ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast48f09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190868.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1173 Score = 281 bits (142), Expect = 9e-73 Identities = 253/290 (87%) Strand = Plus / Plus Query: 133 accccggcttccatcctcaacccttcctccccgaccaccccgctaaccacgcggcagaag 192 ||||||| |||||||| ||||| |||||||| |||||||||| || ||||||||||| Sbjct: 64 accccgggatccatccttaacccgtcctccccatccaccccgctcacatcgcggcagaag 123 Query: 193 acccgcctcgccatctccctcctcaagtcctccccgccgccgccccccgaccagatcctc 252 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 124 agccgcctcgccatctccctcctcaagtccaccccgccgccgccccccgaccagatcctc 183 Query: 253 tccatctgccgcgccgccgcactctctccgaagacccacctcgaccgtgttgctctctcc 312 ||||||||||||||||| || ||||| ||| | ||||||||||||| || || |||||| Sbjct: 184 tccatctgccgcgccgcggcgctctccccggactcccacctcgaccgcgtggccctctcc 243 Query: 313 ctcgccacctcgaggctctccaccgccccggactccctccgagacctcacgtcctccctt 372 |||||| |||||| |||||| |||||||||||||| | || |||||| | |||||||| Sbjct: 244 ctcgccgcctcgaagctctcttccgccccggactccgttcgcgacctcgcctcctccctc 303 Query: 373 ctcatccccgaccacgcccaccacgccatcgtgctctttggtcaggccgg 422 |||| ||| ||||||||| ||||||||||| |||||| || |||||||| Sbjct: 304 ctcactccccaccacgccccccacgccatcgcgctcttcggccaggccgg 353
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 281 bits (142), Expect = 9e-73 Identities = 253/290 (87%) Strand = Plus / Plus Query: 133 accccggcttccatcctcaacccttcctccccgaccaccccgctaaccacgcggcagaag 192 ||||||| |||||||| ||||| |||||||| |||||||||| || ||||||||||| Sbjct: 33587136 accccgggatccatccttaacccgtcctccccatccaccccgctcacatcgcggcagaag 33587195 Query: 193 acccgcctcgccatctccctcctcaagtcctccccgccgccgccccccgaccagatcctc 252 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 33587196 agccgcctcgccatctccctcctcaagtccaccccgccgccgccccccgaccagatcctc 33587255 Query: 253 tccatctgccgcgccgccgcactctctccgaagacccacctcgaccgtgttgctctctcc 312 ||||||||||||||||| || ||||| ||| | ||||||||||||| || || |||||| Sbjct: 33587256 tccatctgccgcgccgcggcgctctccccggactcccacctcgaccgcgtggccctctcc 33587315 Query: 313 ctcgccacctcgaggctctccaccgccccggactccctccgagacctcacgtcctccctt 372 |||||| |||||| |||||| |||||||||||||| | || |||||| | |||||||| Sbjct: 33587316 ctcgccgcctcgaagctctcttccgccccggactccgttcgcgacctcgcctcctccctc 33587375 Query: 373 ctcatccccgaccacgcccaccacgccatcgtgctctttggtcaggccgg 422 |||| ||| ||||||||| ||||||||||| |||||| || |||||||| Sbjct: 33587376 ctcactccccaccacgccccccacgccatcgcgctcttcggccaggccgg 33587425 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 tccccgaccacgcccaccac 396 |||||||||||||||||||| Sbjct: 10888702 tccccgaccacgcccaccac 10888683
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 281 bits (142), Expect = 9e-73 Identities = 253/290 (87%) Strand = Plus / Plus Query: 133 accccggcttccatcctcaacccttcctccccgaccaccccgctaaccacgcggcagaag 192 ||||||| |||||||| ||||| |||||||| |||||||||| || ||||||||||| Sbjct: 132333 accccgggatccatccttaacccgtcctccccatccaccccgctcacatcgcggcagaag 132392 Query: 193 acccgcctcgccatctccctcctcaagtcctccccgccgccgccccccgaccagatcctc 252 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 132393 agccgcctcgccatctccctcctcaagtccaccccgccgccgccccccgaccagatcctc 132452 Query: 253 tccatctgccgcgccgccgcactctctccgaagacccacctcgaccgtgttgctctctcc 312 ||||||||||||||||| || ||||| ||| | ||||||||||||| || || |||||| Sbjct: 132453 tccatctgccgcgccgcggcgctctccccggactcccacctcgaccgcgtggccctctcc 132512 Query: 313 ctcgccacctcgaggctctccaccgccccggactccctccgagacctcacgtcctccctt 372 |||||| |||||| |||||| |||||||||||||| | || |||||| | |||||||| Sbjct: 132513 ctcgccgcctcgaagctctcttccgccccggactccgttcgcgacctcgcctcctccctc 132572 Query: 373 ctcatccccgaccacgcccaccacgccatcgtgctctttggtcaggccgg 422 |||| ||| ||||||||| ||||||||||| |||||| || |||||||| Sbjct: 132573 ctcactccccaccacgccccccacgccatcgcgctcttcggccaggccgg 132622
>dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C02 Length = 80086 Score = 281 bits (142), Expect = 9e-73 Identities = 253/290 (87%) Strand = Plus / Plus Query: 133 accccggcttccatcctcaacccttcctccccgaccaccccgctaaccacgcggcagaag 192 ||||||| |||||||| ||||| |||||||| |||||||||| || ||||||||||| Sbjct: 2008 accccgggatccatccttaacccgtcctccccatccaccccgctcacatcgcggcagaag 2067 Query: 193 acccgcctcgccatctccctcctcaagtcctccccgccgccgccccccgaccagatcctc 252 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2068 agccgcctcgccatctccctcctcaagtccaccccgccgccgccccccgaccagatcctc 2127 Query: 253 tccatctgccgcgccgccgcactctctccgaagacccacctcgaccgtgttgctctctcc 312 ||||||||||||||||| || ||||| ||| | ||||||||||||| || || |||||| Sbjct: 2128 tccatctgccgcgccgcggcgctctccccggactcccacctcgaccgcgtggccctctcc 2187 Query: 313 ctcgccacctcgaggctctccaccgccccggactccctccgagacctcacgtcctccctt 372 |||||| |||||| |||||| |||||||||||||| | || |||||| | |||||||| Sbjct: 2188 ctcgccgcctcgaagctctcttccgccccggactccgttcgcgacctcgcctcctccctc 2247 Query: 373 ctcatccccgaccacgcccaccacgccatcgtgctctttggtcaggccgg 422 |||| ||| ||||||||| ||||||||||| |||||| || |||||||| Sbjct: 2248 ctcactccccaccacgccccccacgccatcgcgctcttcggccaggccgg 2297
>dbj|AK071275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087D20, full insert sequence Length = 1487 Score = 281 bits (142), Expect = 9e-73 Identities = 253/290 (87%) Strand = Plus / Plus Query: 133 accccggcttccatcctcaacccttcctccccgaccaccccgctaaccacgcggcagaag 192 ||||||| |||||||| ||||| |||||||| |||||||||| || ||||||||||| Sbjct: 136 accccgggatccatccttaacccgtcctccccatccaccccgctcacatcgcggcagaag 195 Query: 193 acccgcctcgccatctccctcctcaagtcctccccgccgccgccccccgaccagatcctc 252 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 196 agccgcctcgccatctccctcctcaagtccaccccgccgccgccccccgaccagatcctc 255 Query: 253 tccatctgccgcgccgccgcactctctccgaagacccacctcgaccgtgttgctctctcc 312 ||||||||||||||||| || ||||| ||| | ||||||||||||| || || |||||| Sbjct: 256 tccatctgccgcgccgcggcgctctccccggactcccacctcgaccgcgtggccctctcc 315 Query: 313 ctcgccacctcgaggctctccaccgccccggactccctccgagacctcacgtcctccctt 372 |||||| |||||| |||||| |||||||||||||| | || |||||| | |||||||| Sbjct: 316 ctcgccgcctcgaagctctcttccgccccggactccgttcgcgacctcgcctcctccctc 375 Query: 373 ctcatccccgaccacgcccaccacgccatcgtgctctttggtcaggccgg 422 |||| ||| ||||||||| ||||||||||| |||||| || |||||||| Sbjct: 376 ctcactccccaccacgccccccacgccatcgcgctcttcggccaggccgg 425
>gb|BT018377.1| Zea mays clone EL01N0307D07.d mRNA sequence Length = 1515 Score = 139 bits (70), Expect = 8e-30 Identities = 190/230 (82%) Strand = Plus / Plus Query: 190 aagacccgcctcgccatctccctcctcaagtcctccccgccgccgccccccgaccagatc 249 |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 29 aagacccgactcgccatctccctcctcaagtcttccccgccgcctccccccgaccagatc 88 Query: 250 ctctccatctgccgcgccgccgcactctctccgaagacccacctcgaccgtgttgctctc 309 |||||||| ||||||||||| ||||| | ||| |||| ||| ||||||| | || || Sbjct: 89 ctctccatttgccgcgccgcggcactgaccccggagacacacatcgaccgcatcgcgctg 148 Query: 310 tccctcgccacctcgaggctctccaccgccccggactccctccgagacctcacgtcctcc 369 || || ||| | || | ||||||| |||| |||||| ||||||| |||||| | ||| || Sbjct: 149 tcgctagccgcatcaaagctctcctccgctccggacaccctccgtgacctcgcctccacc 208 Query: 370 cttctcatccccgaccacgcccaccacgccatcgtgctctttggtcaggc 419 | |||| ||| |||||| | ||||||||||| |||||| || ||||| Sbjct: 209 gtcctcaccccgcgccacgcaccccacgccatcgcgctcttcggccaggc 258
