| Clone Name | bast48e04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ557138.1|OSA557138 Oryza sativa (japonica cultivar-group) mRNA for oxo-phytodienoic acid reductase (opda gene) Length = 1343 Score = 214 bits (108), Expect = 1e-52 Identities = 171/192 (89%) Strand = Plus / Plus Query: 89 ggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggt 148 |||||||||| |||||||||| |||||||||||||| | |||||||||||||| ||||| Sbjct: 75 ggcgatcccgctgctgacgccgtacaagatggggcagctggagctctcccaccgtgtggt 134 Query: 149 gctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcggt 208 |||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||| Sbjct: 135 gctcgcgccgctcacgcggtgccgctcctacggcaacgtgccgcagccgcacgcggcggt 194 Query: 209 gtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtctc 268 |||||||||||||||||| |||| ||||||| | |||||| |||||||| | | |||| Sbjct: 195 gtactactcgcagcgggcgaccaggggcggcctcctcatcgcggaggccaccgacatctc 254 Query: 269 gcccaccgcgca 280 ||||||||||| Sbjct: 255 ccccaccgcgca 266
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 214 bits (108), Expect = 1e-52 Identities = 171/192 (89%) Strand = Plus / Minus Query: 89 ggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggt 148 |||||||||| |||||||||| |||||||||||||| | |||||||||||||| ||||| Sbjct: 5930363 ggcgatcccgctgctgacgccgtacaagatggggcagctggagctctcccaccgtgtggt 5930304 Query: 149 gctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcggt 208 |||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||| Sbjct: 5930303 gctcgcgccgctcacgcggtgccgctcctacggcaacgtgccgcagccgcacgcggcggt 5930244 Query: 209 gtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtctc 268 |||||||||||||||||| |||| ||||||| | |||||| |||||||| | | |||| Sbjct: 5930243 gtactactcgcagcgggcgaccaggggcggcctcctcatcgcggaggccaccgacatctc 5930184 Query: 269 gcccaccgcgca 280 ||||||||||| Sbjct: 5930183 ccccaccgcgca 5930172 Score = 194 bits (98), Expect = 1e-46 Identities = 170/194 (87%) Strand = Plus / Minus Query: 87 gaggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtg 146 |||||||||||| |||||||||| |||||||||||||| | ||||| |||||||||||| Sbjct: 5925081 gaggcgatcccgctgctgacgccgtacaagatggggcagctggagctgtcccaccgggtg 5925022 Query: 147 gtgctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcg 206 |||||||||||||| ||| ||||||||||||| | | ||||||| ||||||||||| ||| Sbjct: 5925021 gtgctcgcgccgctgacgcggtgccgctcctacggccacgtgccgcagccgcacgccgcg 5924962 Query: 207 gtgtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtc 266 ||||||||||||||||| |||||||| ||||| | |||||| |||||||||| | || Sbjct: 5924961 gtgtactactcgcagcgcgccaccaacggcggactcctcatcgcggaggccactgtcatc 5924902 Query: 267 tcgcccaccgcgca 280 || ||||||||||| Sbjct: 5924901 tcccccaccgcgca 5924888 Score = 161 bits (81), Expect = 1e-36 Identities = 123/137 (89%) Strand = Plus / Minus Query: 112 acaagatggggcagttcgagctctcccaccgggtggtgctcgcgccgctcacgaggtgcc 171 |||||||||||| |||||||||||||||||| ||||||||||||||||| || |||||| Sbjct: 5916637 acaagatggggcggttcgagctctcccaccgcgtggtgctcgcgccgctgactcggtgcc 5916578 Query: 172 gctcctatgccaacgtgccccagccgcacgcggcggtgtactactcgcagcgggccacca 231 ||||||| | | ||||||| ||||||||||||||| |||||||||||||||| ||||||| Sbjct: 5916577 gctcctacgaccacgtgccacagccgcacgcggcgctgtactactcgcagcgcgccacca 5916518 Query: 232 agggcggcttgctcatc 248 | |||||| | |||||| Sbjct: 5916517 atggcggcctcctcatc 5916501 Score = 161 bits (81), Expect = 1e-36 Identities = 153/177 (86%) Strand = Plus / Minus Query: 92 gatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggtgct 151 ||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||||| Sbjct: 5907044 gatcccgctgctgacgccgtacaagatggggcggttcgagctctcccaccgtgtggtgct 5906985 Query: 152 cgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcggtgta 211 ||||||||||||| || ||||||||| | ||||||||| | ||||||||||| | |||| Sbjct: 5906984 cgcgccgctcacgcggaaccgctcctacggcaacgtgccgcggccgcacgcggtgctgta 5906925 Query: 212 ctactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtctc 268 |||| ||||||| ||||||| |||||| | ||| ||| |||||||| |||||||| Sbjct: 5906924 ctacacgcagcgcgccaccagcggcggcctcctcgtcacggaggccaccggcgtctc 5906868 Score = 121 bits (61), Expect = 1e-24 Identities = 127/149 (85%) Strand = Plus / Minus Query: 132 ctctcccaccgggtggtgctcgcgccgctcacgaggtgccgctcctatgccaacgtgccc 191 ||||||||||| ||| ||||||||||| | ||| ||||||| ||||| | ||||||||| Sbjct: 5891131 ctctcccaccgtgtgctgctcgcgccgatgacgcggtgccgatcctacggcaacgtgccg 5891072 Query: 192 cagccgcacgcggcggtgtactactcgcagcgggccaccaagggcggcttgctcatcagc 251 ||||||||||||||| |||||||| ||||||| |||||| |||||| | ||||||| Sbjct: 5891071 cagccgcacgcggcgctgtactacacgcagcgcgccacccgcggcggcctcctcatcacg 5891012 Query: 252 gaggccactggcgtctcgcccaccgcgca 280 |||||||| |||||||| |||||||||| Sbjct: 5891011 gaggccaccggcgtctccgccaccgcgca 5890983 Score = 115 bits (58), Expect = 8e-23 Identities = 121/142 (85%) Strand = Plus / Minus Query: 127 tcgagctctcccaccgggtggtgctcgcgccgctcacgaggtgccgctcctatgccaacg 186 |||| ||||||||||| ||| ||||| ||||| | ||| ||||||| ||||| | ||||| Sbjct: 5896806 tcgatctctcccaccgtgtgctgctctcgccgatgacgcggtgccgatcctacggcaacg 5896747 Query: 187 tgccccagccgcacgcggcggtgtactactcgcagcgggccaccaagggcggcttgctca 246 |||| ||||||||||||||| |||||||| ||||||| ||||||| |||||| | |||| Sbjct: 5896746 tgccgcagccgcacgcggcgctgtactacacgcagcgcgccaccagcggcggcctcctca 5896687 Query: 247 tcagcgaggccactggcgtctc 268 ||| |||||||| |||||||| Sbjct: 5896686 tcacggaggccaccggcgtctc 5896665
>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0024N18 Length = 128739 Score = 214 bits (108), Expect = 1e-52 Identities = 171/192 (89%) Strand = Plus / Minus Query: 89 ggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggt 148 |||||||||| |||||||||| |||||||||||||| | |||||||||||||| ||||| Sbjct: 52015 ggcgatcccgctgctgacgccgtacaagatggggcagctggagctctcccaccgtgtggt 51956 Query: 149 gctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcggt 208 |||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||| Sbjct: 51955 gctcgcgccgctcacgcggtgccgctcctacggcaacgtgccgcagccgcacgcggcggt 51896 Query: 209 gtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtctc 268 |||||||||||||||||| |||| ||||||| | |||||| |||||||| | | |||| Sbjct: 51895 gtactactcgcagcgggcgaccaggggcggcctcctcatcgcggaggccaccgacatctc 51836 Query: 269 gcccaccgcgca 280 ||||||||||| Sbjct: 51835 ccccaccgcgca 51824 Score = 194 bits (98), Expect = 1e-46 Identities = 170/194 (87%) Strand = Plus / Minus Query: 87 gaggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtg 146 |||||||||||| |||||||||| |||||||||||||| | ||||| |||||||||||| Sbjct: 46733 gaggcgatcccgctgctgacgccgtacaagatggggcagctggagctgtcccaccgggtg 46674 Query: 147 gtgctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcg 206 |||||||||||||| ||| ||||||||||||| | | ||||||| ||||||||||| ||| Sbjct: 46673 gtgctcgcgccgctgacgcggtgccgctcctacggccacgtgccgcagccgcacgccgcg 46614 Query: 207 gtgtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtc 266 ||||||||||||||||| |||||||| ||||| | |||||| |||||||||| | || Sbjct: 46613 gtgtactactcgcagcgcgccaccaacggcggactcctcatcgcggaggccactgtcatc 46554 Query: 267 tcgcccaccgcgca 280 || ||||||||||| Sbjct: 46553 tcccccaccgcgca 46540 Score = 161 bits (81), Expect = 1e-36 Identities = 123/137 (89%) Strand = Plus / Minus Query: 112 acaagatggggcagttcgagctctcccaccgggtggtgctcgcgccgctcacgaggtgcc 171 |||||||||||| |||||||||||||||||| ||||||||||||||||| || |||||| Sbjct: 38289 acaagatggggcggttcgagctctcccaccgcgtggtgctcgcgccgctgactcggtgcc 38230 Query: 172 gctcctatgccaacgtgccccagccgcacgcggcggtgtactactcgcagcgggccacca 