ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48c03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191282.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 212 bits (107), Expect = 7e-52 Identities = 164/183 (89%) Strand = Plus / Plus Query: 224 gtgggcggacgagttcgccgagttcgcggcggcgcgccggggcgcgcaccgcaggtcgct 283 ||||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||| Sbjct: 87 gtgggcggatgagttcgccgagttcgcggcgtcgcggcggggcgcgcaccgccggtcgct 146 Query: 284 gagcgactcggtggccttcgtggagatggctcccgggggctgcggcggggccggcgactt 343 ||||||||| ||||| ||||| ||| |||| || | ||| ||||| | || |||||| || Sbjct: 147 gagcgactccgtggcgttcgtcgaggtggcgccggcggggtgcggggcgggcggcgagtt 206 Query: 344 cgacaggctggacgacgaccagctcatgtccatgttccccgacgagggcgggtcgacggc 403 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct: 207 cgacaggctcgacgacgaccagctcatgtctatgttccccgacgagggcgggtcgtcggc 266 Query: 404 ccc 406 ||| Sbjct: 267 ccc 269 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 123 atggcgcagctcccgcccaagatcccgatggc 154 ||||||||||||||||||||||||||| |||| Sbjct: 1 atggcgcagctcccgcccaagatcccggtggc 32
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 212 bits (107), Expect = 7e-52 Identities = 164/183 (89%) Strand = Plus / Plus Query: 224 gtgggcggacgagttcgccgagttcgcggcggcgcgccggggcgcgcaccgcaggtcgct 283 ||||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||| Sbjct: 31721442 gtgggcggatgagttcgccgagttcgcggcgtcgcggcggggcgcgcaccgccggtcgct 31721501 Query: 284 gagcgactcggtggccttcgtggagatggctcccgggggctgcggcggggccggcgactt 343 ||||||||| ||||| ||||| ||| |||| || | ||| ||||| | || |||||| || Sbjct: 31721502 gagcgactccgtggcgttcgtcgaggtggcgccggcggggtgcggggcgggcggcgagtt 31721561 Query: 344 cgacaggctggacgacgaccagctcatgtccatgttccccgacgagggcgggtcgacggc 403 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct: 31721562 cgacaggctcgacgacgaccagctcatgtctatgttccccgacgagggcgggtcgtcggc 31721621 Query: 404 ccc 406 ||| Sbjct: 31721622 ccc 31721624 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 338 cgacttcgacaggctggacgacgaccagctcatgtccatgttccccgacga 388 |||||||||| | || ||||||||||||||||||||||||||| ||||||| Sbjct: 6095117 cgacttcgaccgcctcgacgacgaccagctcatgtccatgttctccgacga 6095067 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 123 atggcgcagctcccgcccaagatcccgatggc 154 ||||||||||||||||||||||||||| |||| Sbjct: 31721356 atggcgcagctcccgcccaagatcccggtggc 31721387 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 123 atggcgcagctcccgcccaagatccc 148 ||||||||||| |||||||||||||| Sbjct: 6095455 atggcgcagctgccgcccaagatccc 6095430
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 212 bits (107), Expect = 7e-52 Identities = 164/183 (89%) Strand = Plus / Plus Query: 224 gtgggcggacgagttcgccgagttcgcggcggcgcgccggggcgcgcaccgcaggtcgct 283 ||||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||| Sbjct: 135174 gtgggcggatgagttcgccgagttcgcggcgtcgcggcggggcgcgcaccgccggtcgct 135233 Query: 284 gagcgactcggtggccttcgtggagatggctcccgggggctgcggcggggccggcgactt 343 ||||||||| ||||| ||||| ||| |||| || | ||| ||||| | || |||||| || Sbjct: 135234 gagcgactccgtggcgttcgtcgaggtggcgccggcggggtgcggggcgggcggcgagtt 135293 Query: 344 cgacaggctggacgacgaccagctcatgtccatgttccccgacgagggcgggtcgacggc 403 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct: 135294 cgacaggctcgacgacgaccagctcatgtctatgttccccgacgagggcgggtcgtcggc 135353 Query: 404 ccc 406 ||| Sbjct: 135354 ccc 135356 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 123 atggcgcagctcccgcccaagatcccgatggc 154 ||||||||||||||||||||||||||| |||| Sbjct: 135088 atggcgcagctcccgcccaagatcccggtggc 135119
