbjct: 19257742 acctcgggcggcggcgcctcc 19257722 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccgccgacgaggacgacgac 148 |||||||||||||||||||| Sbjct: 22533395 ccgccgacgaggacgacgac 22533414
>ref|XM_470960.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 954 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccgccgacgaggacgacgac 148 |||||||||||||||||||| Sbjct: 140 ccgccgacgaggacgacgac 121
>ref|NM_187584.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gccaccgccgacgaggacgacgac 148 |||||||||| ||||||||||||| Sbjct: 742 gccaccgccggcgaggacgacgac 765
>ref|NM_187707.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1344 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gatgccaccgccgacgagga 141 |||||||||||||||||||| Sbjct: 1279 gatgccaccgccgacgagga 1298
>gb|AE014850.1| Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence Length = 250713 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tgacgaggatgacgacgact 242 |||||||||||||||||||| Sbjct: 228752 tgacgaggatgacgacgact 228771
>gb|AY024260.1| Oryza sativa microsatellite MRG6585 containing (TCTT)X6, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccgccgacgaggacgacgac 148 |||||||||||||||||||| Sbjct: 37 ccgccgacgaggacgacgac 18
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 gccgtcgtcccccgccacctccct 180 ||||||||||| |||||||||||| Sbjct: 18519825 gccgtcgtcccgcgccacctccct 18519848 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 gccaccgccgacgaggacgacgac 148 |||||||||| ||||||||||||| Sbjct: 1509309 gccaccgccggcgaggacgacgac 1509286
>emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete chromosome; segment 8/12 Length = 294800 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 caccgccgacgaggacgacg 146 |||||||||||||||||||| Sbjct: 54089 caccgccgacgaggacgacg 54070
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034P08, complete sequence Length = 173088 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccgccgacgaggacgacgac 148 |||||||||||||||||||| Sbjct: 117814 ccgccgacgaggacgacgac 117795
>gb|AC138364.8| Mus musculus chromosome 7, clone RP23-243D10, complete sequence Length = 199717 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 cgacgaggacgacgacacca 152 |||||||||||||||||||| Sbjct: 116098 cgacgaggacgacgacacca 116117
>emb|X78142.1|OSABTUB1 O.sativa (Arborio) Beta Tubulin mRNA, clone OSTB-34 Length = 1516 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gatgccaccgccgacgagga 141 |||||||||||||||||||| Sbjct: 1105 gatgccaccgccgacgagga 1124
>emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genome; segment 3/16 Length = 349260 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gacgaggatgacgacgactc 243 |||||||||||||||||||| Sbjct: 301535 gacgaggatgacgacgactc 301516
>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15, complete sequence Length = 144778 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccgccgacgaggacgacgac 148 |||||||||||||||||||| Sbjct: 15752 ccgccgacgaggacgacgac 15771
>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07, complete sequence Length = 117612 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 gccaccgccgacgaggacgacgac 148 |||||||||| ||||||||||||| Sbjct: 46482 gccaccgccggcgaggacgacgac 46459
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ccggcgccacctcgggcggc 76 |||||||||||||||||||| Sbjct: 1197491 ccggcgccacctcgggcggc 1197510
>gb|AF421537.1| Crypthecodinium cohnii beta-tubulin mRNA, complete cds Length = 1717 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gatgccaccgccgacgagga 141 |||||||||||||||||||| Sbjct: 1347 gatgccaccgccgacgagga 1366
>gb|AC093180.12| Oryza sativa chromosome 3 BAC OJ1004_D04 genomic sequence, complete sequence Length = 158170 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 gccgtcgtcccccgccacctccct 180 ||||||||||| |||||||||||| Sbjct: 117852 gccgtcgtcccgcgccacctccct 117829
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 ccggcgccacctcgggcggc 76 |||||||||||||||||||| Sbjct: 2447915 ccggcgccacctcgggcggc 2447896
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccgccgacgaggacgacgac 148 |||||||||||||||||||| Sbjct: 219932 ccgccgacgaggacgacgac 219951
