| Clone Name | bast48d09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197848.1| Oryza sativa (japonica cultivar-group) putative AT-Hook DNA-binding protein (OSJNBa0003O19.1), mRNA Length = 1602 Score = 468 bits (236), Expect = e-129 Identities = 401/456 (87%) Strand = Plus / Plus Query: 20 ttcaaaaataatgtccttctcacagcaaggacctcgcacagtttgcattctttcagcaaa 79 ||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||| || Sbjct: 990 ttcaaaaattatggccttctcacagcaaggccctcgcacagtttgcattctctcagcgaa 1049 Query: 80 tggcgcaataagcaatgtaacacttcggcagccagctacatctggtggactggtgactta 139 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1050 tggtgcaataagcaatgtaacacttcggcagccagctacatctggtggacttgtgactta 1109 Query: 140 cgagggtcgatttgagatcatctccctatctggttcattcctgcttgcagaagatggtga 199 ||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| || Sbjct: 1110 tgagggccgatttgagatcatctctctatcaggttctttcctgcttgcagaggatggcga 1169 Query: 200 tactcgtagcaggactggtggattgagcgttgcacttgcaggatctgatggccgggttct 259 ||||| |||||||||||||| |||| || ||||||||||||||||||||||| ||||| Sbjct: 1170 cactcgcagcaggactggtggcctgagtgtcgcacttgcaggatctgatggccgagttct 1229 Query: 260 cggtggatgtgtagctgggcagctaacggctgcgacacctgttcaggttgtcgtggctag 319 ||||||||||||||||| ||| | ||| || || ||||| ||||||||||||||||| Sbjct: 1230 tggtggatgtgtagctggaatgctgatggccgcaacccctgtccaggttgtcgtggctag 1289 Query: 320 tttcatagccgaaggtaaaaaatcaaagcctgctgagccacggaaggttgaaccgatgtc 379 ||||| || |||||||| ||||| ||||| | ||| || ||||||| ||||||||||| Sbjct: 1290 cttcatcgcggaaggtaagaaatcgaagccagtcgagacaaggaaggtcgaaccgatgtc 1349 Query: 380 cgcacctccacagatggccacctatgtgccagctccagtggctagccctccctcggaggg 439 || |||||||||||||| ||||| ||||||||||| ||||| ||||| || |||||||| Sbjct: 1350 agcgcctccacagatggcaacctacgtgccagctccggtggcgagcccgccatcggaggg 1409 Query: 440 tacatccagcgcatcatccgatgactctggcagccc 475 |||||||| | ||| ||||||||||| |||||||| Sbjct: 1410 cacatccagtggatcgtccgatgactcgggcagccc 1445
>dbj|AK058588.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G04, full insert sequence Length = 1517 Score = 468 bits (236), Expect = e-129 Identities = 401/456 (87%) Strand = Plus / Plus Query: 20 ttcaaaaataatgtccttctcacagcaaggacctcgcacagtttgcattctttcagcaaa 79 ||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||| || Sbjct: 504 ttcaaaaattatggccttctcacagcaaggccctcgcacagtttgcattctctcagcgaa 563 Query: 80 tggcgcaataagcaatgtaacacttcggcagccagctacatctggtggactggtgactta 139 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 564 tggtgcaataagcaatgtaacacttcggcagccagctacatctggtggacttgtgactta 623 Query: 140 cgagggtcgatttgagatcatctccctatctggttcattcctgcttgcagaagatggtga 199 ||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| || Sbjct: 624 tgagggccgatttgagatcatctctctatcaggttctttcctgcttgcagaggatggcga 683 Query: 200 tactcgtagcaggactggtggattgagcgttgcacttgcaggatctgatggccgggttct 259 ||||| |||||||||||||| |||| || ||||||||||||||||||||||| ||||| Sbjct: 684 cactcgcagcaggactggtggcctgagtgtcgcacttgcaggatctgatggccgagttct 743 Query: 260 cggtggatgtgtagctgggcagctaacggctgcgacacctgttcaggttgtcgtggctag 319 ||||||||||||||||| ||| | ||| || || ||||| ||||||||||||||||| Sbjct: 744 tggtggatgtgtagctggaatgctgatggccgcaacccctgtccaggttgtcgtggctag 803 Query: 320 tttcatagccgaaggtaaaaaatcaaagcctgctgagccacggaaggttgaaccgatgtc 379 ||||| || |||||||| ||||| ||||| | ||| || ||||||| ||||||||||| Sbjct: 804 cttcatcgcggaaggtaagaaatcgaagccagtcgagacaaggaaggtcgaaccgatgtc 863 Query: 380 cgcacctccacagatggccacctatgtgccagctccagtggctagccctccctcggaggg 439 || |||||||||||||| ||||| ||||||||||| ||||| ||||| || |||||||| Sbjct: 864 agcgcctccacagatggcaacctacgtgccagctccggtggcgagcccgccatcggaggg 923 Query: 440 tacatccagcgcatcatccgatgactctggcagccc 475 |||||||| | ||| ||||||||||| |||||||| Sbjct: 924 cacatccagtggatcgtccgatgactcgggcagccc 959
