ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48d03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184590.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1542 Score = 343 bits (173), Expect = 3e-91 Identities = 356/417 (85%) Strand = Plus / Plus Query: 3 cagagcctccacgcgcagctcctcacctccggcctccgccccaccgcgggcctctccgtc 62 |||| ||||||||||||||| ||| ||||||||||||||||||| | |||||||||| Sbjct: 136 cagaccctccacgcgcagctactcgagtccggcctccgccccaccgacgacctctccgtc 195 Query: 63 aagatcctcatcctgcacctgcgttgcggctcccaccgcaacgcccgcgcggtgttcgac 122 ||| ||||| |||| ||||| || ||||||||||||| |||||| ||||||||||||||| Sbjct: 196 aagctcctcctcctccacctccgatgcggctcccaccacaacgcgcgcgcggtgttcgac 255 Query: 123 gggatgccccgcccgaccaacgccgcccacaactacctcgtcgccggctacttccgcctg 182 || ||||| |||||| ||||||| ||||||||||||| ||| || |||| ||||||| Sbjct: 256 ggaatgccggcgccgacccacgccgcgcacaactacctcgccgcggggtactcccgcctg 315 Query: 183 ggcctccccggggacgcgctggggatcgtgcggcggctcgcgggctccacggggcggctc 242 |||||||||| ||| ||||| ||||||||| ||||||| ||| | | ||||||| |||| Sbjct: 316 ggcctccccgaggaggcgctcgggatcgtgaggcggctggcgaggtgcacggggaggctg 375 Query: 243 gacgtgttcgcgctctccatggcgctcaagctgtcggcggcgctggcgctgccccgcgcc 302 ||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 376 aacgtgttcgtgctgtcgatggcgctcaagctgtccgcggcgctggcgctgccccgcgcg 435 Query: 303 gcgagggaggtccacgcgcgcgtcgtgaggtccctcgcggcgctcgacgagatcctcttc 362 | ||||||||||||||| ||||| |||||||| ||| | | ||| || |||||||| Sbjct: 436 gtgagggaggtccacgcccgcgtggtgaggtcggtcgtcgagtccgatgacgtcctcttc 495 Query: 363 gcggcgttggttgacgcctacgtgaagaacgcgtcgctgggatacgcccggcgggtg 419 |||||| |||| |||||||||||||||||||||||||| | ||||| ||||||||| Sbjct: 496 gcggcgctggtggacgcctacgtgaagaacgcgtcgcttcggtacgcgcggcgggtg 552
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 343 bits (173), Expect = 3e-91 Identities = 356/417 (85%) Strand = Plus / Plus Query: 3 cagagcctccacgcgcagctcctcacctccggcctccgccccaccgcgggcctctccgtc 62 |||| ||||||||||||||| ||| ||||||||||||||||||| | |||||||||| Sbjct: 14350809 cagaccctccacgcgcagctactcgagtccggcctccgccccaccgacgacctctccgtc 14350868 Query: 63 aagatcctcatcctgcacctgcgttgcggctcccaccgcaacgcccgcgcggtgttcgac 122 ||| ||||| |||| ||||| || ||||||||||||| |||||| ||||||||||||||| Sbjct: 14350869 aagctcctcctcctccacctccgatgcggctcccaccacaacgcgcgcgcggtgttcgac 14350928 Query: 123 gggatgccccgcccgaccaacgccgcccacaactacctcgtcgccggctacttccgcctg 182 || ||||| |||||| ||||||| ||||||||||||| ||| || |||| ||||||| Sbjct: 14350929 ggaatgccggcgccgacccacgccgcgcacaactacctcgccgcggggtactcccgcctg 14350988 Query: 183 ggcctccccggggacgcgctggggatcgtgcggcggctcgcgggctccacggggcggctc 242 |||||||||| ||| ||||| ||||||||| ||||||| ||| | | ||||||| |||| Sbjct: 14350989 ggcctccccgaggaggcgctcgggatcgtgaggcggctggcgaggtgcacggggaggctg 14351048 Query: 243 gacgtgttcgcgctctccatggcgctcaagctgtcggcggcgctggcgctgccccgcgcc 302 ||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 14351049 aacgtgttcgtgctgtcgatggcgctcaagctgtccgcggcgctggcgctgccccgcgcg 14351108 Query: 303 gcgagggaggtccacgcgcgcgtcgtgaggtccctcgcggcgctcgacgagatcctcttc 362 | ||||||||||||||| ||||| |||||||| ||| | | ||| || |||||||| Sbjct: 14351109 gtgagggaggtccacgcccgcgtggtgaggtcggtcgtcgagtccgatgacgtcctcttc 14351168 Query: 363 gcggcgttggttgacgcctacgtgaagaacgcgtcgctgggatacgcccggcgggtg 419 |||||| |||| |||||||||||||||||||||||||| | ||||| ||||||||| Sbjct: 14351169 gcggcgctggtggacgcctacgtgaagaacgcgtcgcttcggtacgcgcggcgggtg 14351225