>dbj|AK108553.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E08, full insert sequence Length = 1111 Score = 212 bits (107), Expect = 7e-52 Identities = 164/183 (89%) Strand = Plus / Plus Query: 224 gtgggcggacgagttcgccgagttcgcggcggcgcgccggggcgcgcaccgcaggtcgct 283 ||||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||| Sbjct: 170 gtgggcggatgagttcgccgagttcgcggcgtcgcggcggggcgcgcaccgccggtcgct 229 Query: 284 gagcgactcggtggccttcgtggagatggctcccgggggctgcggcggggccggcgactt 343 ||||||||| ||||| ||||| ||| |||| || | ||| ||||| | || |||||| || Sbjct: 230 gagcgactccgtggcgttcgtcgaggtggcgccggcggggtgcggggcgggcggcgagtt 289 Query: 344 cgacaggctggacgacgaccagctcatgtccatgttccccgacgagggcgggtcgacggc 403 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct: 290 cgacaggctcgacgacgaccagctcatgtctatgttccccgacgagggcgggtcgtcggc 349 Query: 404 ccc 406 ||| Sbjct: 350 ccc 352 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 123 atggcgcagctcccgcccaagatcccgatggc 154 ||||||||||||||||||||||||||| |||| Sbjct: 84 atggcgcagctcccgcccaagatcccggtggc 115
>ref|NM_188406.1| Oryza sativa (japonica cultivar-group), Ozsa8132 predicted mRNA Length = 864 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 338 cgacttcgacaggctggacgacgaccagctcatgtccatgttccccgacga 388 |||||||||| | || ||||||||||||||||||||||||||| ||||||| Sbjct: 228 cgacttcgaccgcctcgacgacgaccagctcatgtccatgttctccgacga 278
>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031E09 Length = 176349 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 338 cgacttcgacaggctggacgacgaccagctcatgtccatgttccccgacga 388 |||||||||| | || ||||||||||||||||||||||||||| ||||||| Sbjct: 119474 cgacttcgaccgcctcgacgacgaccagctcatgtccatgttctccgacga 119424 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 123 atggcgcagctcccgcccaagatccc 148 ||||||||||| |||||||||||||| Sbjct: 119812 atggcgcagctgccgcccaagatccc 119787
>dbj|AK100944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138F18, full insert sequence Length = 1484 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 338 cgacttcgacaggctggacgacgaccagctcatgtccatgttccccgacga 388 |||||||||| | || ||||||||||||||||||||||||||| ||||||| Sbjct: 413 cgacttcgaccgcctcgacgacgaccagctcatgtccatgttctccgacga 463 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 123 atggcgcagctcccgcccaagatccc 148 ||||||||||| |||||||||||||| Sbjct: 75 atggcgcagctgccgcccaagatccc 100
>ref|XM_464809.1| Oryza sativa (japonica cultivar-group), mRNA Length = 810 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 326 cggcggggccggcgacttcgacaggctggacgacgaccagctcatgtccatgttccccga 385 |||||| | |||||| |||||| |||| |||||||| |||||||||||||||||| |||| Sbjct: 192 cggcggcggcggcgagttcgaccggctcgacgacgaacagctcatgtccatgttctccga 251 Query: 386 cg 387 || Sbjct: 252 cg 253
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 326 cggcggggccggcgacttcgacaggctggacgacgaccagctcatgtccatgttccccga 385 |||||| | |||||| |||||| |||| |||||||| |||||||||||||||||| |||| Sbjct: 8323278 cggcggcggcggcgagttcgaccggctcgacgacgaacagctcatgtccatgttctccga 8323337 Query: 386 cg 387 || Sbjct: 8323338 cg 8323339
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0090H18 Length = 174842 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 326 cggcggggccggcgacttcgacaggctggacgacgaccagctcatgtccatgttccccga 385 |||||| | |||||| |||||| |||| |||||||| |||||||||||||||||| |||| Sbjct: 99949 cggcggcggcggcgagttcgaccggctcgacgacgaacagctcatgtccatgttctccga 100008 Query: 386 cg 387 || Sbjct: 100009 cg 100010
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 226 gggcggacgagttcgccgagttcgcggcggcgcg 259 |||||||||||| |||||||||||||| |||||| Sbjct: 66056 gggcggacgagtacgccgagttcgcggtggcgcg 66023
>ref|NM_196407.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0044I14.8), mRNA Length = 519 Score = 48.1 bits (24), Expect = 0.023 Identities = 66/80 (82%) Strand = Plus / Minus Query: 225 tgggcggacgagttcgccgagttcgcggcggcgcgccggggcgcgcaccgcaggtcgctg 284 |||||||| |||||||||||||||| |||| || ||||| ||| ||||| || ||| Sbjct: 476 tgggcggatgagttcgccgagttcgtggcgtcgtagcggggtgcggaccgcctttcactg 417 Query: 285 agcgactcggtggccttcgt 304 |||||||| ||||| ||||| Sbjct: 416 agcgactctgtggcgttcgt 397