>dbj|AK102506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095F12, full insert sequence Length = 1140 Score = 460 bits (232), Expect = e-126 Identities = 400/456 (87%) Strand = Plus / Plus Query: 20 ttcaaaaataatgtccttctcacagcaaggacctcgcacagtttgcattctttcagcaaa 79 ||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||| || Sbjct: 147 ttcaaaaattatggccttctcacagcaaggccctcgcacagtttgcattctctcagcgaa 206 Query: 80 tggcgcaataagcaatgtaacacttcggcagccagctacatctggtggactggtgactta 139 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 207 tggtgcaataagcaatgtaacacttcggcagccagctacatctggtggacttgtgactta 266 Query: 140 cgagggtcgatttgagatcatctccctatctggttcattcctgcttgcagaagatggtga 199 ||||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| || Sbjct: 267 tgagggccgatttgagatcatctctctatcaggttctttcctgcttgcagaggatggcga 326 Query: 200 tactcgtagcaggactggtggattgagcgttgcacttgcaggatctgatggccgggttct 259 ||||| |||||||||||||| |||| || ||||||||||| ||||||||||| ||||| Sbjct: 327 cactcgcagcaggactggtggcctgagtgtcgcacttgcagggtctgatggccgagttct 386 Query: 260 cggtggatgtgtagctgggcagctaacggctgcgacacctgttcaggttgtcgtggctag 319 ||||||||||||||||| ||| | ||| || || ||||| ||||||||||||||||| Sbjct: 387 tggtggatgtgtagctggaatgctgatggccgcaacccctgtccaggttgtcgtggctag 446 Query: 320 tttcatagccgaaggtaaaaaatcaaagcctgctgagccacggaaggttgaaccgatgtc 379 ||||| || |||||||| ||||| ||||| | ||| || ||||||| ||||||||||| Sbjct: 447 cttcatcgcggaaggtaagaaatcgaagccagtcgagacaaggaaggtcgaaccgatgtc 506 Query: 380 cgcacctccacagatggccacctatgtgccagctccagtggctagccctccctcggaggg 439 || |||||||||||||| ||||| ||||||||||| ||||| ||||| || |||||||| Sbjct: 507 agcgcctccacagatggcaacctacgtgccagctccggtggcgagcccgccatcggaggg 566 Query: 440 tacatccagcgcatcatccgatgactctggcagccc 475 |||||||| | ||| ||||||||||| |||||||| Sbjct: 567 cacatccagtggatcgtccgatgactcgggcagccc 602
>gb|AY105124.1| Zea mays PCO138363 mRNA sequence Length = 1066 Score = 202 bits (102), Expect = 8e-49 Identities = 294/358 (82%) Strand = Plus / Plus Query: 20 ttcaaaaataatgtccttctcacagcaaggacctcgcacagtttgcattctttcagcaaa 79 ||||||||||||| | |||||||||||||| ||||||||||| ||||| || || || || Sbjct: 53 ttcaaaaataatgacattctcacagcaaggccctcgcacagtctgcatcctctcggcgaa 112 Query: 80 tggcgcaataagcaatgtaacacttcggcagccagctacatctggtggactggtgactta 139 |||||| || ||||| || || |||||||||||||| |||||||||||||| || ||||| Sbjct: 113 tggcgcgattagcaacgttacgcttcggcagccagccacatctggtggactagttactta 172 Query: 140 cgagggtcgatttgagatcatctccctatctggttcattcctgcttgcagaagatggtga 199 ||||| || || ||||| ||||| || || ||||| |||||||| || || |||||||| Sbjct: 173 tgaggggcgtttcgagataatctcgctgtccggttctttcctgctcgcggaggatggtga 232 Query: 200 tactcgtagcaggactggtggattgagcgttgcacttgcaggatctgatggccgggttct 259 ||||| |||||||||||||| |||||||| || || || |||||||| ||||| ||||| Sbjct: 233 cactcgcagcaggactggtggcttgagcgtcgcgctcgcgggatctgacggccgagttct 292 Query: 260 cggtggatgtgtagctgggcagctaacggctgcgacacctgttcaggttgtcgtggctag 319 || || ||||| ||||| ||| | |||||| || ||||| ||||| || |||||||| Sbjct: 293 tggagggtgtgtcgctggaatgcttatggctgcaactcctgtccaggtcgtggtggctag 352 Query: 320 tttcatagccgaaggtaaaaaatcaaagcctgctgagccacggaaggttgaaccgatg 377 ||| || || || || || ||||| ||||| || || | |||||||| ||||||||| Sbjct: 353 ttttatcgcagaggggaagaaatctaagccagccgaagcgcggaaggtcgaaccgatg 410
