ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast48c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 81 1e-15
2APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 78 1e-14
3EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 50 4e-06
4PPCK_RHILO (Q98CL7) Phosphoenolpyruvate carboxykinase [ATP] (EC ... 29 5.1
5HUTU_CHRVO (Q7P190) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 29 6.7
6PEPT_STRMU (Q8CWX9) Peptidase T (EC 3.4.11.4) (Tripeptide aminop... 29 6.7
7Y2353_MYCBO (P63400) Hypothetical ABC transporter ATP-binding pr... 29 6.7
8Y2326_MYCTU (P63399) Hypothetical ABC transporter ATP-binding pr... 29 6.7
9RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun... 28 8.7

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
 Frame = +3

Query: 192 FVFGDSLVDNGNNNYLMTTARADAPPYGIDFPTHMPTGRFSNGLNIPDIISEYLGAEPAL 371
           F FGDS+ D GNNN L T  +++  PYG+DF   + TGRFSNG+   D +++Y+G +  +
Sbjct: 206 FFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGVKEIV 265

Query: 372 P-YLSPYMRGXHLLVGANFASAGVG 443
           P YL P ++   LL G +FAS G G
Sbjct: 266 PAYLDPKIQPNDLLTGVSFASGGAG 290



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
 Frame = +3

Query: 192 FVFGDSLVDNGNNNYLMTTARADAPPYGIDFPTHMPTGRFSNGLNIPDIISEYLGAEPAL 371
           F FGDS+ D GNNN L T  + +  PYG+DFP  + TGRFSNG    D IS+YLG +  +
Sbjct: 127 FFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGVKEIV 186

Query: 372 P-YLSPYMRGXH------LLVGANFASAGVGILSDT 458
           P Y+   ++  +      LL G +FAS G G L  T
Sbjct: 187 PAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQT 222



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 36/84 (42%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = +3

Query: 192 FVFGDSLVDNGNNNYLMTTARADAPPYGIDFPTHMPTGRFSNGLNIPDIISEYLGAEPAL 371
           F FGDS  D G             PPYG  F  H  TGR+S+G  I D I+E       L
Sbjct: 36  FNFGDSNSDTGGKAAAFYPLN---PPYGETF-FHRSTGRYSDGRLIIDFIAESFN----L 87

Query: 372 PYLSPYMR--GXHLLVGANFASAG 437
           PYLSPY+   G +   GA+FA+AG
Sbjct: 88  PYLSPYLSSLGSNFKHGADFATAG 111



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>PPCK_RHILO (Q98CL7) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 536

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 270 YGIDF-PTHMPTGRFSNGLNIPDIISEYLGAEPALPYLSPYMRGXHLLVGANFASAG 437
           Y +DF P    TGR S+  NI  + ++  G  P +  L+P     H L G     AG
Sbjct: 325 YPLDFIPNASKTGRASHPKNIIMLTADAFGVMPPIARLTPAQAMYHFLSGYTAKVAG 381



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>HUTU_CHRVO (Q7P190) Urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 556

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 455 VAEDADAGGREVGADEQVXAAHVGAQVRQRRLCPEVLADDVGDVEPV-GEPPRG 297
           + EDA   G+ V       AA V A++  R + P+V+ D     +PV G  P+G
Sbjct: 225 IVEDAKQSGKAVSVGLLGNAADVFAELVARGITPDVVTDQTSAHDPVHGYLPQG 278



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>PEPT_STRMU (Q8CWX9) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)|
           (Aminotripeptidase) (Tripeptidase)
          Length = 406

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 228 NNYLMTTARADAP-PYGIDFPTHMPTGRF-SNGLNIPDIISEYLG 356
           N YL+ T  A+   PY I F  HM T  F + G+N P II  Y G
Sbjct: 58  NGYLVGTLPANGNFPYKIGFIAHMDTADFNAEGVN-PQIIDNYNG 101



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>Y2353_MYCBO (P63400) Hypothetical ABC transporter ATP-binding protein Mb2353c|
          Length = 697

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 207 SLVDNGNNNYLMTTARADAPPYGIDFPTHMPTGRFSNGLNIPDIISEYLGAEP 365
           SL D+ +N  ++ TA   AP  G+D P H P       L +  +  EY    P
Sbjct: 445 SLSDSPDNTDMVHTAAMPAPVIGVDQPQHAP------ALELVGVGHEYASGTP 491



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>Y2326_MYCTU (P63399) Hypothetical ABC transporter ATP-binding protein|
           Rv2326c/MT2388
          Length = 697

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 207 SLVDNGNNNYLMTTARADAPPYGIDFPTHMPTGRFSNGLNIPDIISEYLGAEP 365
           SL D+ +N  ++ TA   AP  G+D P H P       L +  +  EY    P
Sbjct: 445 SLSDSPDNTDMVHTAAMPAPVIGVDQPQHAP------ALELVGVGHEYASGTP 491



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>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 261  APPYGIDFPTHMPTGRFSNGLNIPDIISEYLGAEPALPYLSPYMRGXH 404
            +P Y    PT+ P+  +S+G + PD  S   G  P LP  SP   G +
Sbjct: 1771 SPSYSPSSPTYSPSSPYSSGAS-PD-YSPSAGYSPTLPGYSPSSTGQY 1816


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,743,031
Number of Sequences: 219361
Number of extensions: 663285
Number of successful extensions: 2089
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2086
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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