ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48f10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190079.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 477 Score = 71.9 bits (36), Expect = 1e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 288 cgctctccccggacataatgccgctgctcccgtccccggg 327 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 203 cgctctcgccggacataatgccgctgctcccgtccccggg 242
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 71.9 bits (36), Expect = 1e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 288 cgctctccccggacataatgccgctgctcccgtccccggg 327 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 41172121 cgctctcgccggacataatgccgctgctcccgtccccggg 41172160 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgcgccgcgtgcgcgtgcgc 162 |||||||||||||||||||| Sbjct: 10740788 tgcgccgcgtgcgcgtgcgc 10740807
>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504E02 Length = 137468 Score = 71.9 bits (36), Expect = 1e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 288 cgctctccccggacataatgccgctgctcccgtccccggg 327 ||||||| |||||||||||||||||||||||||||||||| Sbjct: 69176 cgctctcgccggacataatgccgctgctcccgtccccggg 69215
>gb|BC056275.1| Danio rerio zgc:65772, mRNA (cDNA clone MGC:65772 IMAGE:6789082), complete cds Length = 1154 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 cacacgcacacacacatcttca 27 |||||||||||||||||||||| Sbjct: 943 cacacgcacacacacatcttca 922
>ref|NM_200533.2| Danio rerio zgc:65772 (zgc:65772), mRNA Length = 1270 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 cacacgcacacacacatcttca 27 |||||||||||||||||||||| Sbjct: 959 cacacgcacacacacatcttca 938
>gb|BC066442.1| Danio rerio zgc:65772, mRNA (cDNA clone MGC:77372 IMAGE:6969016), complete cds Length = 1270 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 cacacgcacacacacatcttca 27 |||||||||||||||||||||| Sbjct: 959 cacacgcacacacacatcttca 938
>emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on chromosome X, complete sequence Length = 171593 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttca 27 |||||||||||||||||||||| Sbjct: 6331 cacacgcacacacacatcttca 6352
>emb|BX005173.7| Mouse DNA sequence from clone RP23-232O7 on chromosome X, complete sequence Length = 24999 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 cacacgcacacacacatcttca 27 |||||||||||||||||||||| Sbjct: 18669 cacacgcacacacacatcttca 18648
>ref|XM_542784.2| PREDICTED: Canis familiaris similar to ubiquitin-activating enzyme E1-domain containing 1 isoform 1 (LOC485664), mRNA Length = 1437 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 219 acccgctgctgcagccgcggcacgg 243 |||||||||||||||||| |||||| Sbjct: 203 acccgctgctgcagccgctgcacgg 179
>ref|XM_822816.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.61.2500) partial mRNA Length = 345 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttc 26 ||||||||||||||||||||| Sbjct: 82 cacacgcacacacacatcttc 102
>gb|AC012397.33| Mus musculus strain 129/Sv clone ct7-369p18 map 6, complete sequence Length = 140198 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 caatcacacgcacacacacat 22 ||||||||||||||||||||| Sbjct: 16520 caatcacacgcacacacacat 16540
>ref|NM_131270.1| Danio rerio forkhead box D5 (foxd5), mRNA Length = 1170 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 280 gtcgctctcgctctccccgga 300 ||||||||||||||||||||| Sbjct: 187 gtcgctctcgctctccccgga 167
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 229 gcagccgcggcacggcggccggcag 253 |||||||||||||||||||| |||| Sbjct: 15685 gcagccgcggcacggcggccagcag 15661
>emb|CR524821.5| Zebrafish DNA sequence from clone CH211-192F15 in linkage group 16, complete sequence Length = 152728 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcaatcacacgcacacacaca 21 ||||||||||||||||||||| Sbjct: 21722 tcaatcacacgcacacacaca 21742
>gb|AC007844.32| Mus musculus strain 129/Sv ES cell line CJ7 chromosome 6 clone ct7-541l22, complete sequence Length = 152316 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 caatcacacgcacacacacat 22 ||||||||||||||||||||| Sbjct: 127301 caatcacacgcacacacacat 127321
