ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48d11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107H14, full insert sequence Length = 796 Score = 280 bits (141), Expect = 4e-72 Identities = 213/237 (89%) Strand = Plus / Plus Query: 195 ccatcgtcgcgcgtcggatctgcccctttctggagaagaagacgaaccgggccaacaagg 254 ||||| ||||||| ||||| |||||||| ||| |||||||| ||| |||| ||||||| Sbjct: 237 ccatcctcgcgcgccggatatgccccttcacggacaagaagaccaacagggcgaacaagg 296 Query: 255 tgtccttctccaaccacaagaccaagaagcagcaatttgtgaacctgcagtacaagaagc 314 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 297 tgtccttctcaaaccacaagacgaagaagcagcagtttgtgaacctgcagtacaagaagc 356 Query: 315 tgtggtgggaggccggaaagcgctacgtcaagctcaggctctccaccaaggccctcaaga 374 |||||||||||| || ||||||| ||||||||| | ||||||||||| |||||||||| Sbjct: 357 tgtggtgggaggaaggcaagcgcttcgtcaagctgcgtctctccaccaaagccctcaaga 416 Query: 375 caatcgagaagcacggcctcgacgccgtcgccaagaaggccggcatcgacctcaaca 431 | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 417 ccatcgagaagcatggcctcgacgccgtcgccaaaaaggccggcatcgacctcaaca 473 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 105 cctcgctcgggttcgccacctcgcagctcgcgggcctcagcctcggcctc 154 |||| ||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct: 138 cctctctcggcttcgccacctcgcaactcgccggcctcagcctcggcctc 187
>ref|XM_493864.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 267 Score = 268 bits (135), Expect = 2e-68 Identities = 201/223 (90%) Strand = Plus / Plus Query: 209 cggatctgcccctttctggagaagaagacgaaccgggccaacaaggtgtccttctccaac 268 ||||| |||||||| ||| |||||||| ||| |||| ||||||||||||||||| ||| Sbjct: 37 cggatatgccccttcacggacaagaagaccaacagggcgaacaaggtgtccttctcaaac 96 Query: 269 cacaagaccaagaagcagcaatttgtgaacctgcagtacaagaagctgtggtgggaggcc 328 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 97 cacaagacgaagaagcagcagtttgtgaacctgcagtacaagaagctgtggtgggaggaa 156 Query: 329 ggaaagcgctacgtcaagctcaggctctccaccaaggccctcaagacaatcgagaagcac 388 || ||||||| ||||||||| | ||||||||||| ||||||||||| ||||||||||| Sbjct: 157 ggcaagcgcttcgtcaagctgcgtctctccaccaaagccctcaagaccatcgagaagcat 216 Query: 389 ggcctcgacgccgtcgccaagaaggccggcatcgacctcaaca 431 |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 217 ggcctcgacgccgtcgccaaaaaggccggcatcgacctcaaca 259
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 268 bits (135), Expect = 2e-68 Identities = 201/223 (90%) Strand = Plus / Minus Query: 209 cggatctgcccctttctggagaagaagacgaaccgggccaacaaggtgtccttctccaac 268 ||||| |||||||| ||| |||||||| ||| |||| ||||||||||||||||| ||| Sbjct: 66578 cggatatgccccttcacggacaagaagaccaacagggcgaacaaggtgtccttctcaaac 66519 Query: 269 cacaagaccaagaagcagcaatttgtgaacctgcagtacaagaagctgtggtgggaggcc 328 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 66518 cacaagacgaagaagcagcagtttgtgaacctgcagtacaagaagctgtggtgggaggaa 66459 Query: 329 ggaaagcgctacgtcaagctcaggctctccaccaaggccctcaagacaatcgagaagcac 388 || ||||||| ||||||||| | ||||||||||| ||||||||||| ||||||||||| Sbjct: 66458 ggcaagcgcttcgtcaagctgcgtctctccaccaaagccctcaagaccatcgagaagcat 66399 Query: 389 ggcctcgacgccgtcgccaagaaggccggcatcgacctcaaca 431 |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 66398 ggcctcgacgccgtcgccaaaaaggccggcatcgacctcaaca 66356 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 105 cctcgctcgggttcgccacctcgcagctcgcgggcctcagcctcggcctc 154 |||| ||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct: 68306 cctctctcggcttcgccacctcgcaactcgccggcctcagcctcggcctc 68257
