ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48c03 |
|---|---|
| Clone Library Name | barley_pub |
>GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)| Length = 815 Score = 32.0 bits (71), Expect = 0.36 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = -2 Query: 202 WCSTPAPAPGQWCA-PAAIGILGGSCAITYG-RERTSW 95 WC TP+ P WC+ P + G C+ T R R++W Sbjct: 662 WCRTPSTTPRSWCSTPTRMEPCGRRCSTTPSCRRRSTW 699
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -1 Query: 221 HGGPVAMVLHAGSGAGPVVRPGSHRDLGRELRH 123 HGGP M H G G P + G H + G + H Sbjct: 607 HGGPAGMPPHMGGGPNPHMMGGPHGNAGPHMGH 639
>FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epidermal growth| factor-like domains 1) Length = 4351 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = -2 Query: 199 CSTPAPAPGQWCAPAAIGILGGSCAITYGRERTSW 95 C+ P P G C A G GG C IT +R W Sbjct: 4012 CNCPHPYTGDRCEMEARGCSGGHCLITPEIKRGDW 4046
>ODP2_RALEU (Q59098) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 553 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = -2 Query: 217 AGPWPWCSTPAPAPGQWCAPAAIGILGGSCAI 122 A P P + PAPAP APAA GG I Sbjct: 92 AAPAPAAAAPAPAPAPAAAPAAAPAAGGGGTI 123
>IRX5_HUMAN (P78411) Iroquois-class homeodomain protein IRX-5 (Iroquois| homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A) Length = 482 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -1 Query: 194 HAGSGAGPVVRPGSHRDLGRELRHYVRSRADELAR 90 H G G GP PGSH + L V +RAD LA+ Sbjct: 423 HPGPGPGPTTGPGSHFN---GLNQTVLNRADALAK 454
>KCNC4_RAT (Q63734) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) (Raw3) Length = 625 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Frame = +3 Query: 288 DSVAFVEMAPGGCGGAGDFDRLDDDQ----LMSMFPDEGGSTAPG 410 +++ E GG GGAG D DD+ L + P EGGS PG Sbjct: 157 EALDIFESPDGGGGGAGPGDEAGDDERELALQRLGPHEGGS-GPG 200
>KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) Length = 628 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Frame = +3 Query: 288 DSVAFVEMAPGGCGGAGDFDRLDDDQ----LMSMFPDEGGSTAPG 410 +++ E GG GGAG D DD+ L + P EGGS PG Sbjct: 160 EALDIFESPDGGGGGAGPGDEAGDDERELALQRLGPHEGGS-GPG 203
>BLVR_BOVIN (Q03368) Bovine leukemia virus cell receptor precursor (BLV-R)| (BLVPCP1) Length = 843 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 5/40 (12%) Frame = -2 Query: 214 GPWPWCSTPAPAPGQWCAPAAIGILGG-----SCAITYGR 110 GP PW PA G+W A+ +L C T GR Sbjct: 744 GPGPWPPCPAACCGEWWRATALALLSSLDALQVCVCTCGR 783
>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein| 18) (Small proline-rich-like epidermal differentiation complex protein 5A) Length = 118 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Frame = -2 Query: 205 PWCSTPAPAPGQWCAPAAIG----ILGGSCAITYGRERTS 98 P CS P P P C ++ G GG C +++ R R S Sbjct: 38 PQCSAPCPPPVSSCCGSSSGGCCSSEGGGCCLSHHRPRQS 77
>MAML1_HUMAN (Q92585) Mastermind-like protein 1 (Mam-1)| Length = 1016 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -2 Query: 205 PWCSTPAPAPGQWCAPAAIGILGGSCAITYGRERTSWPGNAQQ 77 P +TPAPAPGQ G S + Y E+ + P + +Q Sbjct: 415 PQQATPAPAPGQMSTWQQTGPSHSSLDVPYPMEKPASPSSYKQ 457
>PG33_MYCTU (Q50615) Hypothetical PE-PGRS family protein PE_PGRS33| Length = 498 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = +3 Query: 288 DSVAFVEMAPGGCGGAG 338 D VAF+ APGG GGAG Sbjct: 295 DGVAFLGTAPGGPGGAG 311
>MAOC_KLEAE (P49251) Protein maoC| Length = 335 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -1 Query: 221 HGGPVAMVLHAGSGAGPVVRPGSHRDLG--RELRHYVRSRA 105 HG P+ ++H G G R G +LG R ++HY++ A Sbjct: 130 HGSPLPQLVHGGPG-----RAGGGEELGGLRSVKHYMQRTA 165
>Y1383_MYCBO (P63392) Hypothetical ABC transporter ATP-binding protein Mb1383| Length = 859 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 Query: 217 AGPWPWCSTPAPAPGQWCAPAAIGIL 140 A P P + PAPA G W A AA +L Sbjct: 261 AAPQPESAVPAPARGSWRAQAASRLL 286
>Y1348_MYCTU (P63391) Hypothetical ABC transporter ATP-binding protein| Rv1348/MT1390 Length = 859 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 Query: 217 AGPWPWCSTPAPAPGQWCAPAAIGIL 140 A P P + PAPA G W A AA +L Sbjct: 261 AAPQPESAVPAPARGSWRAQAASRLL 286
>RAIN_HUMAN (Q5U651) Ras-interacting protein 1 (Rain)| Length = 963 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +1 Query: 154 LPGRTTGPAPEPAWSTMATGPP 219 LP G APEP +T AT PP Sbjct: 124 LPELAAGVAPEPPLATRATAPP 145
>MAOC_ECOLI (P77455) Protein maoC (Phenylacetic acid degradation protein paaZ)| Length = 681 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -1 Query: 221 HGGPVAMVLHAGSGAGPVVRPGSHRDLG--RELRHYVRSRA 105 HG P+ ++H G G R G +LG R ++HY++ A Sbjct: 463 HGSPLPQLVHGGPG-----RAGGGEELGGLRAVKHYMQRTA 498
>UBP25_MOUSE (P57080) Ubiquitin carboxyl-terminal hydrolase 25 (EC 3.1.2.15)| (Ubiquitin thioesterase 25) (Ubiquitin-specific-processing protease 25) (Deubiquitinating enzyme 25) (mUSP25) Length = 1055 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Frame = +3 Query: 48 PCRS*LGATSC----CALPGQLVRSRPYVMAQLPPKIPM 152 PC S L +S ALP + V +P+ +++PP +PM Sbjct: 496 PCASDLPGSSSPASGAALPLRSVIHKPFTQSRIPPDLPM 534
>TREX1_HUMAN (Q9NSU2) Three prime repair exonuclease 1 (EC 3.1.11.2) (3'-5'| exonuclease TREX1) (DNase III) Length = 369 Score = 27.3 bits (59), Expect = 8.8 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 9/77 (11%) Frame = -2 Query: 223 TTAGPWPWCSTP---------APAPGQWCAPAAIGILGGSCAITYGRERTSWPGNAQQLV 71 T+ GP P P APG+ C+PAA I G S A+ R + N L+ Sbjct: 104 TSQGPPPTVPPPPRVVDKLSLCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLL 163 Query: 70 APS*LRQG*LAAQRNQP 20 LA R QP Sbjct: 164 ---------LAFLRRQP 171 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,602,443 Number of Sequences: 219361 Number of extensions: 688821 Number of successful extensions: 2728 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2589 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2721 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