>gb|AF052251.1|AF052251 Danio rerio fork head domain protein FKD8 (fkd8) mRNA, complete cds Length = 1170 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 280 gtcgctctcgctctccccgga 300 ||||||||||||||||||||| Sbjct: 187 gtcgctctcgctctccccgga 167
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 271 gctcccgccgtcgctctcgctctcc 295 |||||||||||||||||| |||||| Sbjct: 22898553 gctcccgccgtcgctctctctctcc 22898577 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgcgccgcgtgcgcgtgcgc 162 |||||||||||||||||||| Sbjct: 23415687 tgcgccgcgtgcgcgtgcgc 23415706
>gb|AC135105.11| Mus musculus strain C57BL/6J clone rp23-354f7, complete sequence Length = 209282 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 caatcacacgcacacacacat 22 ||||||||||||||||||||| Sbjct: 122599 caatcacacgcacacacacat 122619
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502H06 Length = 165630 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 271 gctcccgccgtcgctctcgctctcc 295 |||||||||||||||||| |||||| Sbjct: 73375 gctcccgccgtcgctctctctctcc 73399
>emb|BX649455.14| Zebrafish DNA sequence from clone CH211-151J12 in linkage group 4, complete sequence Length = 116689 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tcaatcacacgcacacacaca 21 ||||||||||||||||||||| Sbjct: 49407 tcaatcacacgcacacacaca 49427
>emb|AJ302911.1|MIC302911 Megalohelcon ichneumonoides partial 28S rRNA gene Length = 3260 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 gcgccgcgtgcgcgtgcgccc 164 ||||||||||||||||||||| Sbjct: 251 gcgccgcgtgcgcgtgcgccc 271
>emb|Z97941.1|MIZ97941 Megalohelcon ichneumonoides 28S rRNA gene, D2 variable region Length = 591 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 gcgccgcgtgcgcgtgcgccc 164 ||||||||||||||||||||| Sbjct: 249 gcgccgcgtgcgcgtgcgccc 269
>gb|AC114003.4| Mus musculus chromosome 18 clone RP23-174C24, complete sequence Length = 223724 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cacacgcacacacacatctt 25 |||||||||||||||||||| Sbjct: 220187 cacacgcacacacacatctt 220168
>ref|XM_468227.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1587 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ctgcgccgcgtgcgcgtgcg 161 |||||||||||||||||||| Sbjct: 140 ctgcgccgcgtgcgcgtgcg 159
>ref|XM_507542.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA Length = 1696 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ctgcgccgcgtgcgcgtgcg 161 |||||||||||||||||||| Sbjct: 207 ctgcgccgcgtgcgcgtgcg 226
>ref|XM_507541.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA Length = 1696 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ctgcgccgcgtgcgcgtgcg 161 |||||||||||||||||||| Sbjct: 207 ctgcgccgcgtgcgcgtgcg 226
>ref|XM_507023.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA Length = 1741 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ctgcgccgcgtgcgcgtgcg 161 |||||||||||||||||||| Sbjct: 222 ctgcgccgcgtgcgcgtgcg 241
>gb|AY775937.1| Bubalus bubalis clone BBMS108 microsatellite sequence Length = 888 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 5 tcacacgcacacacacatcttcacagaccaatcctc 40 |||||| |||||||||||| ||||| || ||||||| Sbjct: 379 tcacacacacacacacatcctcacacacaaatcctc 344
>gb|AY731568.1| Arachis hypogaea clone PM414 microsatellite sequence Length = 366 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 acacgcacacacacatcttc 26 |||||||||||||||||||| Sbjct: 118 acacgcacacacacatcttc 99
>gb|AY762229.1| Homo sapiens chronic myelogenous leukemia-associated protein mRNA, complete cds Length = 1872 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 cgccgtcgctctcgctctccccgg 299 |||| ||||||||||||||||||| Sbjct: 79 cgccctcgctctcgctctccccgg 56
>ref|XM_425596.1| PREDICTED: Gallus gallus similar to heparan sulfate 6-sulfotransferase 3 (LOC428025), mRNA Length = 1788 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cagccgcggcacggcggccg 249 |||||||||||||||||||| Sbjct: 114 cagccgcggcacggcggccg 95
>gb|AC108806.10| Mus musculus chromosome 14, clone RP23-246G7, complete sequence Length = 189619 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gctgcagccgcggcacggcg 245 |||||||||||||||||||| Sbjct: 57740 gctgcagccgcggcacggcg 57721