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 343 bits (173), Expect = 3e-91 Identities = 356/417 (85%) Strand = Plus / Plus Query: 3 cagagcctccacgcgcagctcctcacctccggcctccgccccaccgcgggcctctccgtc 62 |||| ||||||||||||||| ||| ||||||||||||||||||| | |||||||||| Sbjct: 100038 cagaccctccacgcgcagctactcgagtccggcctccgccccaccgacgacctctccgtc 100097 Query: 63 aagatcctcatcctgcacctgcgttgcggctcccaccgcaacgcccgcgcggtgttcgac 122 ||| ||||| |||| ||||| || ||||||||||||| |||||| ||||||||||||||| Sbjct: 100098 aagctcctcctcctccacctccgatgcggctcccaccacaacgcgcgcgcggtgttcgac 100157 Query: 123 gggatgccccgcccgaccaacgccgcccacaactacctcgtcgccggctacttccgcctg 182 || ||||| |||||| ||||||| ||||||||||||| ||| || |||| ||||||| Sbjct: 100158 ggaatgccggcgccgacccacgccgcgcacaactacctcgccgcggggtactcccgcctg 100217 Query: 183 ggcctccccggggacgcgctggggatcgtgcggcggctcgcgggctccacggggcggctc 242 |||||||||| ||| ||||| ||||||||| ||||||| ||| | | ||||||| |||| Sbjct: 100218 ggcctccccgaggaggcgctcgggatcgtgaggcggctggcgaggtgcacggggaggctg 100277 Query: 243 gacgtgttcgcgctctccatggcgctcaagctgtcggcggcgctggcgctgccccgcgcc 302 ||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 100278 aacgtgttcgtgctgtcgatggcgctcaagctgtccgcggcgctggcgctgccccgcgcg 100337 Query: 303 gcgagggaggtccacgcgcgcgtcgtgaggtccctcgcggcgctcgacgagatcctcttc 362 | ||||||||||||||| ||||| |||||||| ||| | | ||| || |||||||| Sbjct: 100338 gtgagggaggtccacgcccgcgtggtgaggtcggtcgtcgagtccgatgacgtcctcttc 100397 Query: 363 gcggcgttggttgacgcctacgtgaagaacgcgtcgctgggatacgcccggcgggtg 419 |||||| |||| |||||||||||||||||||||||||| | ||||| ||||||||| Sbjct: 100398 gcggcgctggtggacgcctacgtgaagaacgcgtcgcttcggtacgcgcggcgggtg 100454
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 343 bits (173), Expect = 3e-91 Identities = 356/417 (85%) Strand = Plus / Plus Query: 3 cagagcctccacgcgcagctcctcacctccggcctccgccccaccgcgggcctctccgtc 62 |||| ||||||||||||||| ||| ||||||||||||||||||| | |||||||||| Sbjct: 14345784 cagaccctccacgcgcagctactcgagtccggcctccgccccaccgacgacctctccgtc 14345843 Query: 63 aagatcctcatcctgcacctgcgttgcggctcccaccgcaacgcccgcgcggtgttcgac 122 ||| ||||| |||| ||||| || ||||||||||||| |||||| ||||||||||||||| Sbjct: 14345844 aagctcctcctcctccacctccgatgcggctcccaccacaacgcgcgcgcggtgttcgac 14345903 Query: 123 gggatgccccgcccgaccaacgccgcccacaactacctcgtcgccggctacttccgcctg 182 || ||||| |||||| ||||||| ||||||||||||| ||| || |||| ||||||| Sbjct: 14345904 ggaatgccggcgccgacccacgccgcgcacaactacctcgccgcggggtactcccgcctg 14345963 Query: 183 ggcctccccggggacgcgctggggatcgtgcggcggctcgcgggctccacggggcggctc 242 |||||||||| ||| ||||| ||||||||| ||||||| ||| | | ||||||| |||| Sbjct: 14345964 ggcctccccgaggaggcgctcgggatcgtgaggcggctggcgaggtgcacggggaggctg 14346023 Query: 243 gacgtgttcgcgctctccatggcgctcaagctgtcggcggcgctggcgctgccccgcgcc 302 ||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 14346024 aacgtgttcgtgctgtcgatggcgctcaagctgtccgcggcgctggcgctgccccgcgcg 14346083 Query: 303 gcgagggaggtccacgcgcgcgtcgtgaggtccctcgcggcgctcgacgagatcctcttc 362 | ||||||||||||||| ||||| |||||||| ||| | | ||| || |||||||| Sbjct: 14346084 gtgagggaggtccacgcccgcgtggtgaggtcggtcgtcgagtccgatgacgtcctcttc 14346143 Query: 363 gcggcgttggttgacgcctacgtgaagaacgcgtcgctgggatacgcccggcgggtg 419 |||||| |||| |||||||||||||||||||||||||| | ||||| ||||||||| Sbjct: 14346144 gcggcgctggtggacgcctacgtgaagaacgcgtcgcttcggtacgcgcggcgggtg 14346200
