ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast48e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB108145.1| Phleum pratense DNA, SSR, microsatellite A07-C12 103 5e-19
2gb|U31957.1|TAU31957 Triticum aestivum clone PEMB1 transposon Tn... 92 2e-15
3gb|AY106146.1| Zea mays PCO074795 mRNA sequence 82 2e-12
4ref|XM_465860.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
6dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
7dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
8ref|XM_472196.1| Oryza sativa (japonica cultivar-group), predic... 48 0.024
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
10dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 48 0.024
11emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 48 0.024
12emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 48 0.024
13emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 46 0.094
14ref|XM_846423.1| PREDICTED: Canis familiaris similar to Dre1 pro... 44 0.37
15gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.37
16gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, co... 42 1.5
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.5
18ref|XM_905932.2| PREDICTED: Mus musculus RIKEN cDNA 2810406K13 g... 42 1.5
19ref|XM_989045.1| PREDICTED: Mus musculus RIKEN cDNA 2810406K13 g... 42 1.5
20ref|XM_133597.5| PREDICTED: Mus musculus RIKEN cDNA 2810406K13 g... 42 1.5
21emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 42 1.5
22gb|AC121777.3| Mus musculus BAC clone RP23-359A23 from chromosom... 42 1.5
23dbj|AK013012.1| Mus musculus 10, 11 days embryo whole body cDNA,... 42 1.5
24gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
25dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
26dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.5
27dbj|AP001099.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.5
28ref|XM_481526.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
29gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
30gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
31gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
32ref|XM_743435.1| Aspergillus fumigatus Af293 allantoate permease... 40 5.8
33gb|BC014599.2| Homo sapiens tektin 1, mRNA (cDNA clone MGC:26720... 40 5.8
34gb|BC025341.1| Homo sapiens, Similar to cytoskeleton-associated ... 40 5.8
35gb|AC027763.9| Homo sapiens chromosome 17, clone RP11-530N7, com... 40 5.8
36ref|NM_053285.1| Homo sapiens tektin 1 (TEKT1), mRNA 40 5.8
37gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 5.8
38dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
39dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
41dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
42gb|AC034305.6|AC034305 Homo sapiens chromosome 17, clone RP11-60... 40 5.8
43dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.8
44dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
45dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
46dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
47dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
48gb|AY109929.1| Zea mays CL4401_1 mRNA sequence 40 5.8
49dbj|AP002518.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.8
50gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
51gb|CP000220.1| Drosophila melanogaster genomic scaffold 21100002... 40 5.8
52gb|AC132111.4| Mus musculus BAC clone RP24-200H19 from 14, compl... 40 5.8
53dbj|AP004550.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.8 
>dbj|AB108145.1| Phleum pratense DNA, SSR, microsatellite A07-C12
          Length = 449

 Score =  103 bits (52), Expect = 5e-19
 Identities = 82/92 (89%)
 Strand = Plus / Plus

                                                                       
Query: 340 ggtgtgcgcacccacgtcgctgctgttgaacaagcagtcgcgcacgctgctacagagctg 399
           |||||||||||||| || |||| ||||||||||||||| | ||| | ||||||||| |||
Sbjct: 167 ggtgtgcgcacccatgttgctgttgttgaacaagcagttgtgcaagatgctacagaactg 226

                                           
Query: 400 gaagctccagttgttgttgttacgggtgcttc 431
           ||||||||||||||||| ||||| ||||||||
Sbjct: 227 gaagctccagttgttgtcgttacaggtgcttc 258
to top
>gb|U31957.1|TAU31957 Triticum aestivum clone PEMB1 transposon Tn1721 homolog mRNA
          Length = 395

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                       
Query: 67  acccgccgctacaaataacccctctcctcctcgcacgccacgctgccccctctggcttac 126
           ||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 205 acccgccgtcacaaataacccccttcctcctcgcacgccacgctgccccctctggcttac 146

             
Query: 127 cg 128
           ||
Sbjct: 145 cg 144



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 37/39 (94%), Gaps = 1/39 (2%)
 Strand = Plus / Minus

                                                  
Query: 38  gctcttgctttgagcttccaaagccccaaacccgccgct 76
           |||||||||| ||||||||||||||||||| ||||||||
Sbjct: 248 gctcttgctt-gagcttccaaagccccaaagccgccgct 211
to top
>gb|AY106146.1| Zea mays PCO074795 mRNA sequence
          Length = 1342

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                       
Query: 336 ctctggtgtgcgcacccacgtcgctgctgttgaacaagcagtcgcgcacgctgctacaga 395
           |||||||||||  ||||| || |||||||||||||||||||| |   | | ||||||  |
Sbjct: 328 ctctggtgtgcaaacccatgttgctgctgttgaacaagcagttgtaaaagatgctaccaa 387

