| Clone Name | bast48f03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10, complete sequence Length = 156772 Score = 157 bits (79), Expect = 4e-35 Identities = 103/111 (92%) Strand = Plus / Plus Query: 248 gtgcacgtacacggtgaaggtgaagacgagctgcgcgtcgccggcgcggacgtcggacgc 307 |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 90322 gtgcacgtacacggtgcgggtgaagacgagctgcgcgtcgccggcgcggacggcggacat 90381 Query: 308 ggtcagcgtggcgttcggcgacgcgtaccggaacgaggcgtacggcgcgcg 358 |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 90382 tgtcagcgtcgcgttcggggacgcgtaccggaacgaggcgtacggcgcgcg 90432 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 399 ttccgcgtctccggggtgtgcgggtacggcgtctgctacctctgcctccgccgcgccggc 458 ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 90485 ttccgcgtcggcgggcagtgcgggtacggcgtctgctacctctacctccgccgcgccggc 90544 Query: 459 cg 460 || Sbjct: 90545 cg 90546
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 157 bits (79), Expect = 4e-35 Identities = 103/111 (92%) Strand = Plus / Plus Query: 248 gtgcacgtacacggtgaaggtgaagacgagctgcgcgtcgccggcgcggacgtcggacgc 307 |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 4203843 gtgcacgtacacggtgcgggtgaagacgagctgcgcgtcgccggcgcggacggcggacat 4203902 Query: 308 ggtcagcgtggcgttcggcgacgcgtaccggaacgaggcgtacggcgcgcg 358 |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 4203903 tgtcagcgtcgcgttcggggacgcgtaccggaacgaggcgtacggcgcgcg 4203953 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 399 ttccgcgtctccggggtgtgcgggtacggcgtctgctacctctgcctccgccgcgccggc 458 ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 4204006 ttccgcgtcggcgggcagtgcgggtacggcgtctgctacctctacctccgccgcgccggc 4204065 Query: 459 cg 460 || Sbjct: 4204066 cg 4204067 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tgctgctgctcgtcgccgtct 201 ||||||||||||||||||||| Sbjct: 19932114 tgctgctgctcgtcgccgtct 19932134 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tcgtcgccggcaatggcggg 142 |||||||||||||||||||| Sbjct: 3010482 tcgtcgccggcaatggcggg 3010463
>dbj|AK062702.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-B03, full insert sequence Length = 715 Score = 157 bits (79), Expect = 4e-35 Identities = 103/111 (92%) Strand = Plus / Plus Query: 248 gtgcacgtacacggtgaaggtgaagacgagctgcgcgtcgccggcgcggacgtcggacgc 307 |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 166 gtgcacgtacacggtgcgggtgaagacgagctgcgcgtcgccggcgcggacggcggacat 225 Query: 308 ggtcagcgtggcgttcggcgacgcgtaccggaacgaggcgtacggcgcgcg 358 |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 226 tgtcagcgtcgcgttcggggacgcgtaccggaacgaggcgtacggcgcgcg 276 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 399 ttccgcgtctccggggtgtgcgggtacggcgtctgctacctctgcctccgccgcgccggc 458 ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 329 ttccgcgtcggcgggcagtgcgggtacggcgtctgctacctctacctccgccgcgccggc 388 Query: 459 cg 460 || Sbjct: 389 cg 390
>ref|NM_191576.2| Oryza sativa (japonica cultivar-group), mRNA Length = 823 Score = 103 bits (52), Expect = 5e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 242 gcggacgtgcacgtacacggtgaaggtgaagacgagctgcgcgtcgccggcgcggacgtc 301 |||||||||| |||||||||| || | ||||||||||||||||||||| ||| ||||| Sbjct: 225 gcggacgtgctggtacacggtgcagatcaagacgagctgcgcgtcgccgtggcgcacgtc 284 Query: 302 ggacgcggtcagcgtggcgttcggcgacgcgtaccggaacgagg 345 ||||||||||||| | |||||||| ||||| ||||| ||||||| Sbjct: 285 ggacgcggtcagcctcgcgttcggggacgcctaccgcaacgagg 328 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 375 ttcgagcggtgcggcaccgacaccttccgcgtctccggggtgtgcgggtacggcgtctgc 434 ||||||||||||| ||||||||| |||||||| || ||||| |||||||||||| Sbjct: 388 ttcgagcggtgcgccaccgacacgttccgcgtggggggcccctgcggctacggcgtctgc 447 Query: 435 tacctctgcctccgccgcgccggccg 460 ||||||| |||||||||| ||||||| Sbjct: 448 tacctctacctccgccgctccggccg 473
