>PIN5_ORYSA (Q5VQY3) Probable auxin efflux carrier component 5 (OsPIN5)|
          Length = 426

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 299 SLAEAIAMTGLLARPAWETRKRRAEGAKASAA 204
           +L +A+ + GL+A   WE  + R  GAKA AA
Sbjct: 76  TLQKAVLLLGLMAWALWERSRARGAGAKAKAA 107

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 40  TSQQPPCRERPTSRPPLTNPAPGPGSRAAMAG 135
           +SQ  P RERP +RP    P PGP       G
Sbjct: 184 SSQPAPERERPAARPGPGGPRPGPAQGGPRPG 215

>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2|
          Length = 902

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 13/125 (10%)
 Frame = +1

Query: 1   RKEEGEIRAQLR*TSQQPPCRERPTSRPPLTNPAPGPGSRAAMAGTVXXXXXXXXXXXXX 180
           RK E E + +     +QP    RP +  P   PAP PG+ AA  GT              
Sbjct: 162 RKAETEAKKRFG-EGEQPASAARPATAAPAA-PAPRPGAPAARPGTTTTRPGTTTARPAT 219

Query: 181 XXSQ-----SLRSAALAFAP----SARRFRVSHAGRARSPVIAMASAKEG----NGAVTK 321
             +Q     + R  A+A  P    + R+ R    G AR       + K G     G +T 
Sbjct: 220 TTAQRPGAPAGRGPAVAAEPDEDEAPRQIRRGPGGAARPAPPPKTTHKPGPQKERGRLTV 279

Query: 322 RTTLH 336
            T L+
Sbjct: 280 VTALN 284

>TRI31_HUMAN (Q9BZY9) Tripartite motif protein 31|
          Length = 425

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 220 APSARRFRVSHAGRARSPVIAMASAKE--GNGAVTKRTTLHDL 342
           APS   FR S AG+   PV  +AS  E  G GA ++ T   D+
Sbjct: 356 APSHSLFRASSAGKVTFPVCLLASYDEISGQGASSQDTKTFDV 398

>VE2_HPV13 (Q02263) Regulatory protein E2|
          Length = 377

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 229 ARRFRVSHAGRARSPVIAMASAKEGNGAVTKRTTLHDLYEQQ-GQSPW 369
           AR+  +SH G    P + ++ AK G+ A+  + TL  L E + G  PW
Sbjct: 46  ARQMGLSHIGLQVVPPLTVSQAK-GHEAIEMQMTLETLLESEFGMEPW 92

>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2|
          Length = 306

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 35/127 (27%), Positives = 47/127 (37%), Gaps = 4/127 (3%)
 Frame = +1

Query: 1   RKEEGEIRAQLR*TSQQPPCRERPTS-RPPLTNPAPGPGSRAAMAGTVXXXXXXXXXXXX 177
           +KE G  R + R    +P  R  P   R P    A GP SRA  + T             
Sbjct: 124 QKEPGRQRLEPR---ARPSGRTPPAQLRSPWPMTAAGPASRARASET---------GSTA 171

Query: 178 XXXSQSLRSAALAFAPSARRFRVSHAGRARSPVIAMASAKEG-NGAVTKRTTLHDLYEQQ 354
               +     A A APSA R   +  GR+ S     A A     GA+T+        +++
Sbjct: 172 SCAGRWRTCCAAAAAPSAARSASARTGRSTSSCARAARAPSATEGALTRTPAPRRPLQRR 231

Query: 355 --GQSPW 369
             G  PW
Sbjct: 232 RPGTGPW 238

>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 40  TSQQPPCRERPTSRPPLTNPAPGPG 114
           +S  PP    P + PP T   PGPG
Sbjct: 118 SSAPPPAVSAPPANPPTTGAPPGPG 142

>FA62A_PONPY (Q5RAG2) Protein FAM62A|
          Length = 1104

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 43  SQQPPCRERPTSRPPLTNPAPGPGSRAAMAG 135
           + QP     PT +PP  +  P PGS    AG
Sbjct: 14  TDQPSAPSDPTGQPPAAHAKPDPGSGGQPAG 44


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,261,417
Number of Sequences: 219361
Number of extensions: 643379
Number of successful extensions: 3599
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3578
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)