>gb|AC091536.2| Rattus norvegicus strain Brown Norway clone RP31-547A5, complete sequence Length = 175512 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 203 ccatctccctcctcaagtcctccc 226 |||||||||||||||||||||||| Sbjct: 107334 ccatctccctcctcaagtcctccc 107311
>emb|AL133384.12| Human DNA sequence from clone RP11-317F20 on chromosome 10 Contains the 3' end of the ABLIM1 gene for actin binding LIM protein 1, a pseudogene similar to part of small nuclear ribonucleoprotein polypeptide B (SNRPB2), the 5' end of a novel gene (FLJ14564) (FLJ14564) and a CpG island, complete sequence Length = 136572 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 354 agacctcacgtcctcccttctcatccc 380 ||||||||| ||||||||||||||||| Sbjct: 123639 agacctcacctcctcccttctcatccc 123613
>gb|AE009332.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 102 of 187 of the complete sequence Length = 10029 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 acctcgaccgtgttgctctct 310 ||||||||||||||||||||| Sbjct: 7583 acctcgaccgtgttgctctct 7603
>gb|AE008282.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 86 of 187 of the complete sequence Length = 10339 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 acctcgaccgtgttgctctct 310 ||||||||||||||||||||| Sbjct: 4042 acctcgaccgtgttgctctct 4022
>gb|AE012342.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 250 of 460 of the complete genome Length = 11364 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 ctccatctgccgcgccgccgc 272 ||||||||||||||||||||| Sbjct: 8305 ctccatctgccgcgccgccgc 8325
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 ctccatctgccgcgccgccgc 272 ||||||||||||||||||||| Sbjct: 2154033 ctccatctgccgcgccgccgc 2154013
>ref|XM_463969.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1089 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tcctccccgccgccgccccc 239 |||||||||||||||||||| Sbjct: 236 tcctccccgccgccgccccc 217
>ref|NM_183657.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 531 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tccccgaccacgcccaccac 396 |||||||||||||||||||| Sbjct: 173 tccccgaccacgcccaccac 192
>ref|XM_606216.2| PREDICTED: Bos taurus similar to CG5206-PA (LOC527814), mRNA Length = 618 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ccccgccgccgccccccgac 243 |||||||||||||||||||| Sbjct: 142 ccccgccgccgccccccgac 123
>ref|XM_362730.1| Magnaporthe grisea 70-15 hypothetical protein (MG08318.4) partial mRNA Length = 816 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 cctctccatctgccgcgccgccgc 272 |||| ||||||||||||||||||| Sbjct: 438 cctcgccatctgccgcgccgccgc 415
>gb|AC005538.3| Homo sapiens BAC clone RP11-332L11 from 2, complete sequence Length = 193627 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 cctccccgccgccgccccccgacc 244 ||||||| |||||||||||||||| Sbjct: 140023 cctccccaccgccgccccccgacc 140000
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 gaggctctccaccgccccgg 343 |||||||||||||||||||| Sbjct: 13298791 gaggctctccaccgccccgg 13298772
>emb|AL163284.2|HS21C084 Homo sapiens chromosome 21 segment HS21C084 Length = 340000 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 315366 ccctcctcccgtcctccccgccgccgcc 315393
>ref|NM_001039111.1| Homo sapiens tripartite motif-containing 71 (TRIM71), mRNA Length = 3138 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ccccgccgccgccccccgac 243 |||||||||||||||||||| Sbjct: 205 ccccgccgccgccccccgac 186
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 tcctccccgccgccgccccccgac 243 |||||||||||||||||| ||||| Sbjct: 21736 tcctccccgccgccgcccgccgac 21759