>ref|XM_955004.1| Neurospora crassa OR74A hypothetical protein (NCU05837.1) partial mRNA Length = 9630 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 agcgccaatggcaagaaccg 101 |||||||||||||||||||| Sbjct: 7693 agcgccaatggcaagaaccg 7712
>ref|XM_325691.1| Neurospora crassa OR74A hypothetical protein (NCU05837.1) partial mRNA Length = 9630 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 agcgccaatggcaagaaccg 101 |||||||||||||||||||| Sbjct: 7693 agcgccaatggcaagaaccg 7712
>gb|AC147474.2| Mus musculus BAC clone RP23-425D11 from chromosome 19, complete sequence Length = 195273 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cacacgcacacacacatctt 25 |||||||||||||||||||| Sbjct: 132315 cacacgcacacacacatctt 132334
>ref|NM_177753.2| Mus musculus SRY-box containing gene 21 (Sox21), mRNA Length = 2683 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gctgcagccgcggcacggcg 245 |||||||||||||||||||| Sbjct: 243 gctgcagccgcggcacggcg 262
>ref|NM_201159.1| Danio rerio membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) (mpp6), mRNA Length = 2072 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcaatcacacgcacacacac 20 |||||||||||||||||||| Sbjct: 1845 tcaatcacacgcacacacac 1826
>gb|AY491807.1| Euphydryas aurinia clone EA27 microsatellite sequence Length = 244 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 caatcacacgcacacacaca 21 |||||||||||||||||||| Sbjct: 139 caatcacacgcacacacaca 158
>gb|AC127232.4| Mus musculus chromosome 15 clone RP24-555P18, complete sequence Length = 190930 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||| |||||||||||||||||| Sbjct: 187756 cacacacacacacacatcttcaca 187779
>gb|BC063054.1| Mus musculus SRY-box containing gene 21, mRNA (cDNA clone IMAGE:5707035), partial cds Length = 2301 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gctgcagccgcggcacggcg 245 |||||||||||||||||||| Sbjct: 431 gctgcagccgcggcacggcg 450
>gb|AC144732.3| Mus musculus BAC clone RP24-244I18 from chromosome 15, complete sequence Length = 151944 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cacacgcacacacacatcttcaca 29 ||||| |||||||||||||||||| Sbjct: 45283 cacacacacacacacatcttcaca 45260
>gb|AC022168.6| Homo sapiens chromosome 16 clone RP11-89D3, complete sequence Length = 177322 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||||||||||||||| |||||| Sbjct: 23548 cacacgcacacacacatgttcaca 23571
>gb|AC117263.4| Mus musculus BAC clone RP24-547F18 from chromosome 19, complete sequence Length = 201607 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cacacgcacacacacatctt 25 |||||||||||||||||||| Sbjct: 47362 cacacgcacacacacatctt 47381
>ref|NM_014867.1| Homo sapiens kelch repeat and BTB (POZ) domain containing 11 (KBTBD11), mRNA Length = 6706 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 cgccgtcgctctcgctctccccgg 299 |||| ||||||||||||||||||| Sbjct: 1042 cgccctcgctctcgctctccccgg 1019
>gb|AC160976.2| Mus musculus BAC clone RP24-67M24 from chromosome 9, complete sequence Length = 184288 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cacacgcacacacacatcttcaca 29 ||||| |||||||||||||||||| Sbjct: 131745 cacacacacacacacatcttcaca 131722
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgccgcgtgcgcgtgcgccc 164 |||||||||||||||||||| Sbjct: 3739467 cgccgcgtgcgcgtgcgccc 3739448
>emb|AL353615.37| Human DNA sequence from clone RP11-555H7 on chromosome 9 Contains a gene for a novel protein (MGC35463), complete sequence Length = 107891 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cacacgcacacacacatcttcaca 29 |||||||||||||||| ||||||| Sbjct: 37264 cacacgcacacacacagcttcaca 37241
>emb|AL133481.14| Human DNA sequence from clone RP11-342M3 on chromosome 10 Contains the 3' end of the PPIF gene for peptidylprolyl isomerase F (cyclophilin F), gene FLJ90798, the EIF5AP1 pseudogene for eukaryotic translation initiation factor 5A pseudogene 1, a novel gene, a novel pseudogene and a CpG island, complete sequence Length = 167234 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tcacacgcacacacacatct 24 |||||||||||||||||||| Sbjct: 28371 tcacacgcacacacacatct 28352
>emb|AL133391.5| Human DNA sequence from clone RP11-22C13 on chromosome 9q21.31-22.1 Contains a ribosomal protein S6 (RPS6) pseudogene, complete sequence Length = 168324 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||||||||||||||| |||||| Sbjct: 137215 cacacgcacacacacatgttcaca 137238
