ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48d12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1525_A02, complete sequence Length = 93826 Score = 111 bits (56), Expect = 1e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 91 catgtcgtcgcagcggctcgggcgccaccagcgtcgggcgtcgcagagcgtgttcgcgct 150 ||||||||||||||||| ||| || |||||||| ||||||||||||||||||||| ||| Sbjct: 15334 catgtcgtcgcagcggcccggccgtcaccagcggagggcgtcgcagagcgtgttcgtgct 15393 Query: 151 gccggagaacttcgccgccctggacgacgtgccggc 186 ||||| |||||||||| ||| |||||||||||||| Sbjct: 15394 cccggataacttcgccgacctcgacgacgtgccggc 15429
>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05, complete sequence Length = 163130 Score = 111 bits (56), Expect = 1e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 91 catgtcgtcgcagcggctcgggcgccaccagcgtcgggcgtcgcagagcgtgttcgcgct 150 ||||||||||||||||| ||| || |||||||| ||||||||||||||||||||| ||| Sbjct: 109691 catgtcgtcgcagcggcccggccgtcaccagcggagggcgtcgcagagcgtgttcgtgct 109750 Query: 151 gccggagaacttcgccgccctggacgacgtgccggc 186 ||||| |||||||||| ||| |||||||||||||| Sbjct: 109751 cccggataacttcgccgacctcgacgacgtgccggc 109786
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 111 bits (56), Expect = 1e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 91 catgtcgtcgcagcggctcgggcgccaccagcgtcgggcgtcgcagagcgtgttcgcgct 150 ||||||||||||||||| ||| || |||||||| ||||||||||||||||||||| ||| Sbjct: 22520284 catgtcgtcgcagcggcccggccgtcaccagcggagggcgtcgcagagcgtgttcgtgct 22520343 Query: 151 gccggagaacttcgccgccctggacgacgtgccggc 186 ||||| |||||||||| ||| |||||||||||||| Sbjct: 22520344 cccggataacttcgccgacctcgacgacgtgccggc 22520379 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 |||| ||||| ||||||||||||||||| Sbjct: 25946592 ggcgacggcgaggccgagcagcagcagc 25946565
>dbj|AK107796.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D10, full insert sequence Length = 663 Score = 111 bits (56), Expect = 1e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 91 catgtcgtcgcagcggctcgggcgccaccagcgtcgggcgtcgcagagcgtgttcgcgct 150 ||||||||||||||||| ||| || |||||||| ||||||||||||||||||||| ||| Sbjct: 91 catgtcgtcgcagcggcccggccgtcaccagcggagggcgtcgcagagcgtgttcgtgct 150 Query: 151 gccggagaacttcgccgccctggacgacgtgccggc 186 ||||| |||||||||| ||| |||||||||||||| Sbjct: 151 cccggataacttcgccgacctcgacgacgtgccggc 186
>ref|XM_475375.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 285 Score = 109 bits (55), Expect = 4e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 92 atgtcgtcgcagcggctcgggcgccaccagcgtcgggcgtcgcagagcgtgttcgcgctg 151 |||||||||||||||| ||| || |||||||| ||||||||||||||||||||| ||| Sbjct: 1 atgtcgtcgcagcggcccggccgtcaccagcggagggcgtcgcagagcgtgttcgtgctc 60 Query: 152 ccggagaacttcgccgccctggacgacgtgccggc 186 ||||| |||||||||| ||| |||||||||||||| Sbjct: 61 ccggataacttcgccgacctcgacgacgtgccggc 95
>ref|NM_190509.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 276 Score = 75.8 bits (38), Expect = 6e-11 Identities = 56/62 (90%) Strand = Plus / Plus Query: 126 gggcgtcgcagagcgtgttcgcgctgccggagaacttcgccgccctggacgacgtgccgg 185 ||||||||||||||||||||| ||||||||||||||||||| ||| || |||||| ||| Sbjct: 32 gggcgtcgcagagcgtgttcgtgctgccggagaacttcgccagcctcgaggacgtggcgg 91 Query: 186 cg 187 || Sbjct: 92 cg 93
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 6e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 126 gggcgtcgcagagcgtgttcgcgctgccggagaacttcgccgccctggacgacgtgccgg 185 ||||||||||||||||||||| ||||||||||||||||||| ||| || |||||| ||| Sbjct: 35946656 gggcgtcgcagagcgtgttcgtgctgccggagaacttcgccagcctcgaggacgtggcgg 35946597 Query: 186 cg 187 || Sbjct: 35946596 cg 35946595 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gcggcggcgcggccgagcag 238 |||||||||||||||||||| Sbjct: 18474950 gcggcggcgcggccgagcag 18474969