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tgacgaggatgacgacgact 242 |||||||||||||||||||| Sbjct: 5547675 tgacgaggatgacgacgact 5547694
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 gccgtcgtcccccgccacctccct 180 ||||||||||| |||||||||||| Sbjct: 18513866 gccgtcgtcccgcgccacctccct 18513889 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 gccaccgccgacgaggacgacgac 148 |||||||||| ||||||||||||| Sbjct: 1509307 gccaccgccggcgaggacgacgac 1509284
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gatgccaccgccgacgagga 141 |||||||||||||||||||| Sbjct: 10097824 gatgccaccgccgacgagga 10097805
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 cgacaccaccgcgccgtcgtcccc 168 |||||||||||||||| ||||||| Sbjct: 1765181 cgacaccaccgcgccgccgtcccc 1765158
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0581F09 Length = 154248 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gatgccaccgccgacgagga 141 |||||||||||||||||||| Sbjct: 45293 gatgccaccgccgacgagga 45274
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 cttcaccgccgctcgcctcg 272 |||||||||||||||||||| Sbjct: 3903546 cttcaccgccgctcgcctcg 3903527
>dbj|AP005499.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0412D08 Length = 150188 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tgacgaggatgacgacgact 242 |||||||||||||||||||| Sbjct: 3051 tgacgaggatgacgacgact 3070
>dbj|AP004746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0035F08 Length = 167446 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tgacgaggatgacgacgact 242 |||||||||||||||||||| Sbjct: 73903 tgacgaggatgacgacgact 73922
>dbj|AK122127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132F08, full insert sequence Length = 1771 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gatgccaccgccgacgagga 141 |||||||||||||||||||| Sbjct: 1375 gatgccaccgccgacgagga 1394
>dbj|AK073274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B20, full insert sequence Length = 1504 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccgccgacgaggacgacgac 148 |||||||||||||||||||| Sbjct: 414 ccgccgacgaggacgacgac 395
>dbj|AK066103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051M22, full insert sequence Length = 1159 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccgccgacgaggacgacgac 148 |||||||||||||||||||| Sbjct: 230 ccgccgacgaggacgacgac 211
>gb|AC171018.2| Gallus gallus BAC clone CH261-11F14 from chromosome ul, complete sequence Length = 216886 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 ctccgtcctcctcccattct 223 |||||||||||||||||||| Sbjct: 149658 ctccgtcctcctcccattct 149677
>dbj|AK065323.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P20, full insert sequence Length = 1712 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gatgccaccgccgacgagga 141 |||||||||||||||||||| Sbjct: 1375 gatgccaccgccgacgagga 1394
>dbj|AK061755.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A02, full insert sequence Length = 1250 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccgccgacgaggacgacgac 148 |||||||||||||||||||| Sbjct: 170 ccgccgacgaggacgacgac 151
>gb|AY104328.1| Zea mays PCO078649 mRNA sequence Length = 1252 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ctgacgaggatgacgacgac 241 |||||||||||||||||||| Sbjct: 307 ctgacgaggatgacgacgac 288
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 ccgacgaggacgacgacacc 151 |||||||||||||||||||| Sbjct: 956584 ccgacgaggacgacgacacc 956565
>gb|U81995.1|DMU81995 Drosophila melanogaster glutathione reductase mRNA, complete cds Length = 1992 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gcatcctcctccgccaggcc 303 |||||||||||||||||||| Sbjct: 1309 gcatcctcctccgccaggcc 1290
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 caccaccgcgccgtcgtccc 167 |||||||||||||||||||| Sbjct: 1521354 caccaccgcgccgtcgtccc 1521335
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gatgccaccgccgacgagga 141 |||||||||||||||||||| Sbjct: 22423 gatgccaccgccgacgagga 22404 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,893,611 Number of Sequences: 3902068 Number of extensions: 2893611 Number of successful extensions: 71456 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69334 Number of HSP's gapped (non-prelim): 2122 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
