ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48c12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476301.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1348 Score = 208 bits (105), Expect = 1e-50 Identities = 150/165 (90%) Strand = Plus / Plus Query: 141 tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 200 |||| |||||||||||||||||||||||||| || |||||||||| |||||||||||| Sbjct: 217 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 276 Query: 201 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 260 ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct: 277 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 336 Query: 261 accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 305 | |||||||||||||||||||| |||||||| || |||||||||| Sbjct: 337 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 381 Score = 99.6 bits (50), Expect = 8e-18 Identities = 107/126 (84%) Strand = Plus / Plus Query: 315 tcccgtccccgtccgtcgcggactggtggcgcaccgtccggctctacacggaccagacca 374 ||||||| |||||||| |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct: 409 tcccgtcgccgtccgtggcggcgtggtggcgcaccgtgcggctgtacaccgaccagacct 468 Query: 375 cggccaacgtgtcggccgtggtggcgctcgggcaggagaagtgcgacgtgcggatgtcgc 434 |||| |||||||| | |||||| |||||||| |||||||||||||| ||| ||||| Sbjct: 469 cggcgaacgtgtccggggtggtgaggctcgggcgggagaagtgcgacgcgcgcgcgtcgc 528 Query: 435 ggggcg 440 |||||| Sbjct: 529 ggggcg 534
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 208 bits (105), Expect = 1e-50 Identities = 150/165 (90%) Strand = Plus / Plus Query: 141 tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 200 |||| |||||||||||||||||||||||||| || |||||||||| |||||||||||| Sbjct: 109368 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 109427 Query: 201 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 260 ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct: 109428 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 109487 Query: 261 accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 305 | |||||||||||||||||||| |||||||| || |||||||||| Sbjct: 109488 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 109532 Score = 99.6 bits (50), Expect = 8e-18 Identities = 107/126 (84%) Strand = Plus / Plus Query: 315 tcccgtccccgtccgtcgcggactggtggcgcaccgtccggctctacacggaccagacca 374 ||||||| |||||||| |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct: 109560 tcccgtcgccgtccgtggcggcgtggtggcgcaccgtgcggctgtacaccgaccagacct 109619 Query: 375 cggccaacgtgtcggccgtggtggcgctcgggcaggagaagtgcgacgtgcggatgtcgc 434 |||| |||||||| | |||||| |||||||| |||||||||||||| ||| ||||| Sbjct: 109620 cggcgaacgtgtccggggtggtgaggctcgggcgggagaagtgcgacgcgcgcgcgtcgc 109679 Query: 435 ggggcg 440 |||||| Sbjct: 109680 ggggcg 109685
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 208 bits (105), Expect = 1e-50 Identities = 150/165 (90%) Strand = Plus / Plus Query: 141 tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 200 |||| |||||||||||||||||||||||||| || |||||||||| |||||||||||| Sbjct: 1789152 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 1789211 Query: 201 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 260 ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct: 1789212 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 1789271 Query: 261 accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 305 | |||||||||||||||||||| |||||||| || |||||||||| Sbjct: 1789272 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 1789316 Score = 99.6 bits (50), Expect = 8e-18 Identities = 107/126 (84%) Strand = Plus / Plus Query: 315 tcccgtccccgtccgtcgcggactggtggcgcaccgtccggctctacacggaccagacca 374 ||||||| |||||||| |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct: 1789344 tcccgtcgccgtccgtggcggcgtggtggcgcaccgtgcggctgtacaccgaccagacct 1789403 Query: 375 cggccaacgtgtcggccgtggtggcgctcgggcaggagaagtgcgacgtgcggatgtcgc 434 |||| |||||||| | |||||| |||||||| |||||||||||||| ||| ||||| Sbjct: 1789404 cggcgaacgtgtccggggtggtgaggctcgggcgggagaagtgcgacgcgcgcgcgtcgc 1789463 Query: 435 ggggcg 440 |||||| Sbjct: 1789464 ggggcg 1789469