>dbj|AK106336.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G01, full insert sequence Length = 1809 Score = 343 bits (173), Expect = 3e-91 Identities = 356/417 (85%) Strand = Plus / Plus Query: 3 cagagcctccacgcgcagctcctcacctccggcctccgccccaccgcgggcctctccgtc 62 |||| ||||||||||||||| ||| ||||||||||||||||||| | |||||||||| Sbjct: 145 cagaccctccacgcgcagctactcgagtccggcctccgccccaccgacgacctctccgtc 204 Query: 63 aagatcctcatcctgcacctgcgttgcggctcccaccgcaacgcccgcgcggtgttcgac 122 ||| ||||| |||| ||||| || ||||||||||||| |||||| ||||||||||||||| Sbjct: 205 aagctcctcctcctccacctccgatgcggctcccaccacaacgcgcgcgcggtgttcgac 264 Query: 123 gggatgccccgcccgaccaacgccgcccacaactacctcgtcgccggctacttccgcctg 182 || ||||| |||||| ||||||| ||||||||||||| ||| || |||| ||||||| Sbjct: 265 ggaatgccggcgccgacccacgccgcgcacaactacctcgccgcggggtactcccgcctg 324 Query: 183 ggcctccccggggacgcgctggggatcgtgcggcggctcgcgggctccacggggcggctc 242 |||||||||| ||| ||||| ||||||||| ||||||| ||| | | ||||||| |||| Sbjct: 325 ggcctccccgaggaggcgctcgggatcgtgaggcggctggcgaggtgcacggggaggctg 384 Query: 243 gacgtgttcgcgctctccatggcgctcaagctgtcggcggcgctggcgctgccccgcgcc 302 ||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 385 aacgtgttcgtgctgtcgatggcgctcaagctgtccgcggcgctggcgctgccccgcgcg 444 Query: 303 gcgagggaggtccacgcgcgcgtcgtgaggtccctcgcggcgctcgacgagatcctcttc 362 | ||||||||||||||| ||||| |||||||| ||| | | ||| || |||||||| Sbjct: 445 gtgagggaggtccacgcccgcgtggtgaggtcggtcgtcgagtccgatgacgtcctcttc 504 Query: 363 gcggcgttggttgacgcctacgtgaagaacgcgtcgctgggatacgcccggcgggtg 419 |||||| |||| |||||||||||||||||||||||||| | ||||| ||||||||| Sbjct: 505 gcggcgctggtggacgcctacgtgaagaacgcgtcgcttcggtacgcgcggcgggtg 561
>ref|XM_472582.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2058 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Plus Query: 90 ggctcccaccgcaacgcccgcgcggtgttcgacgggatgcccc 132 ||||||| || | |||||||| |||||||||||||||||||| Sbjct: 190 ggctccctccacgacgcccgcagggtgttcgacgggatgcccc 232
>dbj|AB207102.1| Acidovorax avenae subsp. avenae Hrp gene cluster, complete cds, strain: N1141 Length = 66987 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 281 ggcgctggcgctgccccgcgccg 303 ||||||||||||||||||||||| Sbjct: 57981 ggcgctggcgctgccccgcgccg 58003
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Minus Query: 90 ggctcccaccgcaacgcccgcgcggtgttcgacgggatgcccc 132 ||||||| || | |||||||| |||||||||||||||||||| Sbjct: 21713813 ggctccctccacgacgcccgcagggtgttcgacgggatgcccc 21713771 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 285 ctggcgctgccccgcgccgcga 306 |||||||||||||||||||||| Sbjct: 17874358 ctggcgctgccccgcgccgcga 17874337
>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20, complete sequence Length = 141915 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Minus Query: 90 ggctcccaccgcaacgcccgcgcggtgttcgacgggatgcccc 132 ||||||| || | |||||||| |||||||||||||||||||| Sbjct: 25430 ggctccctccacgacgcccgcagggtgttcgacgggatgcccc 25388
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 269 caagctgtcggcggcgctggcgctgc 294 |||| ||||||||||||||||||||| Sbjct: 3240627 caaggtgtcggcggcgctggcgctgc 3240602