>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10, complete sequence Length = 156772 Score = 268 bits (135), Expect = 2e-68 Identities = 201/223 (90%) Strand = Plus / Minus Query: 209 cggatctgcccctttctggagaagaagacgaaccgggccaacaaggtgtccttctccaac 268 ||||| |||||||| ||| |||||||| ||| |||| ||||||||||||||||| ||| Sbjct: 66578 cggatatgccccttcacggacaagaagaccaacagggcgaacaaggtgtccttctcaaac 66519 Query: 269 cacaagaccaagaagcagcaatttgtgaacctgcagtacaagaagctgtggtgggaggcc 328 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 66518 cacaagacgaagaagcagcagtttgtgaacctgcagtacaagaagctgtggtgggaggaa 66459 Query: 329 ggaaagcgctacgtcaagctcaggctctccaccaaggccctcaagacaatcgagaagcac 388 || ||||||| ||||||||| | ||||||||||| ||||||||||| ||||||||||| Sbjct: 66458 ggcaagcgcttcgtcaagctgcgtctctccaccaaagccctcaagaccatcgagaagcat 66399 Query: 389 ggcctcgacgccgtcgccaagaaggccggcatcgacctcaaca 431 |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 66398 ggcctcgacgccgtcgccaaaaaggccggcatcgacctcaaca 66356 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 105 cctcgctcgggttcgccacctcgcagctcgcgggcctcagcctcggcctc 154 |||| ||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct: 68306 cctctctcggcttcgccacctcgcaactcgccggcctcagcctcggcctc 68257
>gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0098I11, complete sequence Length = 122970 Score = 268 bits (135), Expect = 2e-68 Identities = 201/223 (90%) Strand = Plus / Minus Query: 209 cggatctgcccctttctggagaagaagacgaaccgggccaacaaggtgtccttctccaac 268 ||||| |||||||| ||| |||||||| ||| |||| ||||||||||||||||| ||| Sbjct: 75965 cggatatgccccttcacggacaagaagaccaacagggcgaacaaggtgtccttctcaaac 75906 Query: 269 cacaagaccaagaagcagcaatttgtgaacctgcagtacaagaagctgtggtgggaggcc 328 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 75905 cacaagacgaagaagcagcagtttgtgaacctgcagtacaagaagctgtggtgggaggaa 75846 Query: 329 ggaaagcgctacgtcaagctcaggctctccaccaaggccctcaagacaatcgagaagcac 388 || ||||||| ||||||||| | ||||||||||| ||||||||||| ||||||||||| Sbjct: 75845 ggcaagcgcttcgtcaagctgcgtctctccaccaaagccctcaagaccatcgagaagcat 75786 Query: 389 ggcctcgacgccgtcgccaagaaggccggcatcgacctcaaca 431 |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 75785 ggcctcgacgccgtcgccaaaaaggccggcatcgacctcaaca 75743 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 105 cctcgctcgggttcgccacctcgcagctcgcgggcctcagcctcggcctc 154 |||| ||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct: 77693 cctctctcggcttcgccacctcgcaactcgccggcctcagcctcggcctc 77644
>gb|AY104997.1| Zea mays PCO079200 mRNA sequence Length = 593 Score = 266 bits (134), Expect = 6e-68 Identities = 185/202 (91%) Strand = Plus / Plus Query: 230 aagaagacgaaccgggccaacaaggtgtccttctccaaccacaagaccaagaagcagcaa 289 ||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| Sbjct: 269 aagaagacgaaccgggcgaacaaggtgtcgttttccaaccacaagacgaagaagcagcag 328 Query: 290 tttgtgaacctgcagtacaagaagctgtggtgggaggccggaaagcgctacgtcaagctc 349 || |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct: 329 ttcgtgaacctgcagtacaagaagctgtggtgggaggccggcaagcgcttcgtcaagctg 388 Query: 350 aggctctccaccaaggccctcaagacaatcgagaagcacggcctcgacgccgtcgccaag 409 | || |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 389 cgcctttccaccaaggccctcaagaccatcgagaagcacggcctcgacgccgtcgcgcgc 448 Query: 410 aaggccggcatcgacctcaaca 431 |||||||||||||||||||||| Sbjct: 449 aaggccggcatcgacctcaaca 470
>dbj|AK059567.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H10, full insert sequence Length = 487 Score = 220 bits (111), Expect = 3e-54 Identities = 150/163 (92%) Strand = Plus / Plus Query: 269 cacaagaccaagaagcagcaatttgtgaacctgcagtacaagaagctgtggtgggaggcc 328 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1 cacaagacgaagaagcagcagtttgtgaacctgcagtacaagaagctgtggtgggaggaa 60 Query: 329 ggaaagcgctacgtcaagctcaggctctccaccaaggccctcaagacaatcgagaagcac 388 || ||||||| ||||||||| | ||||||||||| ||||||||||| ||||||||||| Sbjct: 61 ggcaagcgcttcgtcaagctgcgtctctccaccaaagccctcaagaccatcgagaagcat 120 Query: 389 ggcctcgacgccgtcgccaagaaggccggcatcgacctcaaca 431 |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 121 ggcctcgacgccgtcgccaaaaaggccggcatcgacctcaaca 163
>gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence Length = 107527 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 248 aacaaggtgtccttctccaaccacaagaccaagaagcagcaatttgtgaacctgcagtac 307 ||||| ||||| ||||| |||||||||||||||||| |||||| || ||| |||||||| Sbjct: 22694 aacaaagtgtcattctctaaccacaagaccaagaagttgcaattcgtcaacttgcagtac 22753 Query: 308 aa 309 || Sbjct: 22754 aa 22755
>emb|X68078.1|NTRPCL28 N.tabacum mRNA for chloroplast ribosomal protein CL28 Length = 671 Score = 52.0 bits (26), Expect = 0.002 Identities = 92/114 (80%) Strand = Plus / Plus Query: 229 gaagaagacgaaccgggccaacaaggtgtccttctccaaccacaagaccaagaagcagca 288 ||||||| | ||| |||| |||||||| || ||| ||||||||||| || ||| ||| Sbjct: 302 gaagaagtccaacagggcaaacaaggtctctcactcaaaccacaagacaaaaaagttgca 361 Query: 289 atttgtgaacctgcagtacaagaagctgtggtgggaggccggaaagcgctacgt 342 |||||| ||||| || ||||||| | ||||||||||| || ||||||||||| Sbjct: 362 atttgtaaaccttcaatacaagagaatttggtgggaggcaggcaagcgctacgt 415
>gb|AY212800.1| Uncultured bacterium clone XIVA3 Uvs061 (uvs061), Uvs062 (uvs062), Uvs063 (uvs063), Uvs064 (uvs064), Uvs065 (uvs065), Uvs066 (uvs066), Uvs067 (uvs067), Uvs068 (uvs068), Uvs069, ActP (actP), AguC (aguC), Uvs072 (uvs072), AguD (aguD), AguE (aguE), Uvs075 (uvs075), Uvs076 (uvs076), Uvs077 (uvs077), Uvs078 (uvs078), Uvs079 (uvs079), Uvs080 (uvs080), AguF (aguF), and Uvs082 (uvs082) genes, complete cds Length = 38120 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Minus Query: 396 acgccgtcgccaagaaggccggcatcga 423 ||||||| |||||||||||||||||||| Sbjct: 14460 acgccgtggccaagaaggccggcatcga 14433
>gb|AC160639.2| Mus musculus BAC clone RP23-103I12 from chromosome 14, complete sequence Length = 195224 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Minus Query: 256 gtccttctccaaccacaagaccaa 279 |||||||||||||||||||||||| Sbjct: 191826 gtccttctccaaccacaagaccaa 191803
>gb|AC134575.3| Mus musculus BAC clone RP24-67I21 from chromosome 14, complete sequence Length = 172103 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Minus Query: 256 gtccttctccaaccacaagaccaa 279 |||||||||||||||||||||||| Sbjct: 66537 gtccttctccaaccacaagaccaa 66514
>gb|BC074110.1| Xenopus laevis MGC81777 protein, mRNA (cDNA clone MGC:81777 IMAGE:6866454), complete cds Length = 1520 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Minus Query: 170 tccatccccaccaacaccaagaacaccatc 199 ||||||||||||||||| || ||||||||| Sbjct: 720 tccatccccaccaacacaaacaacaccatc 691
>ref|XM_467348.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1067 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cctcagcctcggcctcacctccacc 163 ||||| ||||||||||||||||||| Sbjct: 586 cctcatcctcggcctcacctccacc 610
>ref|XM_507521.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1218_D07.23 mRNA Length = 1287 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cctcagcctcggcctcacctccacc 163 ||||| ||||||||||||||||||| Sbjct: 803 cctcatcctcggcctcacctccacc 827
>ref|XM_506926.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1218_D07.23 mRNA Length = 1349 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cctcagcctcggcctcacctccacc 163 ||||| ||||||||||||||||||| Sbjct: 883 cctcatcctcggcctcacctccacc 907