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 184 bits (93), Expect = 2e-43 Identities = 117/125 (93%) Strand = Plus / Minus Query: 20 ttcaaaaataatgtccttctcacagcaaggacctcgcacagtttgcattctttcagcaaa 79 ||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||| || Sbjct: 22223302 ttcaaaaattatggccttctcacagcaaggccctcgcacagtttgcattctctcagcgaa 22223243 Query: 80 tggcgcaataagcaatgtaacacttcggcagccagctacatctggtggactggtgactta 139 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 22223242 tggtgcaataagcaatgtaacacttcggcagccagctacatctggtggacttgtgactta 22223183 Query: 140 cgagg 144 |||| Sbjct: 22223182 tgagg 22223178 Score = 159 bits (80), Expect = 1e-35 Identities = 122/136 (89%) Strand = Plus / Minus Query: 142 agggtcgatttgagatcatctccctatctggttcattcctgcttgcagaagatggtgata 201 |||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| || | Sbjct: 22222642 agggccgatttgagatcatctctctatcaggttctttcctgcttgcagaggatggcgaca 22222583 Query: 202 ctcgtagcaggactggtggattgagcgttgcacttgcaggatctgatggccgggttctcg 261 |||| |||||||||||||| |||| || ||||||||||||||||||||||| ||||| | Sbjct: 22222582 ctcgcagcaggactggtggcctgagtgtcgcacttgcaggatctgatggccgagttcttg 22222523 Query: 262 gtggatgtgtagctgg 277 |||||||||||||||| Sbjct: 22222522 gtggatgtgtagctgg 22222507 Score = 153 bits (77), Expect = 6e-34 Identities = 149/173 (86%) Strand = Plus / Minus Query: 303 caggttgtcgtggctagtttcatagccgaaggtaaaaaatcaaagcctgctgagccacgg 362 ||||||||||||||||| ||||| || |||||||| ||||| ||||| | ||| || || Sbjct: 22222380 caggttgtcgtggctagcttcatcgcggaaggtaagaaatcgaagccagtcgagacaagg 22222321 Query: 363 aaggttgaaccgatgtccgcacctccacagatggccacctatgtgccagctccagtggct 422 ||||| ||||||||||| || |||||||||||||| ||||| ||||||||||| ||||| Sbjct: 22222320 aaggtcgaaccgatgtcagcgcctccacagatggcaacctacgtgccagctccggtggcg 22222261 Query: 423 agccctccctcggagggtacatccagcgcatcatccgatgactctggcagccc 475 ||||| || |||||||| |||||||| | ||| ||||||||||| |||||||| Sbjct: 22222260 agcccgccatcggagggcacatccagtggatcgtccgatgactcgggcagccc 22222208
>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence Length = 172427 Score = 184 bits (93), Expect = 2e-43 Identities = 117/125 (93%) Strand = Plus / Minus Query: 20 ttcaaaaataatgtccttctcacagcaaggacctcgcacagtttgcattctttcagcaaa 79 ||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||| || Sbjct: 40545 ttcaaaaattatggccttctcacagcaaggccctcgcacagtttgcattctctcagcgaa 40486 Query: 80 tggcgcaataagcaatgtaacacttcggcagccagctacatctggtggactggtgactta 139 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 40485 tggtgcaataagcaatgtaacacttcggcagccagctacatctggtggacttgtgactta 40426 Query: 140 cgagg 144 |||| Sbjct: 40425 tgagg 40421 Score = 159 bits (80), Expect = 1e-35 Identities = 122/136 (89%) Strand = Plus / Minus Query: 142 agggtcgatttgagatcatctccctatctggttcattcctgcttgcagaagatggtgata 201 |||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| || | Sbjct: 39885 agggccgatttgagatcatctctctatcaggttctttcctgcttgcagaggatggcgaca 39826 Query: 202 ctcgtagcaggactggtggattgagcgttgcacttgcaggatctgatggccgggttctcg 261 |||| |||||||||||||| |||| || ||||||||||||||||||||||| ||||| | Sbjct: 