>gb|DQ069140.1| Uncultured bacterium clone HT9011M24 assimilatory nitrate reductase (narB) gene, partial cds Length = 657 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 359 cttcgcggcgttggttgacgcc 380 |||||||||||||||||||||| Sbjct: 517 cttcgcggcgttggttgacgcc 496
>emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016N04, complete sequence Length = 164645 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 285 ctggcgctgccccgcgccgcga 306 |||||||||||||||||||||| Sbjct: 71113 ctggcgctgccccgcgccgcga 71092
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 caacgcccgcgcggtgttcgacggg 125 ||||| ||||||||||||||||||| Sbjct: 1319819 caacgaccgcgcggtgttcgacggg 1319843
>gb|BC051934.1| Mus musculus succinate dehydrogenase complex, subunit B, iron sulfur (Ip), mRNA (cDNA clone MGC:62176 IMAGE:5688898), complete cds Length = 1091 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cgcggtgttcgacgggatgcc 130 ||||||||||||||||||||| Sbjct: 78 cgcggtgttcgacgggatgcc 98
>ref|NM_023374.3| Mus musculus succinate dehydrogenase complex, subunit B, iron sulfur (Ip) (Sdhb), mRNA Length = 1091 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cgcggtgttcgacgggatgcc 130 ||||||||||||||||||||| Sbjct: 78 cgcggtgttcgacgggatgcc 98
>dbj|AB121692.1| Mus musculus peptidylarginine deiminase gene cluster (Padi2, Padi1, Padi23, Padi4, Padi6), complete cds Length = 240498 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cgcggtgttcgacgggatgcc 130 ||||||||||||||||||||| Sbjct: 4197 cgcggtgttcgacgggatgcc 4177 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 cgcggtgttcgacgggatgcc 130 ||||||||||||||||||||| Sbjct: 101 cgcggtgttcgacgggatgcc 81
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 gcggctcccaccgcaacgcccgcgc 112 ||||||||||||||| ||||||||| Sbjct: 1987141 gcggctcccaccgcatcgcccgcgc 1987165
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 gtcggcggcgctggcgctgcc 295 ||||||||||||||||||||| Sbjct: 3640741 gtcggcggcgctggcgctgcc 3640721 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 tcgcggcgctcgacgagatcctct 360 |||||||||| ||||||||||||| Sbjct: 1008439 tcgcggcgctggacgagatcctct 1008462
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 cgcccggcgggtgcacggcat 427 ||||||||||||||||||||| Sbjct: 924199 cgcccggcgggtgcacggcat 924219
>emb|AL645625.15| Mouse DNA sequence from clone RP23-183L1 on chromosome 4, complete sequence Length = 226754 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cgcggtgttcgacgggatgcc 130 ||||||||||||||||||||| Sbjct: 44112 cgcggtgttcgacgggatgcc 44132
>gb|AY847292.1| Rhodobacter sphaeroides strain 2.4.1 decaprenyl diphosphate synthase gene, complete cds Length = 1002 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cggggacgcgctggggatcg 210 |||||||||||||||||||| Sbjct: 624 cggggacgcgctggggatcg 643
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 tgtcggcggcgctggcgctg 293 |||||||||||||||||||| Sbjct: 2213707 tgtcggcggcgctggcgctg 2213726
>gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcomycin biosynthetic gene cluster, partial sequence Length = 85915 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 cgtgcggcggctcgcgggct 228 |||||||||||||||||||| Sbjct: 7090 cgtgcggcggctcgcgggct 7071
>ref|XM_549937.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2103 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 tcgtcgccggctacttccgc 179 |||||||||||||||||||| Sbjct: 1820 tcgtcgccggctacttccgc 1839