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 403 cgccaagaaggccggcatcgacctc 427 |||| |||||||||||||||||||| Sbjct: 142466 cgccgagaaggccggcatcgacctc 142490
>gb|AC009108.10| Homo sapiens chromosome 16 clone RP11-463O9, complete sequence Length = 168656 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gtcaagctcaggctctccacc 361 ||||||||||||||||||||| Sbjct: 60065 gtcaagctcaggctctccacc 60045
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 cgccaagaaggccggcatcga 423 ||||||||||||||||||||| Sbjct: 257273 cgccaagaaggccggcatcga 257293
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 aagcgctacgtcaagctcagg 352 ||||||||||||||||||||| Sbjct: 178958 aagcgctacgtcaagctcagg 178938
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 aaccgggccaacaaggtgtcc 259 ||||||||||||||||||||| Sbjct: 3942353 aaccgggccaacaaggtgtcc 3942333
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 389 ggcctcgacgccgtcgccaagaaggccgg 417 ||||||| ||||| ||||||||||||||| Sbjct: 1871500 ggcctcgccgccgccgccaagaaggccgg 1871528
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 tgcagtacaagaagctgtggt 320 ||||||||||||||||||||| Sbjct: 19426286 tgcagtacaagaagctgtggt 19426266
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 tccgcagcaacgccaacgccgcctc 108 ||||||||||||||| ||||||||| Sbjct: 7193113 tccgcagcaacgccatcgccgcctc 7193089 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 gcctcacctccaccgcggtctcca 173 ||||||||||||| |||||||||| Sbjct: 14735490 gcctcacctccacggcggtctcca 14735467
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cctcagcctcggcctcacctccacc 163 ||||| ||||||||||||||||||| Sbjct: 28998240 cctcatcctcggcctcacctccacc 28998264
>gb|AY957387.1| Pseudomonas stutzeri DnrE (dnrE) gene, complete cds; NarL-like (narL) and NarX-like (narX) genes, complete sequence; NarK (narK), NarM (narM), NarG (narG), NarH (narH), NarJ (narJ), and NarI (narI) genes, complete cds; and unknown gene Length = 15150 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 cgccaagaaggccggcatcga 423 ||||||||||||||||||||| Sbjct: 11656 cgccaagaaggccggcatcga 11676
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 ggcctcagcctcggcctcacc 157 ||||||||||||||||||||| Sbjct: 902935 ggcctcagcctcggcctcacc 902915 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 ggcctcagcctcggcctcacc 157 ||||||||||||||||||||| Sbjct: 219336 ggcctcagcctcggcctcacc 219316
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0409B11 Length = 168354 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 tgcagtacaagaagctgtggt 320 ||||||||||||||||||||| Sbjct: 115824 tgcagtacaagaagctgtggt 115804
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 agaaggccggcatcgacctca 428 ||||||||||||||||||||| Sbjct: 4649822 agaaggccggcatcgacctca 4649842
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 378 tcgagaagcacggcctcgacg 398 ||||||||||||||||||||| Sbjct: 1053765 tcgagaagcacggcctcgacg 1053745 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 402 tcgccaagaaggccggcatcgacctcaa 429 |||||| |||||||||||||||| |||| Sbjct: 1834224 tcgccaggaaggccggcatcgacatcaa 1834197
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0068B06 Length = 143712 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 tccgcagcaacgccaacgccgcctc 108 ||||||||||||||| ||||||||| Sbjct: 70524 tccgcagcaacgccatcgccgcctc 70500
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0052G07 Length = 156207 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 tccgcagcaacgccaacgccgcctc 108 ||||||||||||||| ||||||||| Sbjct: 28117 tccgcagcaacgccatcgccgcctc 28093
>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0724B10 Length = 169143 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cctcagcctcggcctcacctccacc 163 ||||| ||||||||||||||||||| Sbjct: 44405 cctcatcctcggcctcacctccacc 44429
>dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1218_D07 Length = 114511 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cctcagcctcggcctcacctccacc 163 ||||| ||||||||||||||||||| Sbjct: 81298 cctcatcctcggcctcacctccacc 81322
>emb|Y00142.1|SLXP55 Streptomyces lividans DNA for xp55 protein and p49 protein Length = 4540 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 cgccaagaaggccggcatcga 423 ||||||||||||||||||||| Sbjct: 3677 cgccaagaaggccggcatcga 3697
>dbj|AK105992.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H02, full insert sequence Length = 1349 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cctcagcctcggcctcacctccacc 163 ||||| ||||||||||||||||||| Sbjct: 883 cctcatcctcggcctcacctccacc 907
>dbj|AK071752.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113K24, full insert sequence Length = 1066 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cctcagcctcggcctcacctccacc 163 ||||| ||||||||||||||||||| Sbjct: 585 cctcatcctcggcctcacctccacc 609
>dbj|AK060227.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G11, full insert sequence Length = 1287 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 cctcagcctcggcctcacctccacc 163 ||||| ||||||||||||||||||| Sbjct: 803 cctcatcctcggcctcacctccacc 827
>dbj|AB017138.1| Pseudomonas putida malonate decarboxylase gene cluster (mdcA, mdcB, mdcC, mdcD, mdcE, mdcG, mdcH, mdcL and mdcM genes), complete cds Length = 8090 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 100 cgccgcctcgctcgggttcgccacctcgc 128 |||||||||| |||||| ||||||||||| Sbjct: 249 cgccgcctcgatcgggtacgccacctcgc 277
>ref|NM_128905.2| Arabidopsis thaliana structural constituent of ribosome AT2G33450 mRNA, complete cds Length = 626 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 ttctccaaccacaagaccaagaag 283 ||||| |||||||||||||||||| Sbjct: 294 ttctctaaccacaagaccaagaag 317
>ref|XM_421335.1| PREDICTED: Gallus gallus similar to KIAA1409 (LOC423426), mRNA Length = 7074 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 cagcaatttgtgaacctgca 303 |||||||||||||||||||| Sbjct: 6454 cagcaatttgtgaacctgca 6435
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 atcgagaagcacggcctcgacgcc 400 ||||||||||||||| |||||||| Sbjct: 2648003 atcgagaagcacggcatcgacgcc 2647980
>ref|XM_755410.1| Ustilago maydis 521 hypothetical protein (UM04356.1) partial mRNA Length = 9195 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 tccgcagcaacgccaacgcc 103 |||||||||||||||||||| Sbjct: 5450 tccgcagcaacgccaacgcc 5469
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 cgccaagaaggccggcatcg 422 |||||||||||||||||||| Sbjct: 2294308 cgccaagaaggccggcatcg 2294327
>ref|XM_388604.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08428.1) partial mRNA Length = 1422 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 ccaacaccaagaacaccatcgtcg 203 |||||||||||| ||||||||||| Sbjct: 92 ccaacaccaagatcaccatcgtcg 115
>gb|AC116651.6| Homo sapiens BAC clone RP11-799M12 from 4, complete sequence Length = 61067 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 aagaccaagaagcagcaatt 291 |||||||||||||||||||| Sbjct: 54923 aagaccaagaagcagcaatt 54942
>ref|XM_541567.2| PREDICTED: Canis familiaris similar to F28C1.3a (LOC484452), mRNA Length = 2583 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gcctcggcctcacctccacc 163 |||||||||||||||||||| Sbjct: 1574 gcctcggcctcacctccacc 1593
>gb|AC149580.19| Medicago truncatula clone mth2-123f14, complete sequence Length = 123565 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 aagaccaagaagcagcaatttgtg 295 |||||||||||||||||| ||||| Sbjct: 46484 aagaccaagaagcagcaagttgtg 46461