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 208 bits (105), Expect = 1e-50 Identities = 150/165 (90%) Strand = Plus / Plus Query: 141 tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 200 |||| |||||||||||||||||||||||||| || |||||||||| |||||||||||| Sbjct: 114301 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 114360 Query: 201 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 260 ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct: 114361 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 114420 Query: 261 accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 305 | |||||||||||||||||||| |||||||| || |||||||||| Sbjct: 114421 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 114465 Score = 99.6 bits (50), Expect = 8e-18 Identities = 107/126 (84%) Strand = Plus / Plus Query: 315 tcccgtccccgtccgtcgcggactggtggcgcaccgtccggctctacacggaccagacca 374 ||||||| |||||||| |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct: 114493 tcccgtcgccgtccgtggcggcgtggtggcgcaccgtgcggctgtacaccgaccagacct 114552 Query: 375 cggccaacgtgtcggccgtggtggcgctcgggcaggagaagtgcgacgtgcggatgtcgc 434 |||| |||||||| | |||||| |||||||| |||||||||||||| ||| ||||| Sbjct: 114553 cggcgaacgtgtccggggtggtgaggctcgggcgggagaagtgcgacgcgcgcgcgtcgc 114612 Query: 435 ggggcg 440 |||||| Sbjct: 114613 ggggcg 114618
>dbj|AK105690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C03, full insert sequence Length = 1482 Score = 208 bits (105), Expect = 1e-50 Identities = 150/165 (90%) Strand = Plus / Plus Query: 141 tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 200 |||| |||||||||||||||||||||||||| || |||||||||| |||||||||||| Sbjct: 245 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 304 Query: 201 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 260 ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct: 305 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 364 Query: 261 accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 305 | |||||||||||||||||||| |||||||| || |||||||||| Sbjct: 365 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 409 Score = 99.6 bits (50), Expect = 8e-18 Identities = 107/126 (84%) Strand = Plus / Plus Query: 315 tcccgtccccgtccgtcgcggactggtggcgcaccgtccggctctacacggaccagacca 374 ||||||| |||||||| |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct: 437 tcccgtcgccgtccgtggcggcgtggtggcgcaccgtgcggctgtacaccgaccagacct 496 Query: 375 cggccaacgtgtcggccgtggtggcgctcgggcaggagaagtgcgacgtgcggatgtcgc 434 |||| |||||||| | |||||| |||||||| |||||||||||||| ||| ||||| Sbjct: 497 cggcgaacgtgtccggggtggtgaggctcgggcgggagaagtgcgacgcgcgcgcgtcgc 556 Query: 435 ggggcg 440 |||||| Sbjct: 557 ggggcg 562
>dbj|AK068474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155H19, full insert sequence Length = 1351 Score = 208 bits (105), Expect = 1e-50 Identities = 150/165 (90%) Strand = Plus / Plus Query: 141 tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 200 |||| |||||||||||||||||||||||||| || |||||||||| |||||||||||| Sbjct: 219 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 278 Query: 201 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 260 ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct: 279 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggccagccg 338 Query: 261 accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 305 | |||||||||||||||||||| |||||||| || |||||||||| Sbjct: 339 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 383 Score = 99.6 bits (50), Expect = 8e-18 Identities = 107/126 (84%) Strand = Plus / Plus Query: 315 tcccgtccccgtccgtcgcggactggtggcgcaccgtccggctctacacggaccagacca 374 ||||||| |||||||| |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct: 411 tcccgtcgccgtccgtggcggcgtggtggcgcaccgtgcggctgtacaccgaccagacct 470 Query: 375 cggccaacgtgtcggccgtggtggcgctcgggcaggagaagtgcgacgtgcggatgtcgc 434 |||| |||||||| | |||||| |||||||| |||||||||||||| ||| ||||| Sbjct: 471 cggcgaacgtgtccggggtggtgaggctcgggcgggagaagtgcgacgcgcgcgcgtcgc 530 Query: 435 ggggcg 440 |||||| Sbjct: 531 ggggcg 536
>gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence Length = 130987 Score = 145 bits (73), Expect = 1e-31 Identities = 139/161 (86%) Strand = Plus / Plus Query: 143 ggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgggc 202 ||||| || |||||||||||||| ||||| || |||| ||||| |||||||||||||| Sbjct: 101784 ggcgcttcaaagaagttcgagggctcgtcggagttcgtgaagctagagtaccacatgggt 101843 Query: 203 cccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccgac 262 |||||||| || ||| |||||| || |||||||||||||| ||||||||||| |||| Sbjct: 101844 cccgtcctggcgtccgccatcacggtgcacccgatctggtatggcgcctggcccgccgcg 101903 Query: 263 cagaagcgcaccatccgcgccttcctccgctccctctcgcc 303 ||||||||||| |||||||| ||||||||||||||| |||| Sbjct: 101904 cagaagcgcacgatccgcgcgttcctccgctccctcgcgcc 101944 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 337 ctggtggcgcaccgtccggctctacacggaccagaccacggccaacgtgtcggc 390 |||||||||||| || ||||||||||||||||||||| | |||||||||||||| Sbjct: 101990 ctggtggcgcacggtgcggctctacacggaccagacctccgccaacgtgtcggc 102043