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12, complete sequence Length = 164064 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 50 gggcctctccgtcaagatcctcatcctg 77 |||| ||||||||||||||||| ||||| Sbjct: 105931 gggcgtctccgtcaagatcctcttcctg 105958
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 ctcgacgagatcctcttcgcggcg 368 |||||| ||||||||||||||||| Sbjct: 2938 ctcgacaagatcctcttcgcggcg 2915
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cggggacgcgctggggatcg 210 |||||||||||||||||||| Sbjct: 2493567 cggggacgcgctggggatcg 2493586
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tcggcggcgctggcgctgcc 295 |||||||||||||||||||| Sbjct: 131465 tcggcggcgctggcgctgcc 131446
>emb|AL358781.19| Human DNA sequence from clone RP11-334J6 on chromosome 9 Contains the 3' end of the gene for a novel protein (KIAA0515), the RNU62 gene for U62 small nucleolar RNA, a novel gene identical to the RNU62 gene, the POMT1 gene for protein-O-mannosyltransferase 1, a novel gene, the gene for uridine-cytidine kinase 1 (UCK1) and three CpG islands, complete sequence Length = 147492 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 36 ctccgccccaccgcgggcctctccgtca 63 |||| ||||||||||||| ||||||||| Sbjct: 91840 ctcctccccaccgcgggcttctccgtca 91867
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tcggcggcgctggcgctgcc 295 |||||||||||||||||||| Sbjct: 2445988 tcggcggcgctggcgctgcc 2445969
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gctgtcggcggcgctggcgc 291 |||||||||||||||||||| Sbjct: 98094 gctgtcggcggcgctggcgc 98075
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cggcggcgctggcgctgccc 296 |||||||||||||||||||| Sbjct: 49912 cggcggcgctggcgctgccc 49893
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gctgtcggcggcgctggcgc 291 |||||||||||||||||||| Sbjct: 34579 gctgtcggcggcgctggcgc 34560
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cggcggcgctggcgctgccc 296 |||||||||||||||||||| Sbjct: 169406 cggcggcgctggcgctgccc 169425
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gctgtcggcggcgctggcgc 291 |||||||||||||||||||| Sbjct: 99187 gctgtcggcggcgctggcgc 99168
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 ctcgcggcgctcgacgagatcctc 359 ||||| |||||||||||||||||| Sbjct: 1063560 ctcgccgcgctcgacgagatcctc 1063583
>gb|AC009535.9| Drosophila melanogaster, chromosome 2R, region 54B-54B, BAC clone BACR28O12, complete sequence Length = 161244 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 gcctccgccccaccgcgggc 53 |||||||||||||||||||| Sbjct: 7529 gcctccgccccaccgcgggc 7510
>gb|AC005713.8|AC005713 Drosophila melanogaster, chromosome 2R, region 54A1-54B2, BAC clone BACR48A11, complete sequence Length = 157507 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 gcctccgccccaccgcgggc 53 |||||||||||||||||||| Sbjct: 152061 gcctccgccccaccgcgggc 152042
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gctcctcacctccggcctcc 39 |||||||||||||||||||| Sbjct: 24964681 gctcctcacctccggcctcc 24964662
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 50 gggcctctccgtcaagatcctcatcctg 77 |||| ||||||||||||||||| ||||| Sbjct: 17161796 gggcgtctccgtcaagatcctcttcctg 17161823
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tcgtcgccggctacttccgc 179 |||||||||||||||||||| Sbjct: 1089477 tcgtcgccggctacttccgc 1089458