231 ||||||| | | ||||||| ||||||||||||||| |||||||||||||||| ||||||| Sbjct: 38229 gctcctacgaccacgtgccacagccgcacgcggcgctgtactactcgcagcgcgccacca 38170 Query: 232 agggcggcttgctcatc 248 | |||||| | |||||| Sbjct: 38169 atggcggcctcctcatc 38153 Score = 161 bits (81), Expect = 1e-36 Identities = 153/177 (86%) Strand = Plus / Minus Query: 92 gatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggtgct 151 ||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||||| Sbjct: 28696 gatcccgctgctgacgccgtacaagatggggcggttcgagctctcccaccgtgtggtgct 28637 Query: 152 cgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcggtgta 211 ||||||||||||| || ||||||||| | ||||||||| | ||||||||||| | |||| Sbjct: 28636 cgcgccgctcacgcggaaccgctcctacggcaacgtgccgcggccgcacgcggtgctgta 28577 Query: 212 ctactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtctc 268 |||| ||||||| ||||||| |||||| | ||| ||| |||||||| |||||||| Sbjct: 28576 ctacacgcagcgcgccaccagcggcggcctcctcgtcacggaggccaccggcgtctc 28520 Score = 121 bits (61), Expect = 1e-24 Identities = 127/149 (85%) Strand = Plus / Minus Query: 132 ctctcccaccgggtggtgctcgcgccgctcacgaggtgccgctcctatgccaacgtgccc 191 ||||||||||| ||| ||||||||||| | ||| ||||||| ||||| | ||||||||| Sbjct: 12783 ctctcccaccgtgtgctgctcgcgccgatgacgcggtgccgatcctacggcaacgtgccg 12724 Query: 192 cagccgcacgcggcggtgtactactcgcagcgggccaccaagggcggcttgctcatcagc 251 ||||||||||||||| |||||||| ||||||| |||||| |||||| | ||||||| Sbjct: 12723 cagccgcacgcggcgctgtactacacgcagcgcgccacccgcggcggcctcctcatcacg 12664 Query: 252 gaggccactggcgtctcgcccaccgcgca 280 |||||||| |||||||| |||||||||| Sbjct: 12663 gaggccaccggcgtctccgccaccgcgca 12635 Score = 115 bits (58), Expect = 8e-23 Identities = 121/142 (85%) Strand = Plus / Minus Query: 127 tcgagctctcccaccgggtggtgctcgcgccgctcacgaggtgccgctcctatgccaacg 186 |||| ||||||||||| ||| ||||| ||||| | ||| ||||||| ||||| | ||||| Sbjct: 18458 tcgatctctcccaccgtgtgctgctctcgccgatgacgcggtgccgatcctacggcaacg 18399 Query: 187 tgccccagccgcacgcggcggtgtactactcgcagcgggccaccaagggcggcttgctca 246 |||| ||||||||||||||| |||||||| ||||||| ||||||| |||||| | |||| Sbjct: 18398 tgccgcagccgcacgcggcgctgtactacacgcagcgcgccaccagcggcggcctcctca 18339 Query: 247 tcagcgaggccactggcgtctc 268 ||| |||||||| |||||||| Sbjct: 18338 tcacggaggccaccggcgtctc 18317
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 214 bits (108), Expect = 1e-52 Identities = 171/192 (89%) Strand = Plus / Minus Query: 89 ggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggt 148 |||||||||| |||||||||| |||||||||||||| | |||||||||||||| ||||| Sbjct: 131138 ggcgatcccgctgctgacgccgtacaagatggggcagctggagctctcccaccgtgtggt 131079 Query: 149 gctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcggt 208 |||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||| Sbjct: 131078 gctcgcgccgctcacgcggtgccgctcctacggcaacgtgccgcagccgcacgcggcggt 131019 Query: 209 gtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtctc 268 |||||||||||||||||| |||| ||||||| | |||||| |||||||| | | |||| Sbjct: 131018 gtactactcgcagcgggcgaccaggggcggcctcctcatcgcggaggccaccgacatctc 130959 Query: 269 gcccaccgcgca 280 ||||||||||| Sbjct: 130958 ccccaccgcgca 130947 Score = 194 bits (98), Expect = 1e-46 Identities = 170/194 (87%) Strand = Plus / Minus Query: 87 gaggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtg 146 |||||||||||| |||||||||| |||||||||||||| | ||||| |||||||||||| Sbjct: 125856 gaggcgatcccgctgctgacgccgtacaagatggggcagctggagctgtcccaccgggtg 125797 Query: 147 gtgctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcg 206 |||||||||||||| ||| ||||||||||||| | | ||||||| ||||||||||| ||| Sbjct: 125796 gtgctcgcgccgctgacgcggtgccgctcctacggccacgtgccgcagccgcacgccgcg 125737 Query: 207 gtgtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtc 266 ||||||||||||||||| |||||||| ||||| | |||||| |||||||||| | || Sbjct: 125736 gtgtactactcgcagcgcgccaccaacggcggactcctcatcgcggaggccactgtcatc 125677 Query: 267 tcgcccaccgcgca 280 || ||||||||||| Sbjct: 125676 tcccccaccgcgca 125663 Score = 161 bits (81), Expect = 1e-36 Identities = 123/137 (89%) Strand = Plus / Minus Query: 112 acaagatggggcagttcgagctctcccaccgggtggtgctcgcgccgctcacgaggtgcc 171 |||||||||||| |||||||||||||||||| ||||||||||||||||| || |||||| Sbjct: 117412 acaagatggggcggttcgagctctcccaccgcgtggtgctcgcgccgctgactcggtgcc 117353 Query: 172 gctcctatgccaacgtgccccagccgcacgcggcggtgtactactcgcagcgggccacca 231 ||||||| | | ||||||| ||||||||||||||| |||||||||||||||| ||||||| Sbjct: 117352 gctcctacgaccacgtgccacagccgcacgcggcgctgtactactcgcagcgcgccacca 117293 Query: 232 agggcggcttgctcatc 248 | |||||| | |||||| Sbjct: 117292 atggcggcctcctcatc 117276 Score = 161 bits (81), Expect = 1e-36 Identities = 153/177 (86%) Strand = Plus / Minus Query: 92 gatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggtgct 151 ||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||||| Sbjct: 107819 gatcccgctgctgacgccgtacaagatggggcggttcgagctctcccaccgtgtggtgct 107760 Query: 152 cgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcggtgta 211 ||||||||||||| || ||||||||| | ||||||||| | ||||||||||| | |||| Sbjct: 107759 cgcgccgctcacgcggaaccgctcctacggcaacgtgccgcggccgcacgcggtgctgta 107700 Query: 212 ctactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtctc 268 |||| ||||||| ||||||| |||||| | ||| ||| |||||||| |||||||| Sbjct: 107699 ctacacgcagcgcgccaccagcggcggcctcctcgtcacggaggccaccggcgtctc 107643 Score = 121 bits (61), Expect = 1e-24 Identities = 127/149 (85%) Strand = Plus / Minus Query: 132 ctctcccaccgggtggtgctcgcgccgctcacgaggtgccgctcctatgccaacgtgccc 191 ||||||||||| ||| ||||||||||| | ||| ||||||| ||||| | ||||||||| Sbjct: 91906 ctctcccaccgtgtgctgctcgcgccgatgacgcggtgccgatcctacggcaacgtgccg 91847 Query: 192 cagccgcacgcggcggtgtactactcgcagcgggccaccaagggcggcttgctcatcagc 251 ||||||||||||||| |||||||| ||||||| |||||| |||||| | ||||||| Sbjct: 91846 cagccgcacgcggcgctgtactacacgcagcgcgccacccgcggcggcctcctcatcacg 91787 Query: 252 gaggccactggcgtctcgcccaccgcgca 280 |||||||| |||||||| |||||||||| Sbjct: 91786 gaggccaccggcgtctccgccaccgcgca 91758 Score = 115 bits (58), Expect = 8e-23 Identities = 121/142 (85%) Strand = Plus / Minus Query: 127 tcgagctctcccaccgggtggtgctcgcgccgctcacgaggtgccgctcctatgccaacg 186 |||| ||||||||||| ||| ||||| ||||| | ||| ||||||| ||||| | ||||| Sbjct: 97581 tcgatctctcccaccgtgtgctgctctcgccgatgacgcggtgccgatcctacggcaacg 97522 Query: 187 tgccccagccgcacgcggcggtgtactactcgcagcgggccaccaagggcggcttgctca 246 |||| ||||||||||||||| |||||||| ||||||| ||||||| |||||| | |||| Sbjct: 97521 tgccgcagccgcacgcggcgctgtactacacgcagcgcgccaccagcggcggcctcctca 97462 Query: 247 tcagcgaggccactggcgtctc 268 ||| |||||||| |||||||| Sbjct: 97461 tcacggaggccaccggcgtctc 97440
>dbj|AB122088.1| Oryza sativa (japonica cultivar-group) OPDAR1 gene for 12-oxo-phytodienoic acid reductase, complete cds Length = 2492 Score = 214 bits (108), Expect = 1e-52 Identities = 171/192 (89%) Strand = Plus / Plus Query: 89 ggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggt 148 |||||||||| |||||||||| |||||||||||||| | |||||||||||||| ||||| Sbjct: 1089 ggcgatcccgctgctgacgccgtacaagatggggcagctggagctctcccaccgtgtggt 1148 Query: 149 gctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcggt 208 |||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||| Sbjct: 1149 gctcgcgccgctcacgcggtgccgctcctacggcaacgtgccgcagccgcacgcggcggt 1208 Query: 209 gtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtctc 268 |||||||||||||||||| |||| ||||||| | |||||| |||||||| | | |||| Sbjct: 1209 gtactactcgcagcgggcgaccaggggcggcctcctcatcgcggaggccaccgacatctc 1268 Query: 269 gcccaccgcgca 280 ||||||||||| Sbjct: 1269 ccccaccgcgca 1280