                                            
Query: 396 gctggaagctccagttgttgttgttacgggtgc 428
           ||||||||||||||||||||||||||| |||||
Sbjct: 388 gctggaagctccagttgttgttgttacaggtgc 420
to top
>ref|XM_465860.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 948

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 403 gctccagttgttgttgttacgggtgcttc 431
           |||||||||||||||||||| ||||||||
Sbjct: 205 gctccagttgttgttgttacaggtgcttc 233
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 403      gctccagttgttgttgttacgggtgcttc 431
                |||||||||||||||||||| ||||||||
Sbjct: 17950441 gctccagttgttgttgttacaggtgcttc 17950413
to top
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_B06
          Length = 99637

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 403   gctccagttgttgttgttacgggtgcttc 431
             |||||||||||||||||||| ||||||||
Sbjct: 85074 gctccagttgttgttgttacaggtgcttc 85046
to top
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F04
          Length = 139563

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 403   gctccagttgttgttgttacgggtgcttc 431
             |||||||||||||||||||| ||||||||
Sbjct: 12035 gctccagttgttgttgttacaggtgcttc 12007
to top
>ref|XM_472196.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 957

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 361 gctgttgaacaagcagtcgcgcacgctgctacagagctggaagctccagttgttgttgtt 420
           |||||||| |||||| | | ||| | ||||||| || ||||||||||||||||| |||| 
Sbjct: 181 gctgttgagcaagcacttgtgcaagatgctacaaagttggaagctccagttgttattgtg 240

                   
Query: 421 acgggtgc 428
           || |||||
Sbjct: 241 accggtgc 248
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                            
Query: 361      gctgttgaacaagcagtcgcgcacgctgctacagagctggaagctccagttgttgttgtt 420
                |||||||| |||||| | | ||| | ||||||| || ||||||||||||||||| |||| 
Sbjct: 18395931 gctgttgagcaagcacttgtgcaagatgctacaaagttggaagctccagttgttattgtg 18395872

                        
Query: 421      acgggtgc 428
                || |||||
Sbjct: 18395871 accggtgc 18395864
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 7       gcccgaccgcgacgcgcccgccgt 30
               ||||||||||||||||||||||||
Sbjct: 4339585 gcccgaccgcgacgcgcccgccgt 4339608
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 10      cgaccgcgacgcgcccgccgtgct 33
               ||||||||||||||||||||||||
Sbjct: 3130526 cgaccgcgacgcgcccgccgtgct 3130549
to top
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
             complete sequence
          Length = 133413

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 361   gctgttgaacaagcagtcgcgcacgctgctacagagctggaagctccagttgttgttgtt 420
             |||||||| |||||| | | ||| | ||||||| || ||||||||||||||||| |||| 
Sbjct: 97854 gctgttgagcaagcacttgtgcaagatgctacaaagttggaagctccagttgttattgtg 97795

                     
Query: 421   acgggtgc 428
             || |||||
Sbjct: 97794 accggtgc 97787
to top
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 273   ggccgccgcccgtacgtccgcgc 295
             |||||||||||||||||||||||
Sbjct: 19675 ggccgccgcccgtacgtccgcgc 19697
to top
>ref|XM_846423.1| PREDICTED: Canis familiaris similar to Dre1 protein (LOC609209),
           mRNA
          Length = 1929

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 228 cgccgcctcgtcctcggcgcgc 249
           ||||||||||||||||||||||
Sbjct: 549 cgccgcctcgtcctcggcgcgc 528
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 13      ccgcgacgcgcccgccgtgctc 34
               ||||||||||||||||||||||
Sbjct: 3122853 ccgcgacgcgcccgccgtgctc 3122874



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 233     cctcgtcctcggcgcgccgg 252
               ||||||||||||||||||||
Sbjct: 4722947 cctcgtcctcggcgcgccgg 4722928



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 12      accgcgacgcgcccgccgtg 31
               ||||||||||||||||||||
Sbjct: 3322794 accgcgacgcgcccgccgtg 3322813
to top
>gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, complete sequence
          Length = 175843