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 103 bits (52), Expect = 5e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 242 gcggacgtgcacgtacacggtgaaggtgaagacgagctgcgcgtcgccggcgcggacgtc 301 |||||||||| |||||||||| || | ||||||||||||||||||||| ||| ||||| Sbjct: 3735184 gcggacgtgctggtacacggtgcagatcaagacgagctgcgcgtcgccgtggcgcacgtc 3735243 Query: 302 ggacgcggtcagcgtggcgttcggcgacgcgtaccggaacgagg 345 ||||||||||||| | |||||||| ||||| ||||| ||||||| Sbjct: 3735244 ggacgcggtcagcctcgcgttcggggacgcctaccgcaacgagg 3735287 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 375 ttcgagcggtgcggcaccgacaccttccgcgtctccggggtgtgcgggtacggcgtctgc 434 ||||||||||||| ||||||||| |||||||| || ||||| |||||||||||| Sbjct: 3735347 ttcgagcggtgcgccaccgacacgttccgcgtggggggcccctgcggctacggcgtctgc 3735406 Query: 435 tacctctgcctccgccgcgccggccg 460 ||||||| |||||||||| ||||||| Sbjct: 3735407 tacctctacctccgccgctccggccg 3735432
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24 Length = 154137 Score = 103 bits (52), Expect = 5e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 242 gcggacgtgcacgtacacggtgaaggtgaagacgagctgcgcgtcgccggcgcggacgtc 301 |||||||||| |||||||||| || | ||||||||||||||||||||| ||| ||||| Sbjct: 8726 gcggacgtgctggtacacggtgcagatcaagacgagctgcgcgtcgccgtggcgcacgtc 8785 Query: 302 ggacgcggtcagcgtggcgttcggcgacgcgtaccggaacgagg 345 ||||||||||||| | |||||||| ||||| ||||| ||||||| Sbjct: 8786 ggacgcggtcagcctcgcgttcggggacgcctaccgcaacgagg 8829 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 375 ttcgagcggtgcggcaccgacaccttccgcgtctccggggtgtgcgggtacggcgtctgc 434 ||||||||||||| ||||||||| |||||||| || ||||| |||||||||||| Sbjct: 8889 ttcgagcggtgcgccaccgacacgttccgcgtggggggcccctgcggctacggcgtctgc 8948 Query: 435 tacctctgcctccgccgcgccggccg 460 ||||||| |||||||||| ||||||| Sbjct: 8949 tacctctacctccgccgctccggccg 8974
>dbj|AK067273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098J12, full insert sequence Length = 823 Score = 103 bits (52), Expect = 5e-19 Identities = 91/104 (87%) Strand = Plus / Plus Query: 242 gcggacgtgcacgtacacggtgaaggtgaagacgagctgcgcgtcgccggcgcggacgtc 301 |||||||||| |||||||||| || | ||||||||||||||||||||| ||| ||||| Sbjct: 225 gcggacgtgctggtacacggtgcagatcaagacgagctgcgcgtcgccgtggcgcacgtc 284 Query: 302 ggacgcggtcagcgtggcgttcggcgacgcgtaccggaacgagg 345 ||||||||||||| | |||||||| ||||| ||||| ||||||| Sbjct: 285 ggacgcggtcagcctcgcgttcggggacgcctaccgcaacgagg 328 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 375 ttcgagcggtgcggcaccgacaccttccgcgtctccggggtgtgcgggtacggcgtctgc 434 ||||||||||||| ||||||||| |||||||| || ||||| |||||||||||| Sbjct: 388 ttcgagcggtgcgccaccgacacgttccgcgtggggggcccctgcggctacggcgtctgc 447 Query: 435 tacctctgcctccgccgcgccggccg 460 ||||||| |||||||||| ||||||| Sbjct: 448 tacctctacctccgccgctccggccg 473
>gb|AY019997.1| Oryza sativa microsatellite MRG2322 containing (CT)X14, closest to marker R2232, genomic sequence Length = 228 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Plus Query: 248 gtgcacgtacacggtgaaggtgaagacgagct 279 |||||||||||||||| |||||||||||||| Sbjct: 197 gtgcacgtacacggtgcgggtgaagacgagct 228