>gb|AF512500.1| Chlamydomonas reinhardtii RIB72 protein mRNA, complete cds Length = 2683 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 cgccggctacttccgcctgggcct 187 ||||||| |||||||||||||||| Sbjct: 1172 cgccggcgacttccgcctgggcct 1195
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tccacgcgcagctcctcacc 29 |||||||||||||||||||| Sbjct: 4812027 tccacgcgcagctcctcacc 4812008
>dbj|AP004733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0023I22 Length = 170029 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gctcctcacctccggcctcc 39 |||||||||||||||||||| Sbjct: 17014 gctcctcacctccggcctcc 16995
>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0530H05 Length = 145952 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gctcctcacctccggcctcc 39 |||||||||||||||||||| Sbjct: 59236 gctcctcacctccggcctcc 59217
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 tgtcggcggcgctggcgctg 293 |||||||||||||||||||| Sbjct: 2393374 tgtcggcggcgctggcgctg 2393355 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 gctgtcggcggcgctggcgctgcc 295 |||| ||||||||||||||||||| Sbjct: 1028103 gctggcggcggcgctggcgctgcc 1028080 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tcgcggcgctcgacgagatc 356 |||||||||||||||||||| Sbjct: 83245 tcgcggcgctcgacgagatc 83226
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cggtgttcgacgggatgccc 131 |||||||||||||||||||| Sbjct: 415135 cggtgttcgacgggatgccc 415116
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0494A10 Length = 145576 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tcgtcgccggctacttccgc 179 |||||||||||||||||||| Sbjct: 127145 tcgtcgccggctacttccgc 127126
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tcgtcgccggctacttccgc 179 |||||||||||||||||||| Sbjct: 58791 tcgtcgccggctacttccgc 58772
>dbj|AK101894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070O22, full insert sequence Length = 930 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 50 gggcctctccgtcaagatcctcatcctg 77 |||| ||||||||||||||||| ||||| Sbjct: 397 gggcgtctccgtcaagatcctcttcctg 424
>dbj|AK101725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061C03, full insert sequence Length = 1463 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gctcctcacctccggcctcc 39 |||||||||||||||||||| Sbjct: 316 gctcctcacctccggcctcc 335
>gb|AE003803.4| Drosophila melanogaster chromosome 2R, section 47 of 73 of the complete sequence Length = 290783 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 gcctccgccccaccgcgggc 53 |||||||||||||||||||| Sbjct: 27547 gcctccgccccaccgcgggc 27528
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 cggcatggtgccgacgccgg 441 |||||||||||||||||||| Sbjct: 1688200 cggcatggtgccgacgccgg 1688219 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,397,725 Number of Sequences: 3902068 Number of extensions: 2397725 Number of successful extensions: 63328 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60543 Number of HSP's gapped (non-prelim): 2780 length of query: 473 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 451 effective length of database: 17,147,199,772 effective search space: 7733387097172 effective search space used: 7733387097172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