>dbj|AP003231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D11 Length = 138108 Score = 75.8 bits (38), Expect = 6e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 126 gggcgtcgcagagcgtgttcgcgctgccggagaacttcgccgccctggacgacgtgccgg 185 ||||||||||||||||||||| ||||||||||||||||||| ||| || |||||| ||| Sbjct: 45334 gggcgtcgcagagcgtgttcgtgctgccggagaacttcgccagcctcgaggacgtggcgg 45275 Query: 186 cg 187 || Sbjct: 45274 cg 45273
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 2e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 171 tggacgacgtgccggcgtccgacgagcaccg 201 |||||||||||||||||||||||| |||||| Sbjct: 6141436 tggacgacgtgccggcgtccgacgcgcaccg 6141466 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 cgtcgtcgccgggcggcggcg 227 ||||||||||||||||||||| Sbjct: 8663881 cgtcgtcgccgggcggcggcg 8663861 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cgccgccctggacgacgtgccggc 186 ||||||| |||||||||||||||| Sbjct: 14518151 cgccgccatggacgacgtgccggc 14518128
>dbj|AP005818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0009H03 Length = 151685 Score = 54.0 bits (27), Expect = 2e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 171 tggacgacgtgccggcgtccgacgagcaccg 201 |||||||||||||||||||||||| |||||| Sbjct: 29336 tggacgacgtgccggcgtccgacgcgcaccg 29366
>dbj|AK069582.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021A17, full insert sequence Length = 1392 Score = 54.0 bits (27), Expect = 2e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 171 tggacgacgtgccggcgtccgacgagcaccg 201 |||||||||||||||||||||||| |||||| Sbjct: 467 tggacgacgtgccggcgtccgacgcgcaccg 497
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 46.1 bits (23), Expect = 0.053 Identities = 23/23 (100%) Strand = Plus / Plus Query: 220 cggcggcgcggccgagcagcagc 242 ||||||||||||||||||||||| Sbjct: 3134490 cggcggcgcggccgagcagcagc 3134512
>gb|AY380558.1| Burkholderia multivorans E243 type III secretion gene cluster, partial sequence Length = 26962 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 206 gcgtcgtcgccgggcggcggcg 227 |||||||||||||||||||||| Sbjct: 6128 gcgtcgtcgccgggcggcggcg 6107
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 222 gcggcgcggccgagcagcagcagcgg 247 ||||||||||||||| |||||||||| Sbjct: 710491 gcggcgcggccgagccgcagcagcgg 710466
>ref|XM_468184.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2898 Score = 42.1 bits (21), Expect = 0.82 Identities = 24/25 (96%) Strand = Plus / Plus Query: 205 ggcgtcgtcgccgggcggcggcgcg 229 |||||||||||||||| |||||||| Sbjct: 1320 ggcgtcgtcgccgggctgcggcgcg 1344
>gb|DQ215483.1| Taeniopygia guttata clone 0058P0060D02 2610039C10Rik protein-like mRNA, complete sequence Length = 791 Score = 42.1 bits (21), Expect = 0.82 Identities = 30/33 (90%) Strand = Plus / Plus Query: 214 gccgggcggcggcgcggccgagcagcagcagcg 246 ||||||||||||| |||||||| ||||||||| Sbjct: 161 gccgggcggcggccgggccgagcggcagcagcg 193
>gb|DQ215482.1| Taeniopygia guttata clone 0058P0034A09 2610039C10Rik protein-like mRNA, complete sequence Length = 793 Score = 42.1 bits (21), Expect = 0.82 Identities = 30/33 (90%) Strand = Plus / Plus Query: 214 gccgggcggcggcgcggccgagcagcagcagcg 246 ||||||||||||| |||||||| ||||||||| Sbjct: 150 gccgggcggcggccgggccgagcggcagcagcg 182
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 agagcgtgttcgcgctgccgg 155 ||||||||||||||||||||| Sbjct: 1985535 agagcgtgttcgcgctgccgg 1985515