>dbj|AK103067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117P12, full insert sequence Length = 1520 Score = 214 bits (108), Expect = 1e-52 Identities = 171/192 (89%) Strand = Plus / Plus Query: 89 ggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggt 148 |||||||||| |||||||||| |||||||||||||| | |||||||||||||| ||||| Sbjct: 141 ggcgatcccgctgctgacgccgtacaagatggggcagctggagctctcccaccgtgtggt 200 Query: 149 gctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcggt 208 |||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||| Sbjct: 201 gctcgcgccgctcacgcggtgccgctcctacggcaacgtgccgcagccgcacgcggcggt 260 Query: 209 gtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtctc 268 |||||||||||||||||| |||| ||||||| | |||||| |||||||| | | |||| Sbjct: 261 gtactactcgcagcgggcgaccaggggcggcctcctcatcgcggaggccaccgacatctc 320 Query: 269 gcccaccgcgca 280 ||||||||||| Sbjct: 321 ccccaccgcgca 332
>dbj|AB040743.1| Oryza sativa RRJ4 mRNA for 12-oxophytodienoic acid reductase, complete cds Length = 1384 Score = 214 bits (108), Expect = 1e-52 Identities = 171/192 (89%) Strand = Plus / Plus Query: 89 ggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggt 148 |||||||||| |||||||||| |||||||||||||| | |||||||||||||| ||||| Sbjct: 113 ggcgatcccgctgctgacgccgtacaagatggggcagctggagctctcccaccgtgtggt 172 Query: 149 gctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcggt 208 |||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||| Sbjct: 173 gctcgcgccgctcacgcggtgccgctcctacggcaacgtgccgcagccgcacgcggcggt 232 Query: 209 gtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtctc 268 |||||||||||||||||| |||| ||||||| | |||||| |||||||| | | |||| Sbjct: 233 gtactactcgcagcgggcgaccaggggcggcctcctcatcgcggaggccaccgacatctc 292 Query: 269 gcccaccgcgca 280 ||||||||||| Sbjct: 293 ccccaccgcgca 304
>gb|AY921639.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR2) mRNA, complete cds Length = 1409 Score = 200 bits (101), Expect = 2e-48 Identities = 173/197 (87%) Strand = Plus / Plus Query: 84 aaggaggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgg 143 ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 104 aaggaggtgatcccgctgctgacgccttacaagatggggcagttcgagctctctcaccgg 163 Query: 144 gtggtgctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcg 203 |||||||| |||||||| ||||||||||||||||| | ||||||||| ||||| ||||| Sbjct: 164 gtggtgctggcgccgctgacgaggtgccgctcctacggcaacgtgccgcagccacacgcc 223 Query: 204 gcggtgtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggc 263 || ||||||||||||||||| ||||||| ||| ||| |||||||| |||||||| || Sbjct: 224 gccgtgtactactcgcagcgcgccaccaggggtggcctgctcatcgcggaggccacgggg 283 Query: 264 gtctcgcccaccgcgca 280 || ||| |||||||||| Sbjct: 284 gtgtcggccaccgcgca 300
>gb|AY921638.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR1) mRNA, complete cds Length = 1465 Score = 192 bits (97), Expect = 4e-46 Identities = 172/197 (87%) Strand = Plus / Plus Query: 84 aaggaggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgg 143 ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 119 aaggaggtgatcccgctgctgacgccttacaagatggggcagttcgagctctctcaccgg 178 Query: 144 gtggtgctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcg 203 |||||||| |||||||| ||||||||||||||||| | ||||||||| ||||| ||||| Sbjct: 179 gtggtgctggcgccgctgacgaggtgccgctcctacggcaacgtgccgcagccacacgcc 238 Query: 204 gcggtgtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggc 263 || ||||||||||| ||||| ||||||| ||| ||| |||||||| |||||||| || Sbjct: 239 gccgtgtactactcccagcgcgccaccaggggtggcctgctcatcgcggaggccacgggg 298 Query: 264 gtctcgcccaccgcgca 280 || ||| |||||||||| Sbjct: 299 gtgtcggccaccgcgca 315