>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence Length = 139330 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 aagaccaagaagcagcaatttgtg 295 |||||||||||||||||| ||||| Sbjct: 107266 aagaccaagaagcagcaagttgtg 107289
>emb|AL354853.12| Human DNA sequence from clone RP11-555F9 on chromosome 9q22.1-22.33 Contains the 5' end of a novel gene and the 3' end of a novel gene, complete sequence Length = 176422 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 agcatatcttcttgatttcc 473 |||||||||||||||||||| Sbjct: 51577 agcatatcttcttgatttcc 51558
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 402 tcgccaagaaggccggcatcgacctcaa 429 ||||||||||||||||| ||||| |||| Sbjct: 129432 tcgccaagaaggccggcctcgacgtcaa 129405
>emb|AL596163.1| Listeria innocua Clip11262 complete genome, segment 1/12 Length = 231450 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 aagaagcagcaatttgtgaa 297 |||||||||||||||||||| Sbjct: 215268 aagaagcagcaatttgtgaa 215287
>gb|AE005812.1| Caulobacter crescentus CB15 section 138 of 359 of the complete genome Length = 10602 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tgcccgccgccgccagggct 76 |||||||||||||||||||| Sbjct: 2609 tgcccgccgccgccagggct 2590
>gb|AY114618.1| Arabidopsis thaliana putative chloroplast 50S ribosomal protein L28 (At2g33450) mRNA, complete cds Length = 484 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 ttctccaaccacaagaccaagaag 283 ||||| |||||||||||||||||| Sbjct: 253 ttctctaaccacaagaccaagaag 276
>gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete sequence Length = 126875 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 aagaccaagaagcagcaatttgtg 295 |||||||||||||||||| ||||| Sbjct: 61425 aagaccaagaagcagcaagttgtg 61448
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 atgcccgccgccgccagggc 75 |||||||||||||||||||| Sbjct: 2098641 atgcccgccgccgccagggc 2098622
>gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete sequence Length = 152593 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 ttctccaaccacaagaccaagaag 283 ||||| |||||||||||||||||| Sbjct: 78057 ttctctaaccacaagaccaagaag 78080
>gb|AY072373.1| Arabidopsis thaliana putative chloroplast 50S ribosomal protein L28 (At2g33450) mRNA, complete cds Length = 617 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 ttctccaaccacaagaccaagaag 283 ||||| |||||||||||||||||| Sbjct: 291 ttctctaaccacaagaccaagaag 314
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ggtctccatccccaccaaca 185 |||||||||||||||||||| Sbjct: 914374 ggtctccatccccaccaaca 914355
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ttcgccacctcgcagctcgc 135 |||||||||||||||||||| Sbjct: 762583 ttcgccacctcgcagctcgc 762602
>gb|AC090058.21| Homo sapiens 12 BAC RP11-112N23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181102 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 caagaagctgtggtgggagg 326 |||||||||||||||||||| Sbjct: 92667 caagaagctgtggtgggagg 92686
>emb|BX819519.1|CNS0A8T8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB86ZD02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 604 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 ttctccaaccacaagaccaagaag 283 ||||| |||||||||||||||||| Sbjct: 274 ttctctaaccacaagaccaagaag 297
>gb|AC153983.7| Mus musculus 6 BAC RP24-479J14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 178303 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 gacctcaacagaaatgagtg 441 |||||||||||||||||||| Sbjct: 96206 gacctcaacagaaatgagtg 96187