39825 ctcgcagcaggactggtggcctgagtgtcgcacttgcaggatctgatggccgagttcttg 39766 Query: 262 gtggatgtgtagctgg 277 |||||||||||||||| Sbjct: 39765 gtggatgtgtagctgg 39750 Score = 153 bits (77), Expect = 6e-34 Identities = 149/173 (86%) Strand = Plus / Minus Query: 303 caggttgtcgtggctagtttcatagccgaaggtaaaaaatcaaagcctgctgagccacgg 362 ||||||||||||||||| ||||| || |||||||| ||||| ||||| | ||| || || Sbjct: 39623 caggttgtcgtggctagcttcatcgcggaaggtaagaaatcgaagccagtcgagacaagg 39564 Query: 363 aaggttgaaccgatgtccgcacctccacagatggccacctatgtgccagctccagtggct 422 ||||| ||||||||||| || |||||||||||||| ||||| ||||||||||| ||||| Sbjct: 39563 aaggtcgaaccgatgtcagcgcctccacagatggcaacctacgtgccagctccggtggcg 39504 Query: 423 agccctccctcggagggtacatccagcgcatcatccgatgactctggcagccc 475 ||||| || |||||||| |||||||| | ||| ||||||||||| |||||||| Sbjct: 39503 agcccgccatcggagggcacatccagtggatcgtccgatgactcgggcagccc 39451
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 184 bits (93), Expect = 2e-43 Identities = 117/125 (93%) Strand = Plus / Minus Query: 20 ttcaaaaataatgtccttctcacagcaaggacctcgcacagtttgcattctttcagcaaa 79 ||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||| || Sbjct: 22235370 ttcaaaaattatggccttctcacagcaaggccctcgcacagtttgcattctctcagcgaa 22235311 Query: 80 tggcgcaataagcaatgtaacacttcggcagccagctacatctggtggactggtgactta 139 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 22235310 tggtgcaataagcaatgtaacacttcggcagccagctacatctggtggacttgtgactta 22235251 Query: 140 cgagg 144 |||| Sbjct: 22235250 tgagg 22235246 Score = 159 bits (80), Expect = 1e-35 Identities = 122/136 (89%) Strand = Plus / Minus Query: 142 agggtcgatttgagatcatctccctatctggttcattcctgcttgcagaagatggtgata 201 |||| ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| || | Sbjct: 22234710 agggccgatttgagatcatctctctatcaggttctttcctgcttgcagaggatggcgaca 22234651 Query: 202 ctcgtagcaggactggtggattgagcgttgcacttgcaggatctgatggccgggttctcg 261 |||| |||||||||||||| |||| || ||||||||||||||||||||||| ||||| | Sbjct: 22234650 ctcgcagcaggactggtggcctgagtgtcgcacttgcaggatctgatggccgagttcttg 22234591 Query: 262 gtggatgtgtagctgg 277 |||||||||||||||| Sbjct: 22234590 gtggatgtgtagctgg 22234575 Score = 153 bits (77), Expect = 6e-34 Identities = 149/173 (86%) Strand = Plus / Minus Query: 303 caggttgtcgtggctagtttcatagccgaaggtaaaaaatcaaagcctgctgagccacgg 362 ||||||||||||||||| ||||| || |||||||| ||||| ||||| | ||| || || Sbjct: 22234448 caggttgtcgtggctagcttcatcgcggaaggtaagaaatcgaagccagtcgagacaagg 22234389 Query: 363 aaggttgaaccgatgtccgcacctccacagatggccacctatgtgccagctccagtggct 422 ||||| ||||||||||| || |||||||||||||| ||||| ||||||||||| ||||| Sbjct: 22234388 aaggtcgaaccgatgtcagcgcctccacagatggcaacctacgtgccagctccggtggcg 22234329 Query: 423 agccctccctcggagggtacatccagcgcatcatccgatgactctggcagccc 475 ||||| || |||||||| |||||||| | ||| ||||||||||| |||||||| Sbjct: 22234328 agcccgccatcggagggcacatccagtggatcgtccgatgactcgggcagccc 22234276
>ref|XM_473713.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1140 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 174 tcattcctgcttgcagaagatggtgatactcgtagcaggactggtggattgagcgttgca 233 ||||| ||||| ||||| ||||| || ||||||||||| || ||||| ||||| || ||| Sbjct: 706 tcatttctgctcgcagaggatggcgacactcgtagcagaacaggtggtttgagtgtggca 765 Query: 234 cttgc 238 ||||| Sbjct: 766 cttgc 770