>emb|CR388214.5| Zebrafish DNA sequence from clone CH211-269E4 in linkage group 21, complete sequence Length = 138978 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aatcacacgcacacacacat 22 |||||||||||||||||||| Sbjct: 99494 aatcacacgcacacacacat 99513
>emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigroviridis Length = 265677 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||| |||||||||||||||||| Sbjct: 76560 cacacacacacacacatcttcaca 76583
>gb|AC159821.2| Mus musculus BAC clone RP23-152A3 from chromosome 9, complete sequence Length = 221672 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||| |||||||||||||||||| Sbjct: 93353 cacacacacacacacatcttcaca 93376
>emb|CR933104.2| Medicago truncatula chromosome 5 clone mth2-25b3, COMPLETE SEQUENCE Length = 117135 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 caatcacacgcacacacaca 21 |||||||||||||||||||| Sbjct: 27541 caatcacacgcacacacaca 27522
>emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chromosome 11 no genes, complete sequence Length = 216199 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cacacgcacacacacatctt 25 |||||||||||||||||||| Sbjct: 187477 cacacgcacacacacatctt 187496
>gb|AC131566.1| Homo sapiens chromosome 16 clone RP11-141N14, complete sequence Length = 91907 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||||||||||||||| |||||| Sbjct: 78114 cacacgcacacacacatgttcaca 78137
>emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in linkage group 19, complete sequence Length = 147881 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tcaatcacacgcacacacac 20 |||||||||||||||||||| Sbjct: 6362 tcaatcacacgcacacacac 6381
>gb|BC045417.1| Danio rerio membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6), mRNA (cDNA clone MGC:55662 IMAGE:3815414), complete cds Length = 2072 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcaatcacacgcacacacac 20 |||||||||||||||||||| Sbjct: 1845 tcaatcacacgcacacacac 1826
>emb|BX571739.9| Zebrafish DNA sequence from clone DKEYP-75C7 in linkage group 15, complete sequence Length = 139312 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 cacgcacacacacatcttca 27 |||||||||||||||||||| Sbjct: 79446 cacgcacacacacatcttca 79427
>gb|BC069176.1| Mus musculus SRY-box containing gene 21, mRNA (cDNA clone MGC:66708 IMAGE:6815824), complete cds Length = 3143 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gctgcagccgcggcacggcg 245 |||||||||||||||||||| Sbjct: 672 gctgcagccgcggcacggcg 691
>gb|AC125621.6| Homo sapiens 3 BAC RP11-769N7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 85144 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||| |||||||||||||||||| Sbjct: 46627 cacacacacacacacatcttcaca 46650
>gb|DQ431145.1| Lates calcarifer clone Lca825 microsatellite sequence Length = 356 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cacacgcacacacacatctt 25 |||||||||||||||||||| Sbjct: 279 cacacgcacacacacatctt 260
>emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence Length = 265677 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||| |||||||||||||||||| Sbjct: 76560 cacacacacacacacatcttcaca 76583
>dbj|AK123204.1| Homo sapiens cDNA FLJ41210 fis, clone BRALZ2014484 Length = 1919 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 221 ccgctgctgcagccgcggcacggcggcc 248 ||||||| |||||||| ||||||||||| Sbjct: 1078 ccgctgccgcagccgcagcacggcggcc 1051
>gb|AC107216.5| Homo sapiens BAC clone RP11-490A22 from 4, complete sequence Length = 115109 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 2 caatcacacgcacacacacatcttcaca 29 ||||||||| ||||||||||| |||||| Sbjct: 49623 caatcacacacacacacacatattcaca 49650
>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185918 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 caatcacacgcacacacaca 21 |||||||||||||||||||| Sbjct: 77346 caatcacacgcacacacaca 77327
>gb|AC007596.7| Homo sapiens chromosome 16 clone RP11-116B6, complete sequence Length = 186210 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||||||||||||||| |||||| Sbjct: 50590 cacacgcacacacacatgttcaca 50613