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 229   gccgcctcgtcctcggcgcgc 249
             |||||||||||||||||||||
Sbjct: 71498 gccgcctcgtcctcggcgcgc 71478
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 275     ccgccgcccgtacgtccgcgc 295
               |||||||||||||||||||||
Sbjct: 5997039 ccgccgcccgtacgtccgcgc 5997059
to top
>ref|XM_905932.2| PREDICTED: Mus musculus RIKEN cDNA 2810406K13 gene, transcript
           variant 3 (2810406K13Rik), mRNA
          Length = 1948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 gccgcctcgtcctcggcgcgc 249
           |||||||||||||||||||||
Sbjct: 440 gccgcctcgtcctcggcgcgc 420
to top
>ref|XM_989045.1| PREDICTED: Mus musculus RIKEN cDNA 2810406K13 gene (2810406K13Rik),
           mRNA
          Length = 1948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 gccgcctcgtcctcggcgcgc 249
           |||||||||||||||||||||
Sbjct: 440 gccgcctcgtcctcggcgcgc 420
to top
>ref|XM_133597.5| PREDICTED: Mus musculus RIKEN cDNA 2810406K13 gene, transcript
           variant 1 (2810406K13Rik), mRNA
          Length = 1948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 gccgcctcgtcctcggcgcgc 249
           |||||||||||||||||||||
Sbjct: 440 gccgcctcgtcctcggcgcgc 420
to top
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 297     ccgatccgaccgcctccgggc 317
               |||||||||||||||||||||
Sbjct: 1985846 ccgatccgaccgcctccgggc 1985866
to top
>gb|AC121777.3| Mus musculus BAC clone RP23-359A23 from chromosome 16, complete
             sequence
          Length = 192846

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 391   acagagctggaagctccagtt 411
             |||||||||||||||||||||
Sbjct: 40978 acagagctggaagctccagtt 40998
to top
>dbj|AK013012.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810406K13 product:hypothetical
           BTB/POZ domain/Kelch repeat containing protein, full
           insert sequence
          Length = 1928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 gccgcctcgtcctcggcgcgc 249
           |||||||||||||||||||||
Sbjct: 424 gccgcctcgtcctcggcgcgc 404
to top
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
             complete sequence
          Length = 111961

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 275   ccgccgcccgtacgtccgcgc 295
             |||||||||||||||||||||
Sbjct: 55574 ccgccgcccgtacgtccgcgc 55594
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 275     ccgccgcccgtacgtccgcgc 295
               |||||||||||||||||||||
Sbjct: 5996252 ccgccgcccgtacgtccgcgc 5996272
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 234     ctcgtcctcggcgcgccgggg 254
               |||||||||||||||||||||
Sbjct: 3706144 ctcgtcctcggcgcgccgggg 3706164
to top
>dbj|AP001099.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-883A18, complete
            sequence
          Length = 164343

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 305  accgcctccgggcagccgccgccgg 329
            |||||| ||||||||||||||||||
Sbjct: 7975 accgcccccgggcagccgccgccgg 7951
to top
>ref|XM_481526.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 864

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 316 gcagccgccgccggcttctcctct 339
           ||||||||||||| ||||||||||
Sbjct: 139 gcagccgccgccgccttctcctct 116
to top
>gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0017M13,
              complete sequence
          Length = 161902

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 316    gcagccgccgccggcttctcctct 339
              ||||||||||||| ||||||||||
Sbjct: 127524 gcagccgccgccgccttctcctct 127501
to top
>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0004P24, complete sequence
          Length = 137721

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    tgctttgagcttccaaagcc 62
             ||||||||||||||||||||
Sbjct: 40425 tgctttgagcttccaaagcc 40444
to top
>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0111O13, complete sequence
          Length = 126332

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   cgcctccgggcagccgccgc 326
             ||||||||||||||||||||
Sbjct: 65717 cgcctccgggcagccgccgc 65736
to top
>ref|XM_743435.1| Aspergillus fumigatus Af293 allantoate permease (Afu3g02080)
           partial mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 tgcctcgcgccgcctcgtcc 240
           ||||||||||||||||||||
Sbjct: 156 tgcctcgcgccgcctcgtcc 175
to top
>gb|BC014599.2| Homo sapiens tektin 1, mRNA (cDNA clone MGC:26720 IMAGE:4824860),
           complete cds
          Length = 1428

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 393 agagctggaagctccagttg 412
           ||||||||||||||||||||
Sbjct: 21  agagctggaagctccagttg 40
to top
>gb|BC025341.1| Homo sapiens, Similar to cytoskeleton-associated protein 4, clone
           IMAGE:5093829, mRNA, partial cds
          Length = 2050

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 223 cctcgcgccgcctcgtcctcggcg 246
           |||| |||||||||||||||||||
Sbjct: 146 cctctcgccgcctcgtcctcggcg 169
to top
>gb|AC027763.9| Homo sapiens chromosome 17, clone RP11-530N7, complete sequence
          Length = 169770

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 393    agagctggaagctccagttg 412
              ||||||||||||||||||||
Sbjct: 147101 agagctggaagctccagttg 147120
to top
>ref|NM_053285.1| Homo sapiens tektin 1 (TEKT1), mRNA
          Length = 1428