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence Length = 150416 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tccccgaccacgcccaccac 396 |||||||||||||||||||| Sbjct: 60021 tccccgaccacgcccaccac 60040
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02, complete sequence Length = 126659 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tccccgaccacgcccaccac 396 |||||||||||||||||||| Sbjct: 95607 tccccgaccacgcccaccac 95626
>emb|AL954238.1| Pan troglodytes chromosome 22 clone RP43-006A20 map 22q22.2-q22.3, complete sequence Length = 165383 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 114966 ccctcctcccgtcctccccgccgccgcc 114993
>gb|DQ092487.1| Homo sapiens beta amyloid cleaving enzyme 2 (BACE2) gene, promoter region, 5'UTR and partial cds Length = 2932 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 2777 ccctcctcccgtcctccccgccgccgcc 2804
>ref|NM_012105.3| Homo sapiens beta-site APP-cleaving enzyme 2 (BACE2), transcript variant a, mRNA Length = 2993 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 315 ccctcctcccgtcctccccgccgccgcc 342
>ref|NM_138992.1| Homo sapiens beta-site APP-cleaving enzyme 2 (BACE2), transcript variant b, mRNA Length = 2824 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 315 ccctcctcccgtcctccccgccgccgcc 342
>ref|NM_138991.1| Homo sapiens beta-site APP-cleaving enzyme 2 (BACE2), transcript variant c, mRNA Length = 2843 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 315 ccctcctcccgtcctccccgccgccgcc 342
>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20, complete sequence Length = 139421 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccctcctaaaccctaaaccc 59 |||||||||||||||||||| Sbjct: 117391 ccctcctaaaccctaaaccc 117372
>gb|AC116333.2| Homo sapiens chromosome 5 clone CTD-2242E19, complete sequence Length = 112119 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tctccctcctcaagtcctcc 225 |||||||||||||||||||| Sbjct: 86029 tctccctcctcaagtcctcc 86048
>ref|XM_940432.1| PREDICTED: Homo sapiens similar to abnormal cell LINeage family member (lin-41) (LOC651301), mRNA Length = 2457 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ccccgccgccgccccccgac 243 |||||||||||||||||||| Sbjct: 142 ccccgccgccgccccccgac 123
>gb|AY769996.1| Homo sapiens BACE2 (BACE2) gene, promoter and partial cds Length = 2025 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 1736 ccctcctcccgtcctccccgccgccgcc 1763
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tccccgaccacgcccaccac 396 |||||||||||||||||||| Sbjct: 32700586 tccccgaccacgcccaccac 32700605
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccctcctaaaccctaaaccc 59 |||||||||||||||||||| Sbjct: 14937613 ccctcctaaaccctaaaccc 14937594
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 gaggctctccaccgccccgg 343 |||||||||||||||||||| Sbjct: 13295566 gaggctctccaccgccccgg 13295547
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tcctccccgccgccgccccc 239 |||||||||||||||||||| Sbjct: 1409111 tcctccccgccgccgccccc 1409130
>gb|AC139452.4| Homo sapiens 3 BAC RP11-301L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164897 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ccccgccgccgccccccgac 243 |||||||||||||||||||| Sbjct: 114863 ccccgccgccgccccccgac 114882
>gb|AC151984.3| Mus musculus BAC clone RP23-388K15 from chromosome 10, complete sequence Length = 201867 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cctccccgccgccgcccccc 240 |||||||||||||||||||| Sbjct: 59891 cctccccgccgccgcccccc 59910
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13 Length = 133242 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 tccccgaccacgcccaccac 396 |||||||||||||||||||| Sbjct: 75718 tccccgaccacgcccaccac 75699