>gb|AY108052.1| Zea mays PCO079165 mRNA sequence Length = 1489 Score = 192 bits (97), Expect = 4e-46 Identities = 172/197 (87%) Strand = Plus / Plus Query: 84 aaggaggcgatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgg 143 ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 141 aaggaggtgatcccgctgctgacgccttacaagatggggcagttcgagctctctcaccgg 200 Query: 144 gtggtgctcgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcg 203 |||||||| |||||||| ||||||||||||||||| | ||||||||| ||||| ||||| Sbjct: 201 gtggtgctggcgccgctgacgaggtgccgctcctacggcaacgtgccgcagccacacgcc 260 Query: 204 gcggtgtactactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggc 263 || ||||||||||| ||||| ||||||| ||| ||| |||||||| |||||||| || Sbjct: 261 gccgtgtactactcccagcgcgccaccaggggtggcctgctcatcgcggaggccacgggg 320 Query: 264 gtctcgcccaccgcgca 280 || ||| |||||||||| Sbjct: 321 gtgtcggccaccgcgca 337
>dbj|AK105590.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-129-A06, full insert sequence Length = 1311 Score = 161 bits (81), Expect = 1e-36 Identities = 153/177 (86%) Strand = Plus / Plus Query: 92 gatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggtgct 151 ||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||||| Sbjct: 121 gatcccgctgctgacgccgtacaagatggggcggttcgagctctcccaccgtgtggtgct 180 Query: 152 cgcgccgctcacgaggtgccgctcctatgccaacgtgccccagccgcacgcggcggtgta 211 ||||||||||||| || ||||||||| | ||||||||| | ||||||||||| | |||| Sbjct: 181 cgcgccgctcacgcggaaccgctcctacggcaacgtgccgcggccgcacgcggtgctgta 240 Query: 212 ctactcgcagcgggccaccaagggcggcttgctcatcagcgaggccactggcgtctc 268 |||| ||||||| ||||||| |||||| | ||| ||| |||||||| |||||||| Sbjct: 241 ctacacgcagcgcgccaccagcggcggcctcctcgtcacggaggccaccggcgtctc 297
>dbj|AK104256.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-E01, full insert sequence Length = 1281 Score = 131 bits (66), Expect = 1e-27 Identities = 123/142 (86%) Strand = Plus / Plus Query: 127 tcgagctctcccaccgggtggtgctcgcgccgctcacgaggtgccgctcctatgccaacg 186 |||| ||||||||||||||||||||| ||||| | ||| ||||||| ||||| | ||||| Sbjct: 153 tcgatctctcccaccgggtggtgctctcgccgatgacgcggtgccgatcctacggcaacg 212 Query: 187 tgccccagccgcacgcggcggtgtactactcgcagcgggccaccaagggcggcttgctca 246 |||| ||||||||||||||| |||||||| ||||||| ||||||| |||||| | |||| Sbjct: 213 tgccgcagccgcacgcggcgctgtactacacgcagcgcgccaccagcggcggcctcctca 272 Query: 247 tcagcgaggccactggcgtctc 268 ||| |||||||| |||||||| Sbjct: 273 tcacggaggccaccggcgtctc 294
>dbj|AK104193.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D11, full insert sequence Length = 1281 Score = 131 bits (66), Expect = 1e-27 Identities = 123/142 (86%) Strand = Plus / Plus Query: 127 tcgagctctcccaccgggtggtgctcgcgccgctcacgaggtgccgctcctatgccaacg 186 |||| ||||||||||||||||||||| ||||| | ||| ||||||| ||||| | ||||| Sbjct: 153 tcgatctctcccaccgggtggtgctctcgccgatgacgcggtgccgatcctacggcaacg 212 Query: 187 tgccccagccgcacgcggcggtgtactactcgcagcgggccaccaagggcggcttgctca 246 |||| ||||||||||||||| |||||||| ||||||| ||||||| |||||| | |||| Sbjct: 213 tgccgcagccgcacgcggcgctgtactacacgcagcgcgccaccagcggcggcctcctca 272 Query: 247 tcagcgaggccactggcgtctc 268 ||| |||||||| |||||||| Sbjct: 273 tcacggaggccaccggcgtctc 294
>dbj|AK104039.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G06, full insert sequence Length = 1422 Score = 131 bits (66), Expect = 1e-27 Identities = 123/142 (86%) Strand = Plus / Plus Query: 127 tcgagctctcccaccgggtggtgctcgcgccgctcacgaggtgccgctcctatgccaacg 186 |||| ||||||||||||||||||||| ||||| | ||| ||||||| ||||| | ||||| Sbjct: 148 tcgatctctcccaccgggtggtgctctcgccgatgacgcggtgccgatcctacggcaacg 207 Query: 187 tgccccagccgcacgcggcggtgtactactcgcagcgggccaccaagggcggcttgctca 246 |||| ||||||||||||||| |||||||| ||||||| ||||||| |||||| | |||| Sbjct: 208 tgccgcagccgcacgcggcgctgtactacacgcagcgcgccaccagcggcggcctcctca 267 Query: 247 tcagcgaggccactggcgtctc 268 ||| |||||||| |||||||| Sbjct: 268 tcacggaggccaccggcgtctc 289