>dbj|AB110611.1| Pseudomonas sp. MT-1 nar gene cluster (orf1, orf2, orf3, narL, narX, narK, orf4, narM, narG, narH, narJ, narI, nifM), partial and complete cds Length = 15819 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gccaagaaggccggcatcga 423 |||||||||||||||||||| Sbjct: 11866 gccaagaaggccggcatcga 11885
>gb|AY087094.1| Arabidopsis thaliana clone 31633 mRNA, complete sequence Length = 616 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 ttctccaaccacaagaccaagaag 283 ||||| |||||||||||||||||| Sbjct: 294 ttctctaaccacaagaccaagaag 317
>ref|XM_218387.3| PREDICTED: Rattus norvegicus similar to F-box only protein 6 (F-box/G-domain protein 2) (predicted) (LOC292755), mRNA Length = 801 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 280 gaagcagcaatttgtgaacctgcagtacaagaagctgtgg 319 |||| |||||| ||||||||||| | ||||||||||||| Sbjct: 435 gaaggagcaatgtgtgaacctgctggccaagaagctgtgg 474
>dbj|AP004804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0680B05 Length = 138741 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 gcctcacctccaccgcggtctcca 173 ||||||||||||| |||||||||| Sbjct: 121357 gcctcacctccacggcggtctcca 121334
>dbj|AP004802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0640D01 Length = 164996 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 gcctcacctccaccgcggtctcca 173 ||||||||||||| |||||||||| Sbjct: 46574 gcctcacctccacggcggtctcca 46551
>dbj|AK109778.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-B10, full insert sequence Length = 1432 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 gcctcacctccaccgcggtctcca 173 ||||||||||||| |||||||||| Sbjct: 513 gcctcacctccacggcggtctcca 490
>dbj|AK105919.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A02, full insert sequence Length = 1139 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 gcctcacctccaccgcggtctcca 173 ||||||||||||| |||||||||| Sbjct: 164 gcctcacctccacggcggtctcca 187
>dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009E01, full insert sequence Length = 1562 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 cctccaccgcggtctccatcccca 179 |||||||||| ||||||||||||| Sbjct: 115 cctccaccgccgtctccatcccca 138
>gb|AY105324.1| Zea mays PCO143177 mRNA sequence Length = 1439 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 agcacggcctcgacgccgtc 403 |||||||||||||||||||| Sbjct: 938 agcacggcctcgacgccgtc 919
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 gcacggcctcgacgccgtcg 404 |||||||||||||||||||| Sbjct: 2670634 gcacggcctcgacgccgtcg 2670653
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 atgcccgccgccgccagggc 75 |||||||||||||||||||| Sbjct: 807564 atgcccgccgccgccagggc 807583
>gb|AC132111.4| Mus musculus BAC clone RP24-200H19 from 14, complete sequence Length = 174164 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 ctcggcctcacctccaccgc 165 |||||||||||||||||||| Sbjct: 124683 ctcggcctcacctccaccgc 124664
>gb|AC153953.2| Mus musculus 10 BAC RP24-394B11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163098 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ctgcccctttctggagaaga 233 |||||||||||||||||||| Sbjct: 74790 ctgcccctttctggagaaga 74771 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,596,585 Number of Sequences: 3902068 Number of extensions: 5596585 Number of successful extensions: 98731 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97357 Number of HSP's gapped (non-prelim): 1373 length of query: 473 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 451 effective length of database: 17,147,199,772 effective search space: 7733387097172 effective search space used: 7733387097172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