>ref|XM_943973.1| PREDICTED: Homo sapiens hypothetical protein LOC389072, transcript variant 4 (LOC389072), mRNA Length = 628 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 221 ccgctgctgcagccgcggcacggcggcc 248 ||||||| |||||||| ||||||||||| Sbjct: 358 ccgctgccgcagccgcagcacggcggcc 331
>ref|XM_938953.1| PREDICTED: Homo sapiens hypothetical protein LOC389072, transcript variant 3 (LOC389072), mRNA Length = 3704 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 221 ccgctgctgcagccgcggcacggcggcc 248 ||||||| |||||||| ||||||||||| Sbjct: 2270 ccgctgccgcagccgcagcacggcggcc 2243
>ref|XM_934660.1| PREDICTED: Homo sapiens hypothetical protein LOC389072, transcript variant 2 (LOC389072), mRNA Length = 628 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 221 ccgctgctgcagccgcggcacggcggcc 248 ||||||| |||||||| ||||||||||| Sbjct: 358 ccgctgccgcagccgcagcacggcggcc 331
>ref|XM_371591.2| PREDICTED: Homo sapiens hypothetical protein LOC389072, transcript variant 1 (LOC389072), mRNA Length = 3704 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 221 ccgctgctgcagccgcggcacggcggcc 248 ||||||| |||||||| ||||||||||| Sbjct: 2270 ccgctgccgcagccgcagcacggcggcc 2243
>ref|XM_697372.1| PREDICTED: Danio rerio hypothetical protein LOC554853 (LOC554853), mRNA Length = 2048 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcaatcacacgcacacacac 20 |||||||||||||||||||| Sbjct: 1835 tcaatcacacgcacacacac 1816
>gb|AC182750.1| Gasterosteus aculeatus clone VMRC26-154C14, complete sequence Length = 80124 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cacacgcacacacacatctt 25 |||||||||||||||||||| Sbjct: 45350 cacacgcacacacacatctt 45369
>gb|AC182739.1| Gasterosteus aculeatus clone VMRC26-26K03, complete sequence Length = 171340 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 caatcacacgcacacacaca 21 |||||||||||||||||||| Sbjct: 68196 caatcacacgcacacacaca 68177
>emb|BX470097.9| Zebrafish DNA sequence from clone DKEYP-114E10 in linkage group 5, complete sequence Length = 96967 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cacacgcacacacacatcttcaca 29 |||||||||||||||||| ||||| Sbjct: 38429 cacacgcacacacacatcctcaca 38406
>dbj|AK037764.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130047P14 product:unclassifiable, full insert sequence Length = 3185 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cacacgcacacacacatctt 25 |||||||||||||||||||| Sbjct: 2338 cacacgcacacacacatctt 2319
>emb|BX004804.10| Zebrafish DNA sequence from clone CH211-39M5 in linkage group 5, complete sequence Length = 170010 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cacacgcacacacacatcttcaca 29 |||||||||||||||||| ||||| Sbjct: 9930 cacacgcacacacacatcctcaca 9907
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ctgcgccgcgtgcgcgtgcg 161 |||||||||||||||||||| Sbjct: 33712407 ctgcgccgcgtgcgcgtgcg 33712388 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgcgccgcgtgcgcgtgcgc 162 |||||||||||||||||||| Sbjct: 29713694 tgcgccgcgtgcgcgtgcgc 29713713
>gb|AF170801.5| Homo sapiens chromosome 8 clone CTA-392B3 map p23, complete sequence Length = 131992 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 cgccgtcgctctcgctctccccgg 299 |||| ||||||||||||||||||| Sbjct: 87138 cgccctcgctctcgctctccccgg 87115
>emb|BX294659.9| Zebrafish DNA sequence from clone DKEYP-15D12 in linkage group 12, complete sequence Length = 171920 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cacacgcacacacacatctt 25 |||||||||||||||||||| Sbjct: 154876 cacacgcacacacacatctt 154857
>emb|BX664747.11| Zebrafish DNA sequence from clone CH211-149D1 in linkage group 5, complete sequence Length = 115297 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 caatcacacgcacacacacatctt 25 ||||||||| |||||||||||||| Sbjct: 89391 caatcacacacacacacacatctt 89414
>emb|BX005061.9| Zebrafish DNA sequence from clone CH211-158F5 in linkage group 5, complete sequence Length = 155854 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tcaatcacacgcacacacac 20 |||||||||||||||||||| Sbjct: 90628 tcaatcacacgcacacacac 90647
