ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast48f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TR19L_HUMAN (Q969Z4) Tumor necrosis factor receptor superfamily ... 32 1.1
2TR19L_MACFA (Q9N092) Tumor necrosis factor receptor superfamily ... 30 2.3
3RHAD_ECOLI (P32169) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) 29 5.2
4RHAD_ECOL6 (Q8FBE1) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) 29 5.2

>TR19L_HUMAN (Q969Z4) Tumor necrosis factor receptor superfamily member 19L|
           precursor (Receptor expressed in lymphoid tissues)
          Length = 430

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -1

Query: 339 CRPCSSGRKSREWSRSASLPPERCSSLTR--ASVSVEARD 226
           CRPC  G  S  W  S   P  RCS   R  A V +  RD
Sbjct: 48  CRPCPPGTFSAAWGSSPCQPHARCSLWRRLEAQVGMATRD 87



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>TR19L_MACFA (Q9N092) Tumor necrosis factor receptor superfamily member 19L|
           precursor (Receptor expressed in lymphoid tissues)
          Length = 430

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -1

Query: 339 CRPCSSGRKSREWSRSASLPPERCSSLTRASVSV 238
           CRPC  G  S  W  S   P  RCS   R    V
Sbjct: 48  CRPCPPGTFSAAWGSSPCQPHARCSLQRRLEAQV 81



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>RHAD_ECOLI (P32169) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)|
          Length = 274

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 224 QSLASTDTDALVKE-EQRSGGKLALRLHSRDFLPEEQGRHE 343
           Q +    TDA +K  ++R+GG L LRL   D  P     H+
Sbjct: 11  QGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQ 51



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>RHAD_ECOL6 (Q8FBE1) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)|
          Length = 274

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 224 QSLASTDTDALVKE-EQRSGGKLALRLHSRDFLPEEQGRHE 343
           Q +    TDA +K  ++R+GG L LRL   D  P     H+
Sbjct: 11  QGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQ 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,700,911
Number of Sequences: 219361
Number of extensions: 233508
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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