ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48d07 |
|---|---|
| Clone Library Name | barley_pub |
>NCKX2_RAT (O54701) Sodium/potassium/calcium exchanger 2 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 2) (Retinal cone Na-Ca+K exchanger) Length = 670 Score = 32.0 bits (71), Expect = 0.70 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -1 Query: 360 LPRKQSKQVSTTPLSSS*KP-QSGNVGHSDEAREIRPEMEFDESED 226 LP S +V TP S + +P Q+GN+ HS EA + E E +D Sbjct: 419 LPNSTSTEVEMTPSSEASEPVQNGNLSHSIEAADAPQATETAEEDD 464
>UN112_DROME (Q9VZI3) Unc-112-related protein (Fermitin-1)| Length = 708 Score = 32.0 bits (71), Expect = 0.70 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +2 Query: 77 MGLLSNRVERSEIRPGDHIYTWR 145 +G+ +NR+ R ++ GDHI TWR Sbjct: 615 LGVANNRIMRMDLNTGDHIKTWR 637
>HRSL3_RAT (P53817) HRAS-like suppressor 3 (H-rev 107 protein)| Length = 160 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +2 Query: 110 EIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEV 223 E +PGD I +R +Y SH IYVG V+H E+ Sbjct: 5 EPKPGDLIEIFRPMY--SHWAIYVGDGYVIHLAPPSEI 40
>STAM1_HUMAN (Q92783) Signal transducing adapter molecule 1 (STAM-1)| Length = 539 Score = 30.0 bits (66), Expect = 2.7 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = -1 Query: 393 GTPYSKQ*REPLPR------KQSKQVSTTPLSSS*KPQSGNVGHSDEAREIRPEMEFDES 232 GT +K+ E L + K+ +Q STT + S H E R++R +F+ + Sbjct: 164 GTVANKKEEEDLAKAIELSLKEQRQQSTTLSTLYPSTSSLLTNHQHEGRKVRAIYDFEAA 223 Query: 231 EDSTSFFRV-KWTTLLPPT*IPWWE 160 ED+ F+ + T+L + WW+ Sbjct: 224 EDNELTFKAGEIITVLDDSDPNWWK 248
>NADD_RHOBA (Q7UFN6) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 214 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -2 Query: 314 PAENHSLGMLGTLMKPVRSGQRWSLMNLKIQLP 216 P NH +G+LG PV G W + QLP Sbjct: 8 PQSNHGIGILGGSFDPVHVGHLWMAESALEQLP 40
>HRSL3_PONPY (Q5R611) HRAS-like suppressor 3 (H-rev 107 protein homolog)| Length = 162 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = +2 Query: 110 EIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEV 223 E +PGD I +R Y H IYVG VVH EV Sbjct: 7 EPKPGDLIEIFRPFYR--HWAIYVGDGYVVHLAPPSEV 42
>HRSL3_MOUSE (Q8R3U1) HRAS-like suppressor 3 (H-rev 107 protein)| Length = 162 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +2 Query: 110 EIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEV 223 E +PGD I +R +Y H IYVG V+H E+ Sbjct: 7 EPKPGDLIEIFRPMYR--HWAIYVGDGYVIHLAPPSEI 42
>HRSL3_HUMAN (P53816) HRAS-like suppressor 3 (H-rev 107 protein homolog)| (HREV107-3) (NY-REN-65 antigen) Length = 162 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = +2 Query: 110 EIRPGDHIYTWRAVYAYSHHGIYVGGSKVVHFTRKKEV 223 E +PGD I +R Y H IYVG VVH EV Sbjct: 7 EPKPGDLIEIFRPFYR--HWAIYVGDGYVVHLAPPSEV 42
>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 714 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -1 Query: 87 SSPIAAAAAPQHSPPRCRCGAVA 19 ++P A A+AP H PP C C +A Sbjct: 160 ATPPAPASAPPHLPPACACDVLA 182
>PGDS_BACSU (P96740) Gamma-DL-glutamyl hydrolase precursor (EC 3.4.19.-)| (Poly-gamma-glutamate depolymerase) (PGA depolymerase) Length = 413 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +2 Query: 86 LSNRVERSEIRPGDHIY---TWRAVYAYSHHGIYVGGSKVVHFTRKKEV 223 + +V I+PGD +Y T++ SH GIY G + + +R ++V Sbjct: 220 VGEKVAPQNIKPGDVVYFSNTYKT--GISHAGIYAGAGRFIQASRSEKV 266
>LIPA4_RAT (Q91Z80) Liprin-alpha-4 (Protein tyrosine phosphatase receptor type f| polypeptide-interacting protein alpha-4) (PTPRF-interacting protein alpha-4) (Fragment) Length = 1043 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -2 Query: 329 RHHYRPAENHSLGMLGTLMKPVRSGQRWSLM 237 R +RP ++HS GMLGT + + +G R S + Sbjct: 981 RKRFRPRDHHSGGMLGTSAETLPAGFRVSTL 1011
>ATKB_XANAC (Q8PPC9) Potassium-transporting ATPase B chain (EC 3.6.3.12)| (Potassium-translocating ATPase B chain) (ATP phosphohydrolase [potassium-transporting] B chain) (Potassium-binding and translocating subunit B) Length = 682 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +2 Query: 5 RTRGRATAPHRQRGGECWGAAAAAMGLLSNRVERSEIRPGDHI 133 R RG+A + R R A+G RV +E+RPGD++ Sbjct: 93 RGRGQAASLRRARKDLVARRVETALGGRETRVPAAELRPGDYV 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,125,375 Number of Sequences: 219361 Number of extensions: 1184131 Number of successful extensions: 3654 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3554 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3653 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