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 26 ccagccgagatgccgcagcgcgg 48 ||||||||||||||||||||||| Sbjct: 1870125 ccagccgagatgccgcagcgcgg 1870103
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 431 tcgcggggcgcgtcgctgtcga 452 |||||||||||||||||||||| Sbjct: 841724 tcgcggggcgcgtcgctgtcga 841745
>ref|NM_124534.2| Arabidopsis thaliana unknown protein AT5G51550 mRNA, complete cds Length = 1402 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 219 acatcaccgtccacccgatctggtacggc 247 |||||||||| ||||| |||||||||||| Sbjct: 286 acatcaccgttcacccaatctggtacggc 314
>ref|NM_191206.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1071 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gtggccgccctcggcgcgtcc 151 ||||||||||||||||||||| Sbjct: 529 gtggccgccctcggcgcgtcc 549
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 cgccgtggccgccctcggcgc 147 ||||||||||||||||||||| Sbjct: 34902 cgccgtggccgccctcggcgc 34882
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 232 cccgatctggtacggcgcctggccg 256 |||||||||| |||||||||||||| Sbjct: 2892204 cccgatctgggacggcgcctggccg 2892228
>gb|AY103306.1| Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, complete cds Length = 1014 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 219 acatcaccgtccacccgatctggtacggc 247 |||||||||| ||||| |||||||||||| Sbjct: 197 acatcaccgttcacccaatctggtacggc 225
>gb|AE011873.1| Xanthomonas axonopodis pv. citri str. 306, section 251 of 469 of the complete genome Length = 10565 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 232 cccgatctggtacggcgcctggccg 256 |||||||||| |||||||||||||| Sbjct: 7807 cccgatctgggacggcgcctggccg 7831
>gb|AY058883.1| Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, complete cds Length = 1221 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 219 acatcaccgtccacccgatctggtacggc 247 |||||||||| ||||| |||||||||||| Sbjct: 285 acatcaccgttcacccaatctggtacggc 313
>gb|AF428325.1|AF428325 Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, complete cds Length = 1211 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 219 acatcaccgtccacccgatctggtacggc 247 |||||||||| ||||| |||||||||||| Sbjct: 282 acatcaccgttcacccaatctggtacggc 310
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 gtggccgccctcggcgcgtcc 151 ||||||||||||||||||||| Sbjct: 31314509 gtggccgccctcggcgcgtcc 31314489 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 tccgcgccttcctccgctccctct 299 |||||||| ||||||||||||||| Sbjct: 40763888 tccgcgccctcctccgctccctct 40763865 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ccgtcctcgccgccgacatc 223 |||||||||||||||||||| Sbjct: 25998071 ccgtcctcgccgccgacatc 25998052
>emb|BX821853.1|CNS0A8AB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL7ZB01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 978 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 219 acatcaccgtccacccgatctggtacggc 247 |||||||||| ||||| |||||||||||| Sbjct: 554 acatcaccgttcacccaatctggtacggc 526
>emb|BX832775.1|CNS0A0KF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL10ZD05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1193 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 219 acatcaccgtccacccgatctggtacggc 247 |||||||||| ||||| |||||||||||| Sbjct: 264 acatcaccgttcacccaatctggtacggc 292
>emb|BX831378.1|CNS0A0O9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS84ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1234 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 219 acatcaccgtccacccgatctggtacggc 247 |||||||||| ||||| |||||||||||| Sbjct: 268 acatcaccgttcacccaatctggtacggc 296
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0481E12 Length = 161563 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 gtggccgccctcggcgcgtcc 151 ||||||||||||||||||||| Sbjct: 68792 gtggccgccctcggcgcgtcc 68772
>gb|AY087269.1| Arabidopsis thaliana clone 33455 mRNA, complete sequence Length = 1272 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 219 acatcaccgtccacccgatctggtacggc 247 |||||||||| ||||| |||||||||||| Sbjct: 286 acatcaccgttcacccaatctggtacggc 314
>gb|AE005107.1| Halobacterium sp. NRC-1 section 138 of 170 of the complete genome Length = 13368 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 ccgtggccgccctcggcgcgt 149 ||||||||||||||||||||| Sbjct: 12048 ccgtggccgccctcggcgcgt 12028
>dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17N15 Length = 81293 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 219 acatcaccgtccacccgatctggtacggc 247 |||||||||| ||||| |||||||||||| Sbjct: 39185 acatcaccgttcacccaatctggtacggc 39157
>gb|AY666490.1| Anas platyrhynchos voucher 1B-3367 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 694 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 ccccgtcctcgccgccgacatcac 225 ||||||||||||||||| |||||| Sbjct: 547 ccccgtcctcgccgccggcatcac 570
>gb|AY666496.1| Anas platyrhynchos voucher 1B-3638 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 694 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 ccccgtcctcgccgccgacatcac 225 ||||||||||||||||| |||||| Sbjct: 547 ccccgtcctcgccgccggcatcac 570
>gb|AY666221.1| Anas rubripes voucher 1B-726 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 692 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 ccccgtcctcgccgccgacatcac 225 ||||||||||||||||| |||||| Sbjct: 545 ccccgtcctcgccgccggcatcac 568
>gb|AY666211.1| Anas rubripes voucher 1B-711 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 694 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 ccccgtcctcgccgccgacatcac 225 ||||||||||||||||| |||||| Sbjct: 547 ccccgtcctcgccgccggcatcac 570
>gb|AY666405.1| Anas crecca voucher 1B-2590 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial Length = 649 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 ccccgtcctcgccgccgacatcac 225 ||||||||||||||||| |||||| Sbjct: 502 ccccgtcctcgccgccggcatcac 525
>ref|XM_466501.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1861 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ccgcgccttcctccgctccc 296 |||||||||||||||||||| Sbjct: 421 ccgcgccttcctccgctccc 440
>ref|NM_190003.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1494 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 tccgcgccttcctccgctccctct 299 |||||||| ||||||||||||||| Sbjct: 86 tccgcgccctcctccgctccctct 109
>ref|XM_478424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2115 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 atgggccccgtcctcgccgc 216 |||||||||||||||||||| Sbjct: 186 atgggccccgtcctcgccgc 167
>ref|XM_478215.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1361 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agtaccacatgggccccgtc 208 |||||||||||||||||||| Sbjct: 137 agtaccacatgggccccgtc 156
>ref|XM_883530.1| Leishmania major strain Friedlin hypothetical protein (L2385.05) partial mRNA Length = 2631 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 ctcgccgccgacatcaccgt 228 |||||||||||||||||||| Sbjct: 1776 ctcgccgccgacatcaccgt 1795
>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end Length = 247462 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 ctcgccgccgacatcaccgt 228 |||||||||||||||||||| Sbjct: 194124 ctcgccgccgacatcaccgt 194105
>ref|XM_741765.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g00720) partial mRNA Length = 1143 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 cagtcccccgtcccgtccccgtcc 328 |||||||| ||||||||||||||| Sbjct: 958 cagtccccagtcccgtccccgtcc 935
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 cctcgccgccgacatcaccg 227 |||||||||||||||||||| Sbjct: 118192 cctcgccgccgacatcaccg 118211
>emb|AL672113.1|MLO672113 Mesorhizobium loti R7A symbiosis island; segment 2/4 Length = 152050 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 gccgagatgccgcagcgcggcggc 52 ||||||||| |||||||||||||| Sbjct: 41768 gccgagatggcgcagcgcggcggc 41791
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 ccagccgagatgccgcagcg 45 |||||||||||||||||||| Sbjct: 3193619 ccagccgagatgccgcagcg 3193600
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 cctcgccgccgacatcaccg 227 |||||||||||||||||||| Sbjct: 771925 cctcgccgccgacatcaccg 771906
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 atgggccccgtcctcgccgc 216 |||||||||||||||||||| Sbjct: 19885225 atgggccccgtcctcgccgc 19885206 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agtaccacatgggccccgtc 208 |||||||||||||||||||| Sbjct: 18564848 agtaccacatgggccccgtc 18564867
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ccgcgccttcctccgctccc 296 |||||||||||||||||||| Sbjct: 22998643 ccgcgccttcctccgctccc 22998662
>gb|AC010907.10| Homo sapiens BAC clone RP11-568H24 from 2, complete sequence Length = 139357 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 cccccgtcccgtccccgtcc 328 |||||||||||||||||||| Sbjct: 117790 cccccgtcccgtccccgtcc 117809