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 gcggcggcgcggccgagcagc 239 ||||||||||||||||||||| Sbjct: 165615 gcggcggcgcggccgagcagc 165635
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 gcggcggcgcggccgagcagc 239 ||||||||||||||||||||| Sbjct: 78421 gcggcggcgcggccgagcagc 78441
>emb|AJ295237.1|HSA295237 Homo sapiens mRNA for neuronal nicotinic acetylcholine receptor subunit alpha 10 (NACHR alpha 10 gene) Length = 1412 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Minus Query: 218 ggcggcggcgcggccgagcagcagcagcg 246 |||||||||||||| | |||||||||||| Sbjct: 756 ggcggcggcgcggcggcgcagcagcagcg 728
>emb|AJ278118.1|HSA278118 Homo sapiens mRNA for neuronal nicotinic acetylcholine alpha10 subunit (NACHRA10 gene) Length = 1932 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Minus Query: 218 ggcggcggcgcggccgagcagcagcagcg 246 |||||||||||||| | |||||||||||| Sbjct: 756 ggcggcggcgcggcggcgcagcagcagcg 728
>gb|AC154913.4| Ornithorhynchus anatinus BAC clone OABb-535A1 from chromosome unknown, complete sequence Length = 199332 Score = 42.1 bits (21), Expect = 0.82 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 218 ggcggcggcg-cggccgagcagcagcagc 245 |||||||||| |||||||||||||||||| Sbjct: 145157 ggcggcggcggcggccgagcagcagcagc 145129
>gb|AF327367.1|AF327367 Homo sapiens nicotinic acetylcholine receptor subunit alpha 10 (CHRNA10) gene, complete cds Length = 12314 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Minus Query: 218 ggcggcggcgcggccgagcagcagcagcg 246 |||||||||||||| | |||||||||||| Sbjct: 10945 ggcggcggcgcggcggcgcagcagcagcg 10917
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.82 Identities = 24/25 (96%) Strand = Plus / Minus Query: 205 ggcgtcgtcgccgggcggcggcgcg 229 |||||||||||||||| |||||||| Sbjct: 33522835 ggcgtcgtcgccgggctgcggcgcg 33522811
>gb|BC033833.1| Homo sapiens, clone IMAGE:4154817, mRNA Length = 1573 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagcagcagcagcg 246 |||||||||||||| | |||||||||||| Sbjct: 1419 ggcggcggcgcggcggcgcagcagcagcg 1447
>gb|AC060812.15| Homo sapiens chromosome 11, clone RP11-120E20, complete sequence Length = 184106 Score = 42.1 bits (21), Expect = 0.82 Identities = 27/29 (93%) Strand = Plus / Minus Query: 218 ggcggcggcgcggccgagcagcagcagcg 246 |||||||||||||| | |||||||||||| Sbjct: 112782 ggcggcggcgcggcggcgcagcagcagcg 112754
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 gcggcggcgcggccgagcagc 239 ||||||||||||||||||||| Sbjct: 287311 gcggcggcgcggccgagcagc 287331 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 cgtcgccgggcggcggcgcg 229 |||||||||||||||||||| Sbjct: 4839862 cgtcgccgggcggcggcgcg 4839881 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagca 237 |||||||||||||||||||| Sbjct: 2971725 ggcggcggcgcggccgagca 2971744 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gccgggcggcggcgcggccg 233 |||||||||||||||||||| Sbjct: 2551695 gccgggcggcggcgcggccg 2551676
>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete cds Length = 77457 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 cgtcgtcgccgggcggcggcg 227 ||||||||||||||||||||| Sbjct: 53409 cgtcgtcgccgggcggcggcg 53389
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 cgtcgtcgccgggcggcggcg 227 ||||||||||||||||||||| Sbjct: 93677 cgtcgtcgccgggcggcggcg 93657
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0054K20 Length = 153584 Score = 42.1 bits (21), Expect = 0.82 Identities = 24/25 (96%) Strand = Plus / Minus Query: 205 ggcgtcgtcgccgggcggcggcgcg 229 |||||||||||||||| |||||||| Sbjct: 97710 ggcgtcgtcgccgggctgcggcgcg 97686