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 tccccgaccacgcccaccac 396 |||||||||||||||||||| Sbjct: 3371113 tccccgaccacgcccaccac 3371094
>gb|AF178532.1|AF178532 Homo sapiens aspartyl protease (BACE2) mRNA, complete cds Length = 2990 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 315 ccctcctcccgtcctccccgccgccgcc 342
>gb|AF188277.1|AF188277 Homo sapiens aspartyl protease (BACE2) mRNA, complete cds, alternatively spliced Length = 2821 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 315 ccctcctcccgtcctccccgccgccgcc 342
>gb|AF188276.1|AF188276 Homo sapiens aspartyl protease (BACE2) mRNA, complete cds, alternatively spliced Length = 2840 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 315 ccctcctcccgtcctccccgccgccgcc 342
>gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, complete sequence Length = 165304 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tctccctcctcaagtcctcc 225 |||||||||||||||||||| Sbjct: 20827 tctccctcctcaagtcctcc 20846
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ccacctcgaggctctccacc 336 |||||||||||||||||||| Sbjct: 813062 ccacctcgaggctctccacc 813043
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tcctccccgccgccgccccc 239 |||||||||||||||||||| Sbjct: 90383 tcctccccgccgccgccccc 90402
>dbj|AK073188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033003M11, full insert sequence Length = 3636 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 gaggctctccaccgccccgg 343 |||||||||||||||||||| Sbjct: 2140 gaggctctccaccgccccgg 2121
>gb|DQ232881.1| Homo sapiens LIN41 (LIN41) mRNA, complete cds Length = 3138 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ccccgccgccgccccccgac 243 |||||||||||||||||||| Sbjct: 205 ccccgccgccgccccccgac 186
>gb|AC102139.5| Mus musculus chromosome 15, clone RP23-286F21, complete sequence Length = 152946 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 cctccccgccgccgcccccc 240 |||||||||||||||||||| Sbjct: 83718 cctccccgccgccgcccccc 83699
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccctcctaaaccctaaaccc 59 |||||||||||||||||||| Sbjct: 14945854 ccctcctaaaccctaaaccc 14945835
>emb|AL773572.1|HS141D16 Homo sapiens chromosome 21 from PAC RP1-141D16 map 21q22.2,D21S349-MX1, complete sequence Length = 146073 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 75429 ccctcctcccgtcctccccgccgccgcc 75456
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ccacctcgaggctctccacc 336 |||||||||||||||||||| Sbjct: 484142 ccacctcgaggctctccacc 484123
>gb|AC132465.3| Mus musculus BAC clone RP23-58D1 from 10, complete sequence Length = 218313 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cctccccgccgccgcccccc 240 |||||||||||||||||||| Sbjct: 174550 cctccccgccgccgcccccc 174569
>gb|M97560.1|HUM21SEQE Human (clone LA171) chromosome 21 sequence Length = 796 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 209 ccctcctcaagtcctccccgccgccgcc 236 |||||||| |||||||||||||||||| Sbjct: 277 ccctcctcccgtcctccccgccgccgcc 250
>gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1739D07, from chromosome 3, complete sequence Length = 149539 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gaggctctccaccgccccgg 343 |||||||||||||||||||| Sbjct: 21050 gaggctctccaccgccccgg 21069 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,991,661 Number of Sequences: 3902068 Number of extensions: 2991661 Number of successful extensions: 68814 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67957 Number of HSP's gapped (non-prelim): 857 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