>gb|AC152498.11| Medicago truncatula clone mth2-38m20, complete sequence Length = 127132 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 42 cagcaaggacctcgcacagtttgcattctttcagcaaatgg 82 |||||||||||||| | || |||||||||||||||||||| Sbjct: 31130 cagcaaggacctcgagctgtatgcattctttcagcaaatgg 31170
>dbj|AB110206.2| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, contig of clone: OsAHP1SE2 and 23C4BG007 Length = 1517 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 174 tcattcctgcttgcagaagatggtgatactcgtagcaggactggtggattgagcgttgca 233 ||||| ||||| ||||| ||||| || ||||||||||| || ||||| ||||| || ||| Sbjct: 708 tcatttctgctcgcagaggatggcgacactcgtagcagaacaggtggtttgagtgtggca 767 Query: 234 cttgc 238 ||||| Sbjct: 768 cttgc 772
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 174 tcattcctgcttgcagaagatggtgatactcgtagcaggactggtggattgagcgttgca 233 ||||| ||||| ||||| ||||| || ||||||||||| || ||||| ||||| || ||| Sbjct: 29788150 tcatttctgctcgcagaggatggcgacactcgtagcagaacaggtggtttgagtgtggca 29788091 Query: 234 cttgc 238 ||||| Sbjct: 29788090 cttgc 29788086 Score = 44.1 bits (22), Expect = 0.41 Identities = 55/66 (83%) Strand = Plus / Minus Query: 20 ttcaaaaataatgtccttctcacagcaaggacctcgcacagtttgcattctttcagcaaa 79 ||||||||||||| | || ||||| ||||| |||||||| ||||| |||||||||| Sbjct: 29789085 ttcaaaaataatggcattttcacaacaaggccctcgcactacatgcataatttcagcaaa 29789026 Query: 80 tggcgc 85 |||||| Sbjct: 29789025 tggcgc 29789020
>dbj|AK070449.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048G11, full insert sequence Length = 1794 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 174 tcattcctgcttgcagaagatggtgatactcgtagcaggactggtggattgagcgttgca 233 ||||| ||||| ||||| ||||| || ||||||||||| || ||||| ||||| || ||| Sbjct: 999 tcatttctgctcgcagaggatggcgacactcgtagcagaacaggtggtttgagtgtggca 1058 Query: 234 cttgc 238 ||||| Sbjct: 1059 cttgc 1063
>dbj|AK060672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-G12, full insert sequence Length = 1677 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 174 tcattcctgcttgcagaagatggtgatactcgtagcaggactggtggattgagcgttgca 233 ||||| ||||| ||||| ||||| || ||||||||||| || ||||| ||||| || ||| Sbjct: 867 tcatttctgctcgcagaggatggcgacactcgtagcagaacaggtggtttgagtgtggca 926 Query: 234 cttgc 238 ||||| Sbjct: 927 cttgc 931
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 174 tcattcctgcttgcagaagatggtgatactcgtagcaggactggtggattgagcgttgca 233 ||||| ||||| ||||| ||||| || ||||||||||| || ||||| ||||| || ||| Sbjct: 69076 tcatttctgctcgcagaggatggcgacactcgtagcagaacaggtggtttgagtgtggca 69017 Query: 234 cttgc 238 ||||| Sbjct: 69016 cttgc 69012 Score = 44.1 bits (22), Expect = 0.41 Identities = 55/66 (83%) Strand = Plus / Minus Query: 20 ttcaaaaataatgtccttctcacagcaaggacctcgcacagtttgcattctttcagcaaa 79 ||||||||||||| | || ||||| ||||| |||||||| ||||| |||||||||| Sbjct: 70011 ttcaaaaataatggcattttcacaacaaggccctcgcactacatgcataatttcagcaaa 69952 Query: 80 tggcgc 85 |||||| Sbjct: 69951 tggcgc 69946
>ref|XM_750182.1| Aspergillus fumigatus Af293 alpha-N-acetylglucosaminidase (Afu2g09410) partial mRNA Length = 2271 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tcggcagccagctacatctgg 124 ||||||||||||||||||||| Sbjct: 305 tcggcagccagctacatctgg 325
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ctattggttcaaaaataatgt 33 ||||||||||||||||||||| Sbjct: 236151 ctattggttcaaaaataatgt 236131