>dbj|AK108079.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E09, full insert sequence Length = 1517 Score = 121 bits (61), Expect = 1e-24 Identities = 127/149 (85%) Strand = Plus / Plus Query: 132 ctctcccaccgggtggtgctcgcgccgctcacgaggtgccgctcctatgccaacgtgccc 191 ||||||||||| ||| ||||||||||| | ||| ||||||| ||||| | ||||||||| Sbjct: 236 ctctcccaccgtgtgctgctcgcgccgatgacgcggtgccgatcctacggcaacgtgccg 295 Query: 192 cagccgcacgcggcggtgtactactcgcagcgggccaccaagggcggcttgctcatcagc 251 ||||||||||||||| |||||||| ||||||| |||||| |||||| | ||||||| Sbjct: 296 cagccgcacgcggcgctgtactacacgcagcgcgccacccgcggcggcctcctcatcacg 355 Query: 252 gaggccactggcgtctcgcccaccgcgca 280 |||||||| |||||||| |||||||||| Sbjct: 356 gaggccaccggcgtctccgccaccgcgca 384
>dbj|AK072596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125E21, full insert sequence Length = 1295 Score = 115 bits (58), Expect = 8e-23 Identities = 88/98 (89%) Strand = Plus / Plus Query: 92 gatcccgttgctgacgccccacaagatggggcagttcgagctctcccaccgggtggtgct 151 ||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||||| Sbjct: 122 gatcccgctgctgacgccgtacaagatggggcggttcgagctctcccaccgtgtggtgct 181 Query: 152 cgcgccgctcacgaggtgccgctcctatgccaacgtgc 189 ||||||||||||| || ||||||||| | |||||||| Sbjct: 182 cgcgccgctcacgcggaaccgctcctacggcaacgtgc 219
>dbj|AK061212.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D07, full insert sequence Length = 1434 Score = 115 bits (58), Expect = 8e-23 Identities = 121/142 (85%) Strand = Plus / Plus Query: 127 tcgagctctcccaccgggtggtgctcgcgccgctcacgaggtgccgctcctatgccaacg 186 |||| ||||||||||| ||| ||||| ||||| | ||| ||||||| ||||| | ||||| Sbjct: 153 tcgatctctcccaccgtgtgctgctctcgccgatgacgcggtgccgatcctacggcaacg 212 Query: 187 tgccccagccgcacgcggcggtgtactactcgcagcgggccaccaagggcggcttgctca 246 |||| ||||||||||||||| |||||||| ||||||| ||||||| |||||| | |||| Sbjct: 213 tgccgcagccgcacgcggcgctgtactacacgcagcgcgccaccagcggcggcctcctca 272 Query: 247 tcagcgaggccactggcgtctc 268 ||| |||||||| |||||||| Sbjct: 273 tcacggaggccaccggcgtctc 294
>gb|AY921640.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR3) mRNA, complete cds Length = 1431 Score = 113 bits (57), Expect = 3e-22 Identities = 141/169 (83%) Strand = Plus / Plus Query: 112 acaagatggggcagttcgagctctcccaccgggtggtgctcgcgccgctcacgaggtgcc 171 |||||||||||||| | |||||||||||||| |||||||| |||||| | ||| |||||| Sbjct: 114 acaagatggggcagctggagctctcccaccgcgtggtgctggcgccgatgacgcggtgcc 173 Query: 172 gctcctatgccaacgtgccccagccgcacgcggcggtgtactactcgcagcgggccacca 231 || || | ||||||| ||||||||||| || ||||||||||||||||| |||| || Sbjct: 174 gcgccatcggggacgtgccgcagccgcacgccgccgtgtactactcgcagcgcgccagca 233 Query: 232 agggcggcttgctcatcagcgaggccactggcgtctcgcccaccgcgca 280 ||||||| ||||||||| ||||| ||| || || || |||||||||| Sbjct: 234 ggggcggcgtgctcatcaccgagggcacgggggtgtccgccaccgcgca 282
>emb|AJ557139.1|OSA557139 Oryza sativa (japonica cultivar-group) partial mRNA for oxo-phytodienoic acid reductase (opda2 gene) Length = 1248 Score = 107 bits (54), Expect = 2e-20 Identities = 96/110 (87%) Strand = Plus / Plus Query: 171 cgctcctatgccaacgtgccccagccgcacgcggcggtgtactactcgcagcgggccacc 230 |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct: 1 cgctcctacggcaacgtgccgcagccgcacgcggcggtgtactactcgcagcgggcgacc 60 Query: 231 aagggcggcttgctcatcagcgaggccactggcgtctcgcccaccgcgca 280 | ||||||| | |||||| |||||||| | | |||| ||||||||||| Sbjct: 61 aggggcggcctcctcatcgcggaggccaccgacatctcccccaccgcgca 110