>emb|BX088566.6| Zebrafish DNA sequence from clone DKEY-63E5 in linkage group 6, complete sequence Length = 195778 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 acacgcacacacacatcttc 26 |||||||||||||||||||| Sbjct: 135606 acacgcacacacacatcttc 135587
>gb|AC083900.6| Homo sapiens BAC clone RP11-372C13 from 2, complete sequence Length = 155161 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 ccgctgctgcagccgcggcacggcggcc 248 ||||||| |||||||| ||||||||||| Sbjct: 76305 ccgctgccgcagccgcagcacggcggcc 76332
>gb|AC103776.3| Homo sapiens chromosome 8, clone RP11-42O14, complete sequence Length = 165995 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 cgccgtcgctctcgctctccccgg 299 |||| ||||||||||||||||||| Sbjct: 90678 cgccctcgctctcgctctccccgg 90655
>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702D12 Length = 137332 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgcgccgcgtgcgcgtgcgc 162 |||||||||||||||||||| Sbjct: 63602 tgcgccgcgtgcgcgtgcgc 63621
>gb|AC019257.3| Homo sapiens chromosome 8, clone RP11-439C15, complete sequence Length = 220201 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 cgccgtcgctctcgctctccccgg 299 |||| ||||||||||||||||||| Sbjct: 15953 cgccctcgctctcgctctccccgg 15976
>gb|AY142959.1| Mus musculus HMG-box protein SOX21 (Sox21) mRNA, complete cds Length = 2683 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gctgcagccgcggcacggcg 245 |||||||||||||||||||| Sbjct: 243 gctgcagccgcggcacggcg 262
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gcgccccctcggcgctcccg 277 |||||||||||||||||||| Sbjct: 3883719 gcgccccctcggcgctcccg 3883738
>gb|AC142168.3| Mus musculus BAC clone RP24-80B23 from chromosome 9, complete sequence Length = 173152 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||| |||||||||||||||||| Sbjct: 9677 cacacacacacacacatcttcaca 9700
>dbj|AP003612.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0457B11 Length = 144015 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgcgccgcgtgcgcgtgcgc 162 |||||||||||||||||||| Sbjct: 134660 tgcgccgcgtgcgcgtgcgc 134679
>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1191_G08 Length = 172832 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgcgccgcgtgcgcgtgcgc 162 |||||||||||||||||||| Sbjct: 82673 tgcgccgcgtgcgcgtgcgc 82692
>dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0486H12 Length = 179085 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgcgccgcgtgcgcgtgcgc 162 |||||||||||||||||||| Sbjct: 75242 tgcgccgcgtgcgcgtgcgc 75261
>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1249_F12 Length = 133205 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ctgcgccgcgtgcgcgtgcg 161 |||||||||||||||||||| Sbjct: 80814 ctgcgccgcgtgcgcgtgcg 80795
>emb|BX005299.9| Zebrafish DNA sequence from clone CH211-107C24, complete sequence Length = 163047 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aatcacacgcacacacacat 22 |||||||||||||||||||| Sbjct: 137077 aatcacacgcacacacacat 137096
>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0700F06 Length = 139277 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ctgcgccgcgtgcgcgtgcg 161 |||||||||||||||||||| Sbjct: 43274 ctgcgccgcgtgcgcgtgcg 43255
>emb|BX648983.1|HSM809134 Homo sapiens mRNA; cDNA DKFZp686H2498 (from clone DKFZp686H2498) Length = 3709 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 221 ccgctgctgcagccgcggcacggcggcc 248 ||||||| |||||||| ||||||||||| Sbjct: 2250 ccgctgccgcagccgcagcacggcggcc 2223
>dbj|AB018254.1| Homo sapiens mRNA for KIAA0711 protein, partial cds Length = 6706 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 cgccgtcgctctcgctctccccgg 299 |||| ||||||||||||||||||| Sbjct: 1042 cgccctcgctctcgctctccccgg 1019
>dbj|AK119191.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H03, full insert sequence Length = 1587 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ctgcgccgcgtgcgcgtgcg 161 |||||||||||||||||||| Sbjct: 140 ctgcgccgcgtgcgcgtgcg 159
>ref|XM_309163.1| Anopheles gambiae str. PEST ENSANGP00000018527 (ENSANGG00000016038), partial mRNA Length = 561 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gcggcacggcggccggcagc 254 |||||||||||||||||||| Sbjct: 356 gcggcacggcggccggcagc 375