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0044A10, from chromosome 10, complete sequence Length = 173374 Score = 48.1 bits (24), Expect = 0.023 Identities = 66/80 (82%) Strand = Plus / Minus Query: 225 tgggcggacgagttcgccgagttcgcggcggcgcgccggggcgcgcaccgcaggtcgctg 284 |||||||| |||||||||||||||| |||| || ||||| ||| ||||| || ||| Sbjct: 117431 tgggcggatgagttcgccgagttcgtggcgtcgtagcggggtgcggaccgcctttcactg 117372 Query: 285 agcgactcggtggccttcgt 304 |||||||| ||||| ||||| Sbjct: 117371 agcgactctgtggcgttcgt 117352 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 225 tgggcggacgagttcgccgagttcgcgg 252 |||||||| |||||||||||||| |||| Sbjct: 123863 tgggcggatgagttcgccgagtttgcgg 123836
>gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0044I14, from Chromosome 10, complete sequence Length = 63167 Score = 48.1 bits (24), Expect = 0.023 Identities = 66/80 (82%) Strand = Plus / Plus Query: 225 tgggcggacgagttcgccgagttcgcggcggcgcgccggggcgcgcaccgcaggtcgctg 284 |||||||| |||||||||||||||| |||| || ||||| ||| ||||| || ||| Sbjct: 59111 tgggcggatgagttcgccgagttcgtggcgtcgtagcggggtgcggaccgcctttcactg 59170 Query: 285 agcgactcggtggccttcgt 304 |||||||| ||||| ||||| Sbjct: 59171 agcgactctgtggcgttcgt 59190 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 225 tgggcggacgagttcgccgagttcgcgg 252 |||||||| |||||||||||||| |||| Sbjct: 52679 tgggcggatgagttcgccgagtttgcgg 52706
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.023 Identities = 66/80 (82%) Strand = Plus / Minus Query: 225 tgggcggacgagttcgccgagttcgcggcggcgcgccggggcgcgcaccgcaggtcgctg 284 |||||||| |||||||||||||||| |||| || ||||| ||| ||||| || ||| Sbjct: 13271182 tgggcggatgagttcgccgagttcgtggcgtcgtagcggggtgcggaccgcctttcactg 13271123 Query: 285 agcgactcggtggccttcgt 304 |||||||| ||||| ||||| Sbjct: 13271122 agcgactctgtggcgttcgt 13271103 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 225 tgggcggacgagttcgccgagttcgcgg 252 |||||||| |||||||||||||| |||| Sbjct: 13277614 tgggcggatgagttcgccgagtttgcgg 13277587
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.023 Identities = 66/80 (82%) Strand = Plus / Minus Query: 225 tgggcggacgagttcgccgagttcgcggcggcgcgccggggcgcgcaccgcaggtcgctg 284 |||||||| |||||||||||||||| |||| || ||||| ||| ||||| || ||| Sbjct: 13278522 tgggcggatgagttcgccgagttcgtggcgtcgtagcggggtgcggaccgcctttcactg 13278463 Query: 285 agcgactcggtggccttcgt 304 |||||||| ||||| ||||| Sbjct: 13278462 agcgactctgtggcgttcgt 13278443 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 225 tgggcggacgagttcgccgagttcgcgg 252 |||||||| |||||||||||||| |||| Sbjct: 13284954 tgggcggatgagttcgccgagtttgcgg 13284927
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Minus Query: 240 gccgagttcgcggcggcgcgccg 262 ||||||||||||||||||||||| Sbjct: 2287238 gccgagttcgcggcggcgcgccg 2287216
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 250 cggcggcgcgccggggcgcgcaccgc 275 ||||||||||||||||||||| |||| Sbjct: 8300540 cggcggcgcgccggggcgcgcgccgc 8300515
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 250 cggcggcgcgccggggcgcgcaccgc 275 ||||||||||||||||||||| |||| Sbjct: 8298375 cggcggcgcgccggggcgcgcgccgc 8298350
>gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1664B11, complete sequence Length = 126040 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 250 cggcggcgcgccggggcgcgcaccgc 275 ||||||||||||||||||||| |||| Sbjct: 37796 cggcggcgcgccggggcgcgcgccgc 37771
>dbj|AK063163.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-B01, full insert sequence Length = 2669 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 250 cggcggcgcgccggggcgcgcaccgc 275 ||||||||||||||||||||| |||| Sbjct: 2182 cggcggcgcgccggggcgcgcgccgc 2207
>gb|AY107108.1| Zea mays PCO062113 mRNA sequence Length = 730 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 358 acgaccagctcatgtccatgttccccgacg 387 ||||||||||| ||||||||||| |||||| Sbjct: 2 acgaccagctcctgtccatgttctccgacg 31
