ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast48e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OVOL1_HUMAN (O14753) Putative transcription factor Ovo-like 1 (h... 29 4.2
2COLL7_MIMIV (Q5UNS9) Collagen-like protein 7 29 4.2
3MTH1_DROME (Q9VXD9) Probable G-protein coupled receptor Mth-like... 28 7.2
4EAD_EBV (P03191) Early antigen protein D (EA-D) 28 7.2
5PNMT_MOUSE (P40935) Phenylethanolamine N-methyltransferase (EC 2... 28 9.4
6VP19_HHV2G (P22486) Capsid assembly and DNA maturation protein (... 28 9.4

>OVOL1_HUMAN (O14753) Putative transcription factor Ovo-like 1 (hOvo1)|
          Length = 267

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 8   PDRDAPAVLLALALSFQSPKPAATNNPSPPRTPRCPLWL 124
           PD +   + + ++L F  P+P     PS    P CPL L
Sbjct: 23  PDEERGEIYVPVSLGFCPPQPYREPEPSVAEPPSCPLAL 61



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>COLL7_MIMIV (Q5UNS9) Collagen-like protein 7|
          Length = 1937

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 417 NNNWSFQLCSSVRDCLFNSSDVGAHTRGEAGGGCPEAVGSERG 289
           N  W   +C++ R C         HT+GE G   P+ +  E+G
Sbjct: 69  NGVWVKNVCNNHRCCYPKECKGNPHTKGEKGETGPKGIKGEKG 111



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>MTH1_DROME (Q9VXD9) Probable G-protein coupled receptor Mth-like 1 precursor|
           (Protein methuselah-like 1)
          Length = 676

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 29  VLLALALSFQSPKPAATNNPSPPRT 103
           V ++LA+   SP PAA   PSPP T
Sbjct: 32  VSMSLAIEEMSPPPAAPPRPSPPPT 56



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>EAD_EBV (P03191) Early antigen protein D (EA-D)|
          Length = 404

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 5   PPDRDAPAVLLALALSFQSPKPAATNNPSPPRTPRCPLW 121
           P D+      L   L  Q P+   + +PSPP  PR P W
Sbjct: 310 PEDKSPRVQPLGTGLQ-QRPRHTVSPSPSPPPPPRTPTW 347



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>PNMT_MOUSE (P40935) Phenylethanolamine N-methyltransferase (EC 2.1.1.28)|
           (PNMTase) (Noradrenaline N-methyltransferase)
          Length = 295

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   PDRDAPAVLLALALSFQSPKPAATNNPSPPR 100
           PD DA  V +ALA     P+    NN +PPR
Sbjct: 25  PDSDAGQVAVALAYQRFEPRAYLRNNYAPPR 55



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>VP19_HHV2G (P22486) Capsid assembly and DNA maturation protein (Capsid protein|
           VP19C)
          Length = 466

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 5   PPDRDAPAVLLALALSFQSPKPAATNNPSPPRTPRCPLWLTD 130
           PP+R+    L  LA S QSP+ +A+   +P    R   W  D
Sbjct: 366 PPNRNVDFPLAVLAASSQSPRCSASQVTNPQFVDRLYRWQPD 407


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,248,745
Number of Sequences: 219361
Number of extensions: 433882
Number of successful extensions: 2481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2470
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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