>gb|AC110520.12| Mus musculus chromosome 7, clone RP23-24N16, complete sequence Length = 248540 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 gcttgcagaagatggtgata 201 |||||||||||||||||||| Sbjct: 216577 gcttgcagaagatggtgata 216596
>ref|XM_483314.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1524 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 67 ttctttcagcaaatggcgcaataagcaatgtaacacttcg 106 |||||||||||||||| || ||| |||||||||||||| Sbjct: 645 ttctttcagcaaatggtgccatatcaaatgtaacacttcg 684
>ref|XM_483313.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1434 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 67 ttctttcagcaaatggcgcaataagcaatgtaacacttcg 106 |||||||||||||||| || ||| |||||||||||||| Sbjct: 656 ttctttcagcaaatggtgccatatcaaatgtaacacttcg 695
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 243 tctgatggccgggttctcggtggatgtg 270 |||||||| |||||||||||||| |||| Sbjct: 323093 tctgatggtcgggttctcggtggctgtg 323120
>gb|AC160464.3| Mus musculus chromosome 7, clone RP23-256J14, complete sequence Length = 175716 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcttgcagaagatggtgata 201 |||||||||||||||||||| Sbjct: 168641 gcttgcagaagatggtgata 168622
>gb|AC105133.6| Homo sapiens chromosome 15, clone CTD-2071N1, complete sequence Length = 115519 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 ccacctatgtgccagctcca 416 |||||||||||||||||||| Sbjct: 104433 ccacctatgtgccagctcca 104452
>gb|AC063961.10| Homo sapiens chromosome 10 clone RP11-183E9, complete sequence Length = 147202 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 cacagatggccacctatgtg 407 |||||||||||||||||||| Sbjct: 96194 cacagatggccacctatgtg 96213
>dbj|AK081086.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930083J22 product:unclassifiable, full insert sequence Length = 823 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tccacagatggccacctatg 405 |||||||||||||||||||| Sbjct: 715 tccacagatggccacctatg 696
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 27 ataatgtccttctcacagcaaggacctcgcacagtttgcattct 70 |||||||||||||| ||| | || |||||| | ||||||||||| Sbjct: 2305600 ataatgtccttctcgcagaagggtcctcgctcggtttgcattct 2305643
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 67 ttctttcagcaaatggcgcaataagcaatgtaacacttcg 106 |||||||||||||||| || ||| |||||||||||||| Sbjct: 25399095 ttctttcagcaaatggtgccatatcaaatgtaacacttcg 25399056
>gb|AC110755.6| Homo sapiens BAC clone CTD-2125K8 from 4, complete sequence Length = 38902 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 atgtccttctcacagcaagg 49 |||||||||||||||||||| Sbjct: 7035 atgtccttctcacagcaagg 7054
>dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-284M8, complete sequence Length = 255195 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 tgccagctccagtggctagc 425 |||||||||||||||||||| Sbjct: 136822 tgccagctccagtggctagc 136841
>gb|AC007239.3| Homo sapiens BAC clone RP11-83A12 from 2, complete sequence Length = 139391 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aaataatgtccttctcacag 44 |||||||||||||||||||| Sbjct: 110880 aaataatgtccttctcacag 110861
>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0711H09 Length = 185858 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 67 ttctttcagcaaatggcgcaataagcaatgtaacacttcg 106 |||||||||||||||| || ||| |||||||||||||| Sbjct: 30411 ttctttcagcaaatggtgccatatcaaatgtaacacttcg 30372