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12 Length = 167881 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 tccgcgccttcctccgctccctct 299 |||||||| ||||||||||||||| Sbjct: 66534 tccgcgccctcctccgctccctct 66511
>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0707D10 Length = 172003 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ccgtcctcgccgccgacatc 223 |||||||||||||||||||| Sbjct: 94138 ccgtcctcgccgccgacatc 94119
>dbj|AP003234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0038D11 Length = 156465 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ccgtcctcgccgccgacatc 223 |||||||||||||||||||| Sbjct: 1646 ccgtcctcgccgccgacatc 1627
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 gccgtggccgccctcggcgc 147 |||||||||||||||||||| Sbjct: 3475332 gccgtggccgccctcggcgc 3475313
>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0005E02 Length = 89380 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agtaccacatgggccccgtc 208 |||||||||||||||||||| Sbjct: 17390 agtaccacatgggccccgtc 17409
>dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1067_B01 Length = 100525 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ccgcgccttcctccgctccc 296 |||||||||||||||||||| Sbjct: 23040 ccgcgccttcctccgctccc 23059
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 cgcgtcgctgtcgaggatgg 458 |||||||||||||||||||| Sbjct: 1594992 cgcgtcgctgtcgaggatgg 1594973
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 gccgagatgccgcagcgcggcggc 52 ||||||||| |||||||||||||| Sbjct: 4958717 gccgagatggcgcagcgcggcggc 4958694
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ccgcgccttcctccgctccc 296 |||||||||||||||||||| Sbjct: 118445 ccgcgccttcctccgctccc 118464
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 atgggccccgtcctcgccgc 216 |||||||||||||||||||| Sbjct: 49875 atgggccccgtcctcgccgc 49856
>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1457_D07 Length = 103688 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agtaccacatgggccccgtc 208 |||||||||||||||||||| Sbjct: 93604 agtaccacatgggccccgtc 93623
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 atgggccccgtcctcgccgc 216 |||||||||||||||||||| Sbjct: 125384 atgggccccgtcctcgccgc 125365
>dbj|AK121812.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098C24, full insert sequence Length = 2185 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 atgggccccgtcctcgccgc 216 |||||||||||||||||||| Sbjct: 54 atgggccccgtcctcgccgc 35
>dbj|AK069976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035N02, full insert sequence Length = 1861 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ccgcgccttcctccgctccc 296 |||||||||||||||||||| Sbjct: 421 ccgcgccttcctccgctccc 440
>dbj|AK064235.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H11, full insert sequence Length = 1361 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agtaccacatgggccccgtc 208 |||||||||||||||||||| Sbjct: 137 agtaccacatgggccccgtc 156
>gb|AC164420.4| Mus musculus chromosome 8, clone RP24-388L13, complete sequence Length = 174120 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cccccgtcccgtccccgtcc 328 |||||||||||||||||||| Sbjct: 125849 cccccgtcccgtccccgtcc 125830
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 cggcgcctggccggccgacc 263 |||||||||||||||||||| Sbjct: 3408867 cggcgcctggccggccgacc 3408848
>gb|AY662783.1| Pterophyllum scalare cytochrome oxidase subunit I gene, partial cds; mitochondrial Length = 649 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 ccccgtcctcgccgccgacatcac 225 ||||||||||||||||| |||||| Sbjct: 547 ccccgtcctcgccgccggcatcac 570
>gb|AC120789.12| Mus musculus chromosome 8, clone RP23-441F24, complete sequence Length = 204013 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 cccccgtcccgtccccgtcc 328 |||||||||||||||||||| Sbjct: 32397 cccccgtcccgtccccgtcc 32378
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gaccacggccaacgtgtcgg 389 |||||||||||||||||||| Sbjct: 775966 gaccacggccaacgtgtcgg 775947 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,931,657 Number of Sequences: 3902068 Number of extensions: 1931657 Number of successful extensions: 51248 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49559 Number of HSP's gapped (non-prelim): 1689 length of query: 458 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 436 effective length of database: 17,147,199,772 effective search space: 7476179100592 effective search space used: 7476179100592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