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 263 gggcgcgcaccgcaggtcgctgagcgact 291 |||||||||||| ||||||||||||||| Sbjct: 16324 gggcgcgcaccgtcggtcgctgagcgact 16296
>gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01, complete sequence Length = 151589 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 263 gggcgcgcaccgcaggtcgctgagcgact 291 |||||||||||| ||||||||||||||| Sbjct: 98723 gggcgcgcaccgtcggtcgctgagcgact 98695
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 263 gggcgcgcaccgcaggtcgctgagcgact 291 |||||||||||| ||||||||||||||| Sbjct: 498925 gggcgcgcaccgtcggtcgctgagcgact 498897
>emb|CR936280.13| Zebrafish DNA sequence from clone DKEY-205D17 in linkage group 22, complete sequence Length = 6845 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 345 gacaggctggacgacgaccagctca 369 ||||||||||| ||||||||||||| Sbjct: 6617 gacaggctggaagacgaccagctca 6593
>emb|BX927276.23| Zebrafish DNA sequence from clone CH211-124A3 in linkage group 22, complete sequence Length = 166844 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 345 gacaggctggacgacgaccagctca 369 ||||||||||| ||||||||||||| Sbjct: 1772 gacaggctggaagacgaccagctca 1748
>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940135D9, complete sequence Length = 93659 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tcgacaggctggacgacgac 362 |||||||||||||||||||| Sbjct: 33219 tcgacaggctggacgacgac 33200
>ref|NM_001030680.1| Gallus gallus spermatid perinuclear RNA binding protein (STRBP), mRNA Length = 2665 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ccgggggctgcggcggggccggcg 339 |||||||||||| ||||||||||| Sbjct: 63 ccgggggctgcgccggggccggcg 86
>ref|NM_196408.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0044I14.7), mRNA Length = 2373 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 225 tgggcggacgagttcgccgagttcgcgg 252 |||||||| |||||||||||||| |||| Sbjct: 2330 tgggcggatgagttcgccgagtttgcgg 2303
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 ccggcgccggagccggcgtg 194 |||||||||||||||||||| Sbjct: 2440508 ccggcgccggagccggcgtg 2440527
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 233 cgagttcgccgagttcgcggcggcgcgc 260 ||||| ||||| |||||||||||||||| Sbjct: 509815 cgagtccgccgcgttcgcggcggcgcgc 509842
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ccgggggctgcggcggggccggcg 339 |||||||| ||||||||||||||| Sbjct: 1217181 ccgggggcggcggcggggccggcg 1217204
>gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-434O14, complete sequence Length = 191358 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gggctgcggcggggccggcg 339 |||||||||||||||||||| Sbjct: 59210 gggctgcggcggggccggcg 59191
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 233 cgagttcgccgagttcgcggcggcgcgc 260 ||||| ||||| |||||||||||||||| Sbjct: 3352020 cgagtccgccgcgttcgcggcggcgcgc 3352047
>emb|AJ877185.1| Uncultured fungus 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), clone YJ4-43 Length = 491 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gtggagatggctcccggggg 322 |||||||||||||||||||| Sbjct: 39 gtggagatggctcccggggg 20
>emb|AJ877184.1| Uncultured fungus ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), clone YJ4-34 Length = 488 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gtggagatggctcccggggg 322 |||||||||||||||||||| Sbjct: 36 gtggagatggctcccggggg 17
>emb|AJ877182.1| Uncultured fungus 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), clone YJ4-27 Length = 490 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gtggagatggctcccggggg 322 |||||||||||||||||||| Sbjct: 39 gtggagatggctcccggggg 20
>emb|AJ877198.1| Uncultured fungus ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), clone YJ4-92 Length = 488 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gtggagatggctcccggggg 322 |||||||||||||||||||| Sbjct: 36 gtggagatggctcccggggg 17