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 176 gctcctgctgctgctcgtcgccg 198 ||||||||||||||||||||||| Sbjct: 2532911 gctcctgctgctgctcgtcgccg 2532933
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 179 cctgctgctgctcgtcgccgtc 200 |||||||||||||||||||||| Sbjct: 301157 cctgctgctgctcgtcgccgtc 301136 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tgctgctgctcgtcgccgtc 200 |||||||||||||||||||| Sbjct: 2530938 tgctgctgctcgtcgccgtc 2530957
>ref|XM_538324.2| PREDICTED: Canis familiaris similar to Cadherin EGF LAG seven-pass G-type receptor 1 precursor (LOC481203), mRNA Length = 9309 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 ctcctgctgctgctcgtcgccg 198 |||||||||||||||||||||| Sbjct: 8275 ctcctgctgctgctcgtcgccg 8296
>gb|AF003142.1| Caenorhabditis elegans cosmid F57C9, complete sequence Length = 32048 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 gctgctcgtcgccgtcttcgga 206 |||||||||||||||||||||| Sbjct: 29225 gctgctcgtcgccgtcttcgga 29204
>gb|U97192.2| Caenorhabditis elegans cosmid C01F4, complete sequence Length = 17773 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 gctgctcgtcgccgtcttcgga 206 |||||||||||||||||||||| Sbjct: 177 gctgctcgtcgccgtcttcgga 156
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 179 cctgctgctgctcgtcgccgtc 200 |||||||||||||||||||||| Sbjct: 78440 cctgctgctgctcgtcgccgtc 78419 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 tgctgctgctcgtcgccgtc 200 |||||||||||||||||||| Sbjct: 1851690 tgctgctgctcgtcgccgtc 1851671
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 121 cctcgtcgccggcaatggcggg 142 |||||||||||||||||||||| Sbjct: 2293308 cctcgtcgccggcaatggcggg 2293287 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 cgtcttcggaggcttctcccccga 220 ||||||||| |||||||||||||| Sbjct: 4364182 cgtcttcggcggcttctcccccga 4364159
>ref|NM_059064.4| Caenorhabditis elegans C01F4.2a (C01F4.2) mRNA, complete cds Length = 3246 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 185 gctgctcgtcgccgtcttcgga 206 |||||||||||||||||||||| Sbjct: 2875 gctgctcgtcgccgtcttcgga 2896
>emb|AL645789.14| Zebrafish DNA sequence from clone RP71-11B17 in linkage group 22, complete sequence Length = 167635 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 gcctctcgctcctgctgctgct 190 |||||||||||||||||||||| Sbjct: 3080 gcctctcgctcctgctgctgct 3101
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 179 cctgctgctgctcgtcgccgtc 200 |||||||||||||||||||||| Sbjct: 75943 cctgctgctgctcgtcgccgtc 75922 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cgccggcgcggacgtcggacgcgg 309 |||||||||||||||||| ||||| Sbjct: 2574737 cgccggcgcggacgtcgggcgcgg 2574760
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 179 cctgctgctgctcgtcgccgtcttcg 204 |||||||||||||||||||| ||||| Sbjct: 1597966 cctgctgctgctcgtcgccgccttcg 1597941
>ref|XM_482371.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1449 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 175 cgctcctgctgctgctcgtcgccgt 199 |||| |||||||||||||||||||| Sbjct: 23 cgctgctgctgctgctcgtcgccgt 47
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 tcctgctgctgctcgtcgccg 198 ||||||||||||||||||||| Sbjct: 2055251 tcctgctgctgctcgtcgccg 2055271 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 179 cctgctgctgctcgtcgccgt 199 ||||||||||||||||||||| Sbjct: 703748 cctgctgctgctcgtcgccgt 703728