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 tcgccgccctggacgacgtgc 182 ||||||||||||||||||||| Sbjct: 212874 tcgccgccctggacgacgtgc 212894
>gb|AY308813.1| Canis familiaris homeobox A10 gene, partial sequence Length = 454 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 aggcgtcgtcgccgggcggcggcg 227 ||||| |||||||||||||||||| Sbjct: 238 aggcggcgtcgccgggcggcggcg 261
>ref|XM_517657.1| PREDICTED: Pan troglodytes similar to COUP transcription factor 1 (COUP-TF1) (COUP-TF I) (V-ERBA related protein EAR-3) (LOC461753), mRNA Length = 1287 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 ||||||||||| | |||||||||||||| Sbjct: 100 ggcggcggcgccggcgagcagcagcagc 127
>ref|XM_462663.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 573 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 aggcgtcgtcgccgggcggcggcg 227 ||||| |||||||||||||||||| Sbjct: 191 aggcggcgtcgccgggcggcggcg 214
>ref|NM_005654.4| Homo sapiens nuclear receptor subfamily 2, group F, member 1 (NR2F1), mRNA Length = 3210 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 ||||||||||| | |||||||||||||| Sbjct: 1787 ggcggcggcgccggcgagcagcagcagc 1814
>gb|BC017493.1| Homo sapiens nuclear receptor subfamily 2, group F, member 1, mRNA (cDNA clone MGC:17907 IMAGE:3912075), complete cds Length = 3210 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 ||||||||||| | |||||||||||||| Sbjct: 1787 ggcggcggcgccggcgagcagcagcagc 1814
>gb|AC109596.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1593_C11, complete sequence Length = 112065 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 |||| ||||| ||||||||||||||||| Sbjct: 49719 ggcgacggcgaggccgagcagcagcagc 49692
>gb|BC004154.2| Homo sapiens nuclear receptor subfamily 2, group F, member 1, mRNA (cDNA clone MGC:2388 IMAGE:2824138), complete cds Length = 1658 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 ||||||||||| | |||||||||||||| Sbjct: 188 ggcggcggcgccggcgagcagcagcagc 215
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ggcggcggcgcggccgagca 237 |||||||||||||||||||| Sbjct: 391785 ggcggcggcgcggccgagca 391766
>emb|AJ249440.1|BTA249440 Bos taurus mRNA for transcription factor COUP-TFI (COUP-TFI gene) Length = 2205 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 ||||||||||| | |||||||||||||| Sbjct: 208 ggcggcggcgccggcgagcagcagcagc 235
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cgtcgccgggcggcggcgcggccg 233 |||||||||| ||||||||||||| Sbjct: 98565 cgtcgccggggggcggcgcggccg 98542
>ref|XM_849064.1| PREDICTED: Canis familiaris homeobox A10 (HOXA10), mRNA Length = 2118 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 aggcgtcgtcgccgggcggcggcg 227 ||||| |||||||||||||||||| Sbjct: 1145 aggcggcgtcgccgggcggcggcg 1168
>gb|AC106818.2| Homo sapiens chromosome 5 clone RP11-65F13, complete sequence Length = 180056 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 ||||||||||| | |||||||||||||| Sbjct: 52498 ggcggcggcgccggcgagcagcagcagc 52525
>emb|Z97632.3|HS196E23 Human DNA sequence from clone RP1-196E23 on chromosome Xq26.1-27.2 Contains the VGLL1 gene for vestgial like 1 (Drosophila), the HTATSF1 gene for HIV TAT specific factor 1, the BRS3 gene for bombesin-like receptor 3 and a CpG island, complete sequence Length = 123004 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 gggcggcggcgcggccgagc 236 |||||||||||||||||||| Sbjct: 77072 gggcggcggcgcggccgagc 77053
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 tcgtcgccgggcggcggcgc 228 |||||||||||||||||||| Sbjct: 113028 tcgtcgccgggcggcggcgc 113047
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ggcggcggcgcggccgagca 237 |||||||||||||||||||| Sbjct: 3686274 ggcggcggcgcggccgagca 3686255