>dbj|AK105419.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A12, full insert sequence Length = 1926 Score = 40.1 bits (20), Expect = 6.4 Identities = 119/152 (78%) Strand = Plus / Plus Query: 30 atgtccttctcacagcaaggacctcgcacagtttgcattctttcagcaaatggcgcaata 89 ||||| ||||| ||||| ||| |||| ||| ||| |||| |||||||| ||||| ||| Sbjct: 1061 atgtcattctcccagcatggaactcgtggagtatgcgttctgtcagcaaacggcgccata 1120 Query: 90 agcaatgtaacacttcggcagccagctacatctggtggactggtgacttacgagggtcga 149 ||||| ||||||||||| | ||||| || |||||| || || |||||||| ||| Sbjct: 1121 tcaaatgtgacacttcggcaagctgctacttccggtggaacagtaacatacgagggacga 1180 Query: 150 tttgagatcatctccctatctggttcattcct 181 |||||||| | || || || ||||||||||| Sbjct: 1181 tttgagatactgtcgctgtccggttcattcct 1212
>dbj|AK101825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068A08, full insert sequence Length = 2184 Score = 40.1 bits (20), Expect = 6.4 Identities = 101/128 (78%) Strand = Plus / Plus Query: 30 atgtccttctcacagcaaggacctcgcacagtttgcattctttcagcaaatggcgcaata 89 ||||| ||||| ||||| ||| |||| ||| ||| |||| |||||||| ||||| ||| Sbjct: 1340 atgtcattctcccagcatggaactcgtggagtatgcgttctgtcagcaaacggcgccata 1399 Query: 90 agcaatgtaacacttcggcagccagctacatctggtggactggtgacttacgagggtcga 149 ||||| ||||||||||| | ||||| || |||||| || || |||||||| ||| Sbjct: 1400 tcaaatgtgacacttcggcaagctgctacttccggtggaacagtaacatacgagggacga 1459 Query: 150 tttgagat 157 |||||||| Sbjct: 1460 tttgagat 1467
>dbj|AK067561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112F01, full insert sequence Length = 1526 Score = 40.1 bits (20), Expect = 6.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 67 ttctttcagcaaatggcgcaataagcaatgtaacacttcg 106 |||||||||||||||| || ||| |||||||||||||| Sbjct: 646 ttctttcagcaaatggtgccatatcaaatgtaacacttcg 685
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 27 ataatgtccttctcacagcaaggacctcgcacagtttgcattct 70 |||||||||||||| ||| | || |||||| | ||||||||||| Sbjct: 2305544 ataatgtccttctcgcagaagggtcctcgctcggtttgcattct 2305587
>emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa0023M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 156258 Score = 40.1 bits (20), Expect = 6.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 27 ataatgtccttctcacagcaaggacctcgcacagtttgcattct 70 |||||||||||||| ||| | || |||||| | ||||||||||| Sbjct: 30791 ataatgtccttctcgcagaagggtcctcgctcggtttgcattct 30834
>gb|AC147559.5| Mus musculus BAC clone RP23-391P1 from 3, complete sequence Length = 188305 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tccacagatggccacctatg 405 |||||||||||||||||||| Sbjct: 115325 tccacagatggccacctatg 115306
>gb|AC131724.4| Mus musculus BAC clone RP23-129E9 from 19, complete sequence Length = 225611 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 ttcctgcttgcagaagatgg 196 |||||||||||||||||||| Sbjct: 95833 ttcctgcttgcagaagatgg 95852
>emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on chromosome 4, complete sequence Length = 173824 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 tgccagctccagtggctagc 425 |||||||||||||||||||| Sbjct: 31108 tgccagctccagtggctagc 31089 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,782,860 Number of Sequences: 3902068 Number of extensions: 3782860 Number of successful extensions: 62386 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 62210 Number of HSP's gapped (non-prelim): 166 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)