>emb|AJ877197.1| Uncultured fungus ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), clone YJ4-91 Length = 488 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gtggagatggctcccggggg 322 |||||||||||||||||||| Sbjct: 36 gtggagatggctcccggggg 17
>emb|AJ877202.1| Uncultured fungus ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), clone YJ4-II9 Length = 488 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gtggagatggctcccggggg 322 |||||||||||||||||||| Sbjct: 36 gtggagatggctcccggggg 17
>gb|DQ001323.1| Helicoverpa assulta acetylcholinesterase 1-type mRNA, complete cds Length = 2927 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gggctgcggcggggccggcg 339 |||||||||||||||||||| Sbjct: 306 gggctgcggcggggccggcg 287
>emb|X74291.1|SRGBS1G S.rochei bgs1 gene for beta-glucosidase Length = 1500 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ggcggcgcgccggggcgcgc 270 |||||||||||||||||||| Sbjct: 1392 ggcggcgcgccggggcgcgc 1373
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ccgggggctgcggcggggccggcg 339 |||||||| ||||||||||||||| Sbjct: 183193 ccgggggcggcggcggggccggcg 183216
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 233 cgagttcgccgagttcgcggcggcgcgc 260 ||||| ||||| |||||||||||||||| Sbjct: 3083308 cgagtccgccgcgttcgcggcggcgcgc 3083335
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ccgggggctgcggcggggccggcg 339 |||||||| ||||||||||||||| Sbjct: 231361 ccgggggcggcggcggggccggcg 231384
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 tcgccgagttcgcggcggcg 257 |||||||||||||||||||| Sbjct: 64775 tcgccgagttcgcggcggcg 64794
>emb|AJ720770.1| Gallus gallus mRNA for hypothetical protein, clone 25e3 Length = 2665 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ccgggggctgcggcggggccggcg 339 |||||||||||| ||||||||||| Sbjct: 63 ccgggggctgcgccggggccggcg 86
>gb|AC137561.2| Homo sapiens 12 BAC RP11-678N14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131993 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gcaccactggcccggcgccg 183 |||||||||||||||||||| Sbjct: 60561 gcaccactggcccggcgccg 60542
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cgtggagcaccatggccacg 210 |||||||||||||||||||| Sbjct: 2159565 cgtggagcaccatggccacg 2159584
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 agctgttgcgcattgccggg 94 |||||||||||||||||||| Sbjct: 4189233 agctgttgcgcattgccggg 4189252 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 tgagcgactcggtggccttcgtgg 306 ||||||| |||||||||||||||| Sbjct: 4064125 tgagcgaatcggtggccttcgtgg 4064148
>emb|AJ000693.1|HVAJ693 Hordeum vulgare mRNA for 4-hydroxyphenylpyruvate dioxygenase Length = 1565 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 acgagttcgccgagttcgcggcgg 255 ||||||||||||||||| |||||| Sbjct: 706 acgagttcgccgagttcacggcgg 729
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 cggacgagttcgccgagttcgcgg 252 |||||| ||||||||||||||||| Sbjct: 1498244 cggacgtgttcgccgagttcgcgg 1498267
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ggcggcgcgccggggcgcgc 270 |||||||||||||||||||| Sbjct: 33483 ggcggcgcgccggggcgcgc 33502
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 agctgttgcgcattgccggg 94 |||||||||||||||||||| Sbjct: 5817585 agctgttgcgcattgccggg 5817566
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cggcggcgcgccggggcgcg 269 |||||||||||||||||||| Sbjct: 1438989 cggcggcgcgccggggcgcg 1438970
>gb|M73686.1|GIARGLSD Giardia duodenalis small subunit rRNA, 3' end, large subunit rRNA, 5' end and 5.8S rRNA Length = 349 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ggcggcgcgccggggcgcgc 270 |||||||||||||||||||| Sbjct: 242 ggcggcgcgccggggcgcgc 223 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,982,685 Number of Sequences: 3902068 Number of extensions: 1982685 Number of successful extensions: 48805 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46866 Number of HSP's gapped (non-prelim): 1934 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