>emb|X16155.1|HSCOUPTF Human mRNA for chicken ovalbumin upstream promoter transcription factor (COUP-TF) Length = 1513 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 ||||||||||| | |||||||||||||| Sbjct: 85 ggcggcggcgccggcgagcagcagcagc 112
>emb|X12795.1|HSEAR3 Human v-erbA related ear-3 gene Length = 2511 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 ||||||||||| | |||||||||||||| Sbjct: 577 ggcggcggcgccggcgagcagcagcagc 604
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cgggcggcggcgcggccgag 235 |||||||||||||||||||| Sbjct: 266880 cgggcggcggcgcggccgag 266861
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cgggcggcggcgcggccgag 235 |||||||||||||||||||| Sbjct: 178348 cgggcggcggcgcggccgag 178329
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cgggcggcggcgcggccgag 235 |||||||||||||||||||| Sbjct: 329204 cgggcggcggcgcggccgag 329223
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ggcggcggcgcggccgagca 237 |||||||||||||||||||| Sbjct: 1711046 ggcggcggcgcggccgagca 1711027
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 154 ggagaacttcgccgccctggacgacgtg 181 ||||| |||| ||||||||||||||||| Sbjct: 2347 ggagaccttcaccgccctggacgacgtg 2374
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gcgtcgtcgccgggcggcgg 225 |||||||||||||||||||| Sbjct: 259715 gcgtcgtcgccgggcggcgg 259696 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 cgtcgtcgccgggcggcggcgcgg 230 ||||| |||||||||||||||||| Sbjct: 185919 cgtcggcgccgggcggcggcgcgg 185942
>gb|AE005780.1| Caulobacter crescentus CB15 section 106 of 359 of the complete genome Length = 14131 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ccgggcggcggcgcggccga 234 |||||||||||||||||||| Sbjct: 13377 ccgggcggcggcgcggccga 13358
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cgcggccgagcagcagcagc 245 |||||||||||||||||||| Sbjct: 139181 cgcggccgagcagcagcagc 139200
>tpg|BK000854.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M255, complete sequence Length = 4415 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gcggcggcgcggccgagcag 238 |||||||||||||||||||| Sbjct: 3835 gcggcggcgcggccgagcag 3854
>gb|AC010296.6| Homo sapiens chromosome 5 clone CTB-155H23, complete sequence Length = 134349 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 ccatcacccacattcacccagagc 31 ||||||||||||| |||||||||| Sbjct: 38293 ccatcacccacatccacccagagc 38270
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 cgtcgccgggcggcggcgcggccg 233 ||||||||| |||||||||||||| Sbjct: 3244889 cgtcgccggccggcggcgcggccg 3244866
>gb|AF486645.1| Azotobacter vinelandii unknown gene Length = 2676 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 agaacttcgccgccctggacgacg 179 ||||||||| |||||||||||||| Sbjct: 1232 agaacttcggcgccctggacgacg 1255
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 aggcgtcgtcgccgggcggcggcg 227 ||||| |||||||||||||||||| Sbjct: 22344693 aggcggcgtcgccgggcggcggcg 22344716
>ref|NM_175804.2| Bos taurus nuclear receptor subfamily 2, group F, member 1 (NR2F1), mRNA Length = 2205 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 ||||||||||| | |||||||||||||| Sbjct: 208 ggcggcggcgccggcgagcagcagcagc 235
>gb|AC008431.5|AC008431 Homo sapiens chromosome 5 clone CTC-311C22, complete sequence Length = 118947 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 ccatcacccacattcacccagagc 31 ||||||||||||| |||||||||| Sbjct: 29756 ccatcacccacatccacccagagc 29779
>gb|AC018752.4|AC018752 Homo sapiens chromosome 5 clone CTC-339F2, complete sequence Length = 206691 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 ccatcacccacattcacccagagc 31 ||||||||||||| |||||||||| Sbjct: 29755 ccatcacccacatccacccagagc 29778