>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02, complete sequence Length = 178061 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tgctgctgctcgtcgccgtct 201 ||||||||||||||||||||| Sbjct: 73278 tgctgctgctcgtcgccgtct 73298
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 cgacagccgcaccgaggcggc 238 ||||||||||||||||||||| Sbjct: 2467170 cgacagccgcaccgaggcggc 2467150 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 cgtcttcggaggcttctcccccga 220 ||||||||| |||||||||||||| Sbjct: 1908445 cgtcttcggcggcttctcccccga 1908468
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 tgctgctgctcgtcgccgtct 201 ||||||||||||||||||||| Sbjct: 21244891 tgctgctgctcgtcgccgtct 21244871 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cctgctgctgctcgtcgccg 198 |||||||||||||||||||| Sbjct: 20641185 cctgctgctgctcgtcgccg 20641204 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 cctctgcctccgccgcgccggccg 460 |||| ||||||||||||||||||| Sbjct: 16412940 cctccgcctccgccgcgccggccg 16412917
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 175 cgctcctgctgctgctcgtcgccgt 199 |||| |||||||||||||||||||| Sbjct: 19676155 cgctgctgctgctgctcgtcgccgt 19676179
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 cgcgtcgccggcgcggacgtc 301 ||||||||||||||||||||| Sbjct: 1422612 cgcgtcgccggcgcggacgtc 1422632 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 280 gcgcgtcgccggcgcggacgtcgg 303 ||||| |||||||||||||||||| Sbjct: 1354372 gcgcgccgccggcgcggacgtcgg 1354349
>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0007M04 Length = 176293 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 175 cgctcctgctgctgctcgtcgccgt 199 |||| |||||||||||||||||||| Sbjct: 5106 cgctgctgctgctgctcgtcgccgt 5130
>dbj|AK121270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105L07, full insert sequence Length = 2719 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tgctgctgctcgtcgccgtct 201 ||||||||||||||||||||| Sbjct: 853 tgctgctgctcgtcgccgtct 873
>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0042B03 Length = 167669 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 175 cgctcctgctgctgctcgtcgccgt 199 |||| |||||||||||||||||||| Sbjct: 151715 cgctgctgctgctgctcgtcgccgt 151739
>dbj|AK069882.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035P09, full insert sequence Length = 2796 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tgctgctgctcgtcgccgtct 201 ||||||||||||||||||||| Sbjct: 943 tgctgctgctcgtcgccgtct 963
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0705E11 Length = 140729 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 tgctgctgctcgtcgccgtct 201 ||||||||||||||||||||| Sbjct: 115648 tgctgctgctcgtcgccgtct 115628
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 cggcgcgcgcctcccgcccggcgc 373 |||||||||||||| ||||||||| Sbjct: 3499866 cggcgcgcgcctccggcccggcgc 3499889
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ccccatcccaacgtcctcgc 121 |||||||||||||||||||| Sbjct: 608588 ccccatcccaacgtcctcgc 608569
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 tgctgctgctcgtcgccgtc 200 |||||||||||||||||||| Sbjct: 1034857 tgctgctgctcgtcgccgtc 1034838
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tcgtcgccggcaatggcggg 142 |||||||||||||||||||| Sbjct: 104498 tcgtcgccggcaatggcggg 104479
>gb|BC078077.1| Xenopus laevis MGC82985 protein, mRNA (cDNA clone MGC:82985 IMAGE:5515963), complete cds Length = 2284 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 cctctcgctcctgctgctgctcgt 193 ||||||||| |||||||||||||| Sbjct: 26 cctctcgctgctgctgctgctcgt 49
