>PHK_STRCO (Q8CK51) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 796

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
 Frame = +2

Query: 143 GGREPARRHAVPHGPRRIGRA----------DQPLPHLVR---PVGGPGAG------CAP 265
           G   PA   A+P GPRR+G            + P+P L +   PVG PGA          
Sbjct: 346 GAPRPAVLAAIPEGPRRLGATPYANGGLLLRELPVPPLEKYAVPVGEPGASTHEPTRVLG 405

Query: 266 RLPRLPLSSSAVPRRLRLVGPHAAA 340
            L R  ++++   R  RLVGP   A
Sbjct: 406 DLLRDVMAATTDRRDFRLVGPDETA 430

>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 140 PGGREPARRHAVPHGPRRIGRADQPLPHL----VRPVGGPGAGCAPR 268
           PG +  AR   V + P   G AD+P P       RP GGP  G APR
Sbjct: 175 PGPKPGARAPRVANNPFSTGAADRPGPRPGGGGPRPGGGPRPGGAPR 221

>DAPA1_WHEAT (P24846) Dihydrodipicolinate synthase 1, chloroplast precursor (EC|
           4.2.1.52) (DHDPS 1)
          Length = 388

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 152 EPARRHAVPHGPRRIGRADQPLPHLVRPVGGPGAGCAPRLPRLPLSSSAVPR 307
           +P R H  PH   R+ RA  P P    P G   +G   RL  +P+S  +  R
Sbjct: 5   QPPRPHPHPHPTSRLSRASPPSPFPFFPAGTSRSG---RLQPVPVSGHSASR 53

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 31/97 (31%), Positives = 35/97 (36%), Gaps = 23/97 (23%)
 Frame = +2

Query: 128 QAGIPGGREPARRHAVPH-----GPR----------RIGR---ADQPLPHLVRPV----- 238
           Q   PGG  P ++   P      GPR          R+G    + QP P   RP      
Sbjct: 141 QRPTPGGPRPGQQQQRPGAPAQGGPRPGPKPGPKTPRVGNNPYSSQPAPERERPAARPGP 200

Query: 239 GGPGAGCAPRLPRLPLSSSAVPRRLRLVGPHAAALHG 349
           GGP  G A   PR P      PR     GP  AA  G
Sbjct: 201 GGPRPGPAQGGPR-PGPGQGAPRPGATPGPRPAAAQG 236

>LEG3_HUMAN (P17931) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)|
           (IgE-binding protein) (35 kDa lectin)
           (Carbohydrate-binding protein 35) (CBP 35)
           (Laminin-binding protein) (Lectin L-29) (L-31)
           (Galactoside-binding protein) (GALBP)
          Length = 249

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
 Frame = +2

Query: 122 GVQAGIPGGREPARRHAVPHGPRRIGRADQPLPHLVRPVGGP-GAGCAPRLP--RLPLSS 292
           G     PG   P      P GP     + QP      P  GP GA   P +    LPL  
Sbjct: 64  GAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSAPGAYPATGPYGAPAGPLIVPYNLPLPG 123

Query: 293 SAVPRRL 313
             VPR L
Sbjct: 124 GVVPRML 130

>TBX2_CAEEL (Q19691) T-box protein 2|
          Length = 423

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 185 PRRIGRADQPLPHLVRPVGGPGAGCAP 265
           P  +GR D  LP +   VGGPGAG  P
Sbjct: 5   PFALGRPDLLLPFMGAGVGGPGAGGPP 31

>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator|
            of retinoic acid and thyroid hormone receptor) (SMRT)
            (SMRTe) (Thyroid-, retinoic-acid-receptor-associated
            corepressor) (T3 receptor-associating factor) (TRAC)
          Length = 2472

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 197  GRADQPLPHLVRPVGGPGAGCAPRLPRLPLSSSAVPRRLRLVGPHAAALHGP 352
            GR   P P L+ P G P A  +   P+ PL    + +R   + P    +H P
Sbjct: 934  GRLLSPRPSLLTPAGDPRASTS---PQKPLDLKQLKQRAAAIPPIVTKVHEP 982

>IF3X_HUMAN (O75153) Putative eukaryotic translation initiation factor 3 subunit|
            (eIF-3)
          Length = 1309

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 152  EPARRHAVPHGPRRIGRADQPLPHLVRPVGGPG 250
            E ARRH +    R   RA++P+     P G PG
Sbjct: 1259 EVARRHQLQEASRNRDRAEEPMATEPAPAGAPG 1291

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
 Frame = +2

Query: 128 QAGIPGG--------REPARRHAVPHGPRRIGRADQPLPHLVRPVGGPGAGCAPRLPRLP 283
           +AG PGG          PA     P GP    R   P      PVG PG    PR P  P
Sbjct: 157 EAGAPGGPGRSSPSAASPASSSGSP-GPSAAPRRWSPARG--DPVGEPGPAARPRTPAPP 213

Query: 284 LSSSAVPRRLRLVGPHAAA 340
              +AV       GP + A
Sbjct: 214 AQPAAVAAAPARRGPASPA 232

>Y3487_RHOPA (Q6N453) UPF0341 protein RPA3487|
          Length = 204

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = -2

Query: 329 ADPPVGDXXXXXXXXXXXXEVAEHSLRRVLPPAV--PDEEEVGRRARYD 189
           ADP VG+             V +  LR   PPA   P  +  G+  RYD
Sbjct: 148 ADPDVGELLAAALSADCGRVVLKWPLRAAAPPAARKPSHQIAGKTVRYD 196

>GLYA_METTM (P50436) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 424

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -2

Query: 233 AVPDEEEVGRRARYDGAHVV 174
           AV   EEVG R  YDGAHV+
Sbjct: 183 AVEAAEEVGARIMYDGAHVL 202

>IER5_HUMAN (Q5VY09) Immediate early response gene 5 protein|
          Length = 327

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -1

Query: 189 RGPCGTACLRAGSRPPGIPACTP 121
           R PCG  C   G  PPG PA TP
Sbjct: 173 RRPCG--CPLGGEDPPGTPAATP 193

>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = +2

Query: 158 ARRHAVPHGPRRIGRADQPLPHLVRPVGGPG---AGCAPRLPRLPLSSSAVPRRLRLVGP 328
           A R A P  PR       PL   V    G G   A   PR+  LP ++     + R VG 
Sbjct: 281 ATRPAPPGAPRSSSSGGAPLRAGVGSGSGGGPAVAAVVPRVASLPPAAGGGRAQARRVGE 340

Query: 329 HAAALHG 349
            AAA  G
Sbjct: 341 DAAAAEG 347

>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = +2

Query: 134 GIPGGREPARRHAVPHGPRRIGRADQPLPHLVRPVGGPGAGCAPRLPRLPLSSSAVPRRL 313
           G+PG +  A    +P  P  +G    P+P      G PG    P LP  P   +  P   
Sbjct: 692 GLPGMKGDAGLPGLPGLPGAVGPMGPPVPESQLRPGPPGKDGLPGLPG-PKGEAGFPGAP 750

Query: 314 RLVGP 328
            L GP
Sbjct: 751 GLQGP 755


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,145,533
Number of Sequences: 219361
Number of extensions: 955141
Number of successful extensions: 3268
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3264
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)