>dbj|AP004222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1003B09 Length = 155263 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gcggcggcgcggccgagcag 238 |||||||||||||||||||| Sbjct: 98708 gcggcggcgcggccgagcag 98727
>dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1168H06 Length = 185600 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gcggcggcgcggccgagcag 238 |||||||||||||||||||| Sbjct: 74167 gcggcggcgcggccgagcag 74186
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gcggcggcgcggccgagcag 238 |||||||||||||||||||| Sbjct: 8076839 gcggcggcgcggccgagcag 8076820
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 cgtcgtcgccgggcggcggcgcgg 230 ||||||||||| |||||||||||| Sbjct: 1364060 cgtcgtcgccgagcggcggcgcgg 1364037
>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1294_G06 Length = 115468 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cgccgccctggacgacgtgccggc 186 ||||||| |||||||||||||||| Sbjct: 16440 cgccgccatggacgacgtgccggc 16417
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gccgggcggcggcgcggccg 233 |||||||||||||||||||| Sbjct: 5446211 gccgggcggcggcgcggccg 5446230 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cgggcggcggcgcggccgag 235 |||||||||||||||||||| Sbjct: 1893718 cgggcggcggcgcggccgag 1893699
>emb|AJ336327.1|HSA336327 Homo sapiens genomic sequence surrounding NotI site, clone NL4-CG5R Length = 736 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gccgggcggcggcgcggccg 233 |||||||||||||||||||| Sbjct: 73 gccgggcggcggcgcggccg 54
>emb|AJ336217.1|HSA336217 Homo sapiens genomic sequence surrounding NotI site, clone NL4-DN1C Length = 688 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gccgggcggcggcgcggccg 233 |||||||||||||||||||| Sbjct: 73 gccgggcggcggcgcggccg 54
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ggcgtcgtcgccgggcggcg 224 |||||||||||||||||||| Sbjct: 4519343 ggcgtcgtcgccgggcggcg 4519362
>dbj|AP003469.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1460A1 Length = 138706 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gccgggcggcggcgcggccg 233 |||||||||||||||||||| Sbjct: 61618 gccgggcggcggcgcggccg 61599
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 gccgggcggcggcgcggccgagca 237 |||||||| ||||||||||||||| Sbjct: 201812 gccgggcgtcggcgcggccgagca 201835
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 aggcgtcgtcgccgggcggcggcg 227 ||||| |||||||||||||||||| Sbjct: 95597 aggcggcgtcgccgggcggcggcg 95620
>emb|Z18292.1|BTTRFSQA Bos taurus transcription factor sequence Length = 257 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 ggcggcggcgcggccgagcagcagcagc 245 ||||||||||| | |||||||||||||| Sbjct: 57 ggcggcggcgccggcgagcagcagcagc 84
>dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mRNA for zeaxanthin epoxidase, complete cds Length = 2345 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 aggcgtcgtcgccgggcggcggcg 227 ||||| |||||||||||||||||| Sbjct: 362 aggcggcgtcgccgggcggcggcg 385 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,990,864 Number of Sequences: 3902068 Number of extensions: 1990864 Number of successful extensions: 66695 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 63105 Number of HSP's gapped (non-prelim): 3591 length of query: 251 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 229 effective length of database: 17,147,199,772 effective search space: 3926708747788 effective search space used: 3926708747788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