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 393 agagctggaagctccagttg 412
           ||||||||||||||||||||
Sbjct: 21  agagctggaagctccagttg 40
to top
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 226     cgcgccgcctcgtcctcggcgcgc 249
               |||||||||||||||| |||||||
Sbjct: 3233367 cgcgccgcctcgtccttggcgcgc 3233344
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      tgctttgagcttccaaagcc 62
               ||||||||||||||||||||
Sbjct: 7776530 tgctttgagcttccaaagcc 7776511
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 307      cgcctccgggcagccgccgc 326
                ||||||||||||||||||||
Sbjct: 12105899 cgcctccgggcagccgccgc 12105918
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 316      gcagccgccgccggcttctcctct 339
                ||||||||||||| ||||||||||
Sbjct: 13403051 gcagccgccgccgccttctcctct 13403028
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     cgcctccgggcagccgccgc 326
               ||||||||||||||||||||
Sbjct: 2233286 cgcctccgggcagccgccgc 2233305
to top
>gb|AC034305.6|AC034305 Homo sapiens chromosome 17, clone RP11-609D21, complete sequence
          Length = 103699

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   agagctggaagctccagttg 412
             ||||||||||||||||||||
Sbjct: 83800 agagctggaagctccagttg 83781
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 276     cgccgcccgtacgtccgcgctccg 299
               |||||||| |||||||||||||||
Sbjct: 7882097 cgccgcccctacgtccgcgctccg 7882074
to top
>dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1136D08
          Length = 176635

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 316    gcagccgccgccggcttctcctct 339
              ||||||||||||| ||||||||||
Sbjct: 154520 gcagccgccgccgccttctcctct 154497
to top
>dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1120_B07
          Length = 118763

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 316   gcagccgccgccggcttctcctct 339
             ||||||||||||| ||||||||||
Sbjct: 39778 gcagccgccgccgccttctcctct 39755
to top
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1759_F09
          Length = 149501

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   cgcctccgggcagccgccgc 326
             ||||||||||||||||||||
Sbjct: 17358 cgcctccgggcagccgccgc 17377
to top
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0564H06
          Length = 146823

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   cgcctccgggcagccgccgc 326
             ||||||||||||||||||||
Sbjct: 40278 cgcctccgggcagccgccgc 40297
to top
>gb|AY109929.1| Zea mays CL4401_1 mRNA sequence
          Length = 721

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 gcgccgcctcgtcctcggcg 246
           ||||||||||||||||||||
Sbjct: 58  gcgccgcctcgtcctcggcg 39
to top
>dbj|AP002518.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-64D24, complete
             sequence
          Length = 164795

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    aaataacccctctcctcctc 98
             ||||||||||||||||||||
Sbjct: 50729 aaataacccctctcctcctc 50748
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      tgctttgagcttccaaagcc 62
               ||||||||||||||||||||
Sbjct: 7846617 tgctttgagcttccaaagcc 7846598
to top
>gb|CP000220.1| Drosophila melanogaster genomic scaffold 211000022280793
          Length = 328417

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    gctccagttgttgttgttac 422
              ||||||||||||||||||||
Sbjct: 241728 gctccagttgttgttgttac 241747
to top
>gb|AC132111.4| Mus musculus BAC clone RP24-200H19 from 14, complete sequence
          Length = 174164

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     acaaataacccctctcctcc 96
              ||||||||||||||||||||
Sbjct: 136065 acaaataacccctctcctcc 136084



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     acaaataacccctctcctcc 96
              ||||||||||||||||||||
Sbjct: 135924 acaaataacccctctcctcc 135943



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     acaaataacccctctcctcc 96
              ||||||||||||||||||||
Sbjct: 135879 acaaataacccctctcctcc 135898



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     acaaataacccctctcctcc 96
              ||||||||||||||||||||
Sbjct: 135744 acaaataacccctctcctcc 135763



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     acaaataacccctctcctcc 96
              ||||||||||||||||||||
Sbjct: 135648 acaaataacccctctcctcc 135667



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     acaaataacccctctcctcc 96
              ||||||||||||||||||||
Sbjct: 135586 acaaataacccctctcctcc 135605



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     acaaataacccctctcctcc 96
              ||||||||||||||||||||
Sbjct: 135442 acaaataacccctctcctcc 135461
to top
>dbj|AP004550.2| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-60D22, complete
             sequence
          Length = 118465

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    tttgagcttccaaagcccca 65
             ||||||||||||||||||||
Sbjct: 48563 tttgagcttccaaagcccca 48544


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,506,575
Number of Sequences: 3902068
Number of extensions: 3506575
Number of successful extensions: 64785
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63368
Number of HSP's gapped (non-prelim): 1416
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top