>dbj|AK106174.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C06, full insert sequence Length = 1696 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ctgcgccgcgtgcgcgtgcg 161 |||||||||||||||||||| Sbjct: 207 ctgcgccgcgtgcgcgtgcg 226
>dbj|AK104731.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C07, full insert sequence Length = 1696 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ctgcgccgcgtgcgcgtgcg 161 |||||||||||||||||||| Sbjct: 207 ctgcgccgcgtgcgcgtgcg 226
>dbj|AK068367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147C17, full insert sequence Length = 1742 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ctgcgccgcgtgcgcgtgcg 161 |||||||||||||||||||| Sbjct: 222 ctgcgccgcgtgcgcgtgcg 241
>emb|CR759822.17| Zebrafish DNA sequence from clone DKEYP-122A9 in linkage group 22, complete sequence Length = 166209 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||| |||||||||||||||||| Sbjct: 60605 cacacacacacacacatcttcaca 60628
>emb|BX927094.13| Zebrafish DNA sequence from clone CH211-142P8 in linkage group 22, complete sequence Length = 77143 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cacacgcacacacacatctt 25 |||||||||||||||||||| Sbjct: 15322 cacacgcacacacacatctt 15341
>emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in linkage group 19, complete sequence Length = 255824 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tcaatcacacgcacacacac 20 |||||||||||||||||||| Sbjct: 175142 tcaatcacacgcacacacac 175161
>emb|BX005121.8| Zebrafish DNA sequence from clone DKEY-5E16 in linkage group 20, complete sequence Length = 211231 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aatcacacgcacacacacat 22 |||||||||||||||||||| Sbjct: 96250 aatcacacgcacacacacat 96269
>emb|AL713987.7| Zebrafish DNA sequence from clone BUSM1-145B16 in linkage group 9, complete sequence Length = 113891 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 caatcacacgcacacacaca 21 |||||||||||||||||||| Sbjct: 11210 caatcacacgcacacacaca 11229
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete sequence Length = 299903 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 caatcacacgcacacacaca 21 |||||||||||||||||||| Sbjct: 259500 caatcacacgcacacacaca 259481
>emb|CT025686.7| Mouse DNA sequence from clone RP24-273I13 on chromosome 14, complete sequence Length = 186233 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gctgcagccgcggcacggcg 245 |||||||||||||||||||| Sbjct: 109323 gctgcagccgcggcacggcg 109342
>gb|AC130103.4| Rattus norvegicus BAC CH230-41L20 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 224716 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 cacacgcacacacacatcttcaca 29 ||||| |||||||||||||||||| Sbjct: 186061 cacacacacacacacatcttcaca 186038
>gb|AC147236.3| Mus musculus BAC clone RP23-357C20 from 1, complete sequence Length = 217902 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cacacgcacacacacatctt 25 |||||||||||||||||||| Sbjct: 99558 cacacgcacacacacatctt 99577
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 ctcccgtccccgggcccggg 333 |||||||||||||||||||| Sbjct: 3217220 ctcccgtccccgggcccggg 3217239
>emb|AL591469.9| Mouse DNA sequence from clone RP23-390D17 on chromosome 11, complete sequence Length = 168981 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacgcacacacacatcttcaca 29 ||||| |||||||||||||||||| Sbjct: 47346 cacacacacacacacatcttcaca 47369
>emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chromosome 18, complete sequence Length = 174264 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cacacgcacacacacatctt 25 |||||||||||||||||||| Sbjct: 61535 cacacgcacacacacatctt 61554 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,160,285 Number of Sequences: 3902068 Number of extensions: 3160285 Number of successful extensions: 163442 Number of sequences better than 10.0: 114 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 162312 Number of HSP's gapped (non-prelim): 1130 length of query: 365 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 343 effective length of database: 17,147,199,772 effective search space: 5881489521796 effective search space used: 5881489521796 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
