ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast48f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GEMI5_HUMAN (Q8TEQ6) Gem-associated protein 5 (Gemin5) 32 0.59
2GLR_MOUSE (Q61606) Glucagon receptor precursor (GL-R) 29 6.6
3MMP19_MOUSE (Q9JHI0) Matrix metalloproteinase-19 precursor (EC 3... 28 8.6

>GEMI5_HUMAN (Q8TEQ6) Gem-associated protein 5 (Gemin5)|
          Length = 1508

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 291 ARTSDAVSVA-FGDAYRNEAYGARLPPGAFERCGTDTFRVSG 413
           AR SDAV    FG A R   +  R+ PGA E  GT  FRV G
Sbjct: 17  ARCSDAVPGGLFGFAARTSVFLVRVGPGAGESPGTPPFRVIG 58



to top

>GLR_MOUSE (Q61606) Glucagon receptor precursor (GL-R)|
          Length = 485

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 143 TRHCRRRGEDVGMGMWEGGGARAGC 69
           TR+ ++ G+D+ + +W   GA AGC
Sbjct: 201 TRYSQKIGDDLSVSVWLSDGAMAGC 225



to top

>MMP19_MOUSE (Q9JHI0) Matrix metalloproteinase-19 precursor (EC 3.4.24.-)|
           (MMP-19) (Matrix metalloproteinase RASI)
          Length = 527

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 403 RKVSVPHRSKAPGGRRAPYASFRYASPNATLTASDVRAGDAQLVFTF 263
           R  +VP     P  R A + +F+Y S  A LT  +V+AG A +  +F
Sbjct: 113 RIFNVPSTLSLPRVRAALHQAFKYWSSVAPLTFREVKAGWADIRLSF 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,398,478
Number of Sequences: 219361
Number of extensions: 581317
Number of successful extensions: 1961
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top