>gb|AY492240.1| Corynebacterium renale strain CIP 103421 RpoB (rpoB) gene, partial cds Length = 3442 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gtcgccggcgcggacgtcgg 303 |||||||||||||||||||| Sbjct: 2339 gtcgccggcgcggacgtcgg 2320
>gb|AY659116.1| Synthetic construct Peudomonas aeruginosa clone FLH037633.01F PA5206 gene, partial cds Length = 1155 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ggcgttcggcgacgcgtacc 336 |||||||||||||||||||| Sbjct: 946 ggcgttcggcgacgcgtacc 927
>ref|XM_572358.1| Cryptococcus neoformans var. neoformans JEC21 arylformamidase (CNH01830) partial mRNA Length = 1433 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 ccccatcccaacgtcctcgc 121 |||||||||||||||||||| Sbjct: 208 ccccatcccaacgtcctcgc 227
>emb|AL591742.7| Human DNA sequence from clone RP4-590F24 on chromosome 1 Contains the 3' end of the gene for HNOEL-iso protein (HNOEL-iso) and a ribosomal protein L13a (RPL13A) pseudogene, complete sequence Length = 86049 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cccttcccacatccccatcc 109 |||||||||||||||||||| Sbjct: 3833 cccttcccacatccccatcc 3814
>ref|XM_504478.1| Yarrowia lipolytica CLIB122, YALI0E27715g predicted mRNA Length = 1659 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 172 tctcgctcctgctgctgctcgtcgccgt 199 ||||||||||||||||||| ||| |||| Sbjct: 1208 tctcgctcctgctgctgcttgtcaccgt 1181
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 185 gctgctcgtcgccgtcttcggaggcttc 212 |||||||| ||||| ||||||||||||| Sbjct: 1255547 gctgctcgccgccgccttcggaggcttc 1255520
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 tcctgctgctgctcgtcgcc 197 |||||||||||||||||||| Sbjct: 2238640 tcctgctgctgctcgtcgcc 2238621
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 cagcgtggcgttcggcgacg 330 |||||||||||||||||||| Sbjct: 256322 cagcgtggcgttcggcgacg 256303
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 cagcgtggcgttcggcgacg 330 |||||||||||||||||||| Sbjct: 47360 cagcgtggcgttcggcgacg 47341
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 cagcgtggcgttcggcgacg 330 |||||||||||||||||||| Sbjct: 109815 cagcgtggcgttcggcgacg 109796
>ref|NM_001000537.1| Rattus norvegicus olfactory receptor 1667 (predicted) (Olr1667_predicted), mRNA Length = 945 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 176 gctcctgctgctgctcgtcgccgtcttc 203 ||||| |||||||||| ||||||||||| Sbjct: 66 gctccagctgctgctcttcgccgtcttc 93
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gctgcgcgtcgccggcgcgg 296 |||||||||||||||||||| Sbjct: 2053246 gctgcgcgtcgccggcgcgg 2053265
>gb|AY028431.1| Burkholderia cepacia genomovar III putative type III secretion gene cluster, complete sequence Length = 34600 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cctgctgctgctcgtcgccg 198 |||||||||||||||||||| Sbjct: 3773 cctgctgctgctcgtcgccg 3754
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gctcctacacggcggcgcaa 62 |||||||||||||||||||| Sbjct: 2547308 gctcctacacggcggcgcaa 2547327
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 cgcgcgcctcccgcccggcg 372 |||||||||||||||||||| Sbjct: 1235577 cgcgcgcctcccgcccggcg 1235596
>gb|AE004933.1| Pseudomonas aeruginosa PAO1, section 494 of 529 of the complete genome Length = 11222 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ggcgttcggcgacgcgtacc 336 |||||||||||||||||||| Sbjct: 8101 ggcgttcggcgacgcgtacc 8120
>gb|AC097628.2| Takifugu rubripes clone 264E2, complete sequence Length = 88203 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gcctctcgctcctgctgctg 188 |||||||||||||||||||| Sbjct: 62652 gcctctcgctcctgctgctg 62633