>gb|AY921645.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR8) mRNA, complete cds Length = 1529 Score = 42.1 bits (21), Expect = 0.92 Identities = 39/45 (86%) Strand = Plus / Plus Query: 204 gcggtgtactactcgcagcgggccaccaagggcggcttgctcatc 248 |||| ||||||| |||||||| |||| | ||||||||||||||| Sbjct: 263 gcggagtactacgcgcagcggtccacggaaggcggcttgctcatc 307
>gb|AY921644.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR7) mRNA, complete cds Length = 1594 Score = 42.1 bits (21), Expect = 0.92 Identities = 39/45 (86%) Strand = Plus / Plus Query: 204 gcggtgtactactcgcagcgggccaccaagggcggcttgctcatc 248 |||| ||||||| |||||||| |||| | ||||||||||||||| Sbjct: 399 gcggagtactacgcgcagcggtccacggacggcggcttgctcatc 443
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 cgctcacgaggtgccgctcct 177 ||||||||||||||||||||| Sbjct: 72983 cgctcacgaggtgccgctcct 72963
>ref|XM_506828.1| PREDICTED Oryza sativa (japonica cultivar-group), P0435E12.12 mRNA Length = 1334 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 tgtactactcgcagcgggccaccaagggcggc 239 |||||||||||||| ||||||| || |||||| Sbjct: 276 tgtactactcgcagagggccacaaatggcggc 307
>ref|XM_466236.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1250 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 tgtactactcgcagcgggccaccaagggcggc 239 |||||||||||||| ||||||| || |||||| Sbjct: 190 tgtactactcgcagagggccacaaatggcggc 221
>gb|AC012647.18| Trypanosoma brucei chromosome 2 clone RPCI93-27H14, complete sequence Length = 118437 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 catcatatttgctgcatata 41 |||||||||||||||||||| Sbjct: 42303 catcatatttgctgcatata 42284
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence Length = 1193948 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 catcatatttgctgcatata 41 |||||||||||||||||||| Sbjct: 309239 catcatatttgctgcatata 309258
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 208 tgtactactcgcagcgggccaccaagggcggc 239 |||||||||||||| ||||||| || |||||| Sbjct: 21250147 tgtactactcgcagagggccacaaatggcggc 21250116
>ref|XM_231528.3| PREDICTED: Rattus norvegicus similar to Ca2+-dependent activator for secretion protein 2 (LOC312166), mRNA Length = 4961 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gggcggcttgctcatcagcg 252 |||||||||||||||||||| Sbjct: 1106 gggcggcttgctcatcagcg 1087
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0435E12 Length = 143188 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 208 tgtactactcgcagcgggccaccaagggcggc 239 |||||||||||||| ||||||| || |||||| Sbjct: 32682 tgtactactcgcagagggccacaaatggcggc 32651
>dbj|AK069898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E18, full insert sequence Length = 1334 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 tgtactactcgcagcgggccaccaagggcggc 239 |||||||||||||| ||||||| || |||||| Sbjct: 276 tgtactactcgcagagggccacaaatggcggc 307
>dbj|AK059887.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-B12, full insert sequence Length = 1250 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 208 tgtactactcgcagcgggccaccaagggcggc 239 |||||||||||||| ||||||| || |||||| Sbjct: 190 tgtactactcgcagagggccacaaatggcggc 221
>gb|U45966.1|HGU45966 Hepatitis G virus isolate R10291, complete genome Length = 9103 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 ccaacaagatggtggccaaggagg 90 |||||||||||||| ||||||||| Sbjct: 5721 ccaacaagatggtgaccaaggagg 5698 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,658,669 Number of Sequences: 3902068 Number of extensions: 1658669 Number of successful extensions: 31210 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31113 Number of HSP's gapped (non-prelim): 97 length of query: 280 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 258 effective length of database: 17,147,199,772 effective search space: 4423977541176 effective search space used: 4423977541176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)