>gb|AC055858.18| Homo sapiens chromosome 17, clone RP11-682M7, complete sequence Length = 167395 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ccttcccacatccccatccc 110 |||||||||||||||||||| Sbjct: 30086 ccttcccacatccccatccc 30105
>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1112_E07 Length = 132055 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cctgctgctgctcgtcgccg 198 |||||||||||||||||||| Sbjct: 34796 cctgctgctgctcgtcgccg 34815
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0515E01 Length = 140063 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cctgctgctgctcgtcgccg 198 |||||||||||||||||||| Sbjct: 106843 cctgctgctgctcgtcgccg 106862
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gcgcgtcgccggcgcggacg 299 |||||||||||||||||||| Sbjct: 4179124 gcgcgtcgccggcgcggacg 4179143
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0575F10 Length = 150462 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 cgcgcgcctcccgcccggcg 372 |||||||||||||||||||| Sbjct: 66668 cgcgcgcctcccgcccggcg 66687
>dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0046G12 Length = 189391 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 cctctgcctccgccgcgccggccg 460 |||| ||||||||||||||||||| Sbjct: 101487 cctccgcctccgccgcgccggccg 101464
>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0018H03, complete sequence Length = 94450 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 cgcgcgcctcccgcccggcg 372 |||||||||||||||||||| Sbjct: 9606 cgcgcgcctcccgcccggcg 9625
>gb|AY327402.2| Choristoneura fumiferana defective nucleopolyhedrovirus complete genome Length = 131160 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ctgctgctgctcgtcgccgt 199 |||||||||||||||||||| Sbjct: 14195 ctgctgctgctcgtcgccgt 14176
>dbj|AK073741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067A21, full insert sequence Length = 1444 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cctgctgctgctcgtcgccg 198 |||||||||||||||||||| Sbjct: 86 cctgctgctgctcgtcgccg 105
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 cggacgcggtcagcgtggcg 320 |||||||||||||||||||| Sbjct: 4470796 cggacgcggtcagcgtggcg 4470777
>gb|AC165443.5| Mus musculus BAC clone RP23-95F15 from chromosome 1, complete sequence Length = 174254 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gcctctcgctcctgctgctg 188 |||||||||||||||||||| Sbjct: 93215 gcctctcgctcctgctgctg 93234
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 172 tctcgctcctgctgctgctcgtcgccgt 199 ||||||||||||||||||| ||| |||| Sbjct: 3273132 tctcgctcctgctgctgcttgtcaccgt 3273159
>emb|X60682.1|HSCROAPR Human chromogranin A promoter region DNA Length = 962 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gctacctctgcctccgccgc 452 |||||||||||||||||||| Sbjct: 637 gctacctctgcctccgccgc 618
>dbj|D30815.1|STMCYP450 Streptomyces carbophilus gene for cytochrome P-450sca-2, complete cds Length = 1274 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 cctgctgctgctcgtcgccg 198 |||||||||||||||||||| Sbjct: 760 cctgctgctgctcgtcgccg 779 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,478,746 Number of Sequences: 3902068 Number of extensions: 3478746 Number of successful extensions: 90686 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86704 Number of HSP's gapped (non-prelim): 3982 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)