ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48c01 |
|---|---|
| Clone Library Name | barley_pub |
>DAPA2_WHEAT (P24847) Dihydrodipicolinate synthase 2, chloroplast precursor (EC| 4.2.1.52) (DHDPS 2) Length = 377 Score = 216 bits (549), Expect = 3e-56 Identities = 107/147 (72%), Positives = 109/147 (74%) Frame = +2 Query: 17 MMAAQPTASPGARLGWKGPGXXXXXXXXXXXXXXXXXXXXHRVSRGKFSAAAITTDDYLP 196 MMAAQPTA+PG RLGWK PG HRV RGKFSAAAITTDDYLP Sbjct: 1 MMAAQPTANPGVRLGWKAPGALASPPRLALSRSAAAPLASHRVGRGKFSAAAITTDDYLP 60 Query: 197 MRSTEVKNRTSVDGIKSLRLITAIKTPYLPDGRFDLEAYDSLINTQINXXXXXXXXXXXX 376 MRSTEVKNRTSVDGIKSLRLITA+KTPYLPDGRFDLEAYDSLINTQIN Sbjct: 61 MRSTEVKNRTSVDGIKSLRLITAVKTPYLPDGRFDLEAYDSLINTQINGGAEGVIVGGTT 120 Query: 377 XXXHLMSWDEHIMLIGHTVNCFGTNIK 457 HLMSWDEHIMLIGHTVNCFGTNIK Sbjct: 121 GEGHLMSWDEHIMLIGHTVNCFGTNIK 147
>DAPA1_WHEAT (P24846) Dihydrodipicolinate synthase 1, chloroplast precursor (EC| 4.2.1.52) (DHDPS 1) Length = 388 Score = 171 bits (434), Expect = 6e-43 Identities = 83/106 (78%), Positives = 87/106 (82%) Frame = +2 Query: 140 RVSRGKFSAAAITTDDYLPMRSTEVKNRTSVDGIKSLRLITAIKTPYLPDGRFDLEAYDS 319 RVS+GKF+ AA+T DDYLPMRSTEVKNRTS DGIKSLRLITA+KTPYLPDGRFDLEAYDS Sbjct: 53 RVSKGKFAVAAVTLDDYLPMRSTEVKNRTSTDGIKSLRLITAVKTPYLPDGRFDLEAYDS 112 Query: 320 LINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLIGHTVNCFGTNIK 457 LINTQIN HLMSWDEHIMLIGHTVNCFG NIK Sbjct: 113 LINTQINGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGANIK 158
>DAPA_MAIZE (P26259) Dihydrodipicolinate synthase, chloroplast precursor (EC| 4.2.1.52) (DHDPS) Length = 380 Score = 152 bits (385), Expect = 3e-37 Identities = 76/103 (73%), Positives = 78/103 (75%) Frame = +2 Query: 149 RGKFSAAAITTDDYLPMRSTEVKNRTSVDGIKSLRLITAIKTPYLPDGRFDLEAYDSLIN 328 RGK S AAIT DDYLPMRSTEVKNRTS D I LRLITA+KTPYLPDGRFDLEAYDSLIN Sbjct: 48 RGKVSLAAITLDDYLPMRSTEVKNRTSTDDITRLRLITAVKTPYLPDGRFDLEAYDSLIN 107 Query: 329 TQINXXXXXXXXXXXXXXXHLMSWDEHIMLIGHTVNCFGTNIK 457 QI HLMSWDEHIMLIGHTVNCFG+ IK Sbjct: 108 MQIEGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGSRIK 150
>DAPA_COILA (Q39535) Dihydrodipicolinate synthase, chloroplast precursor (EC| 4.2.1.52) (DHDPS) Length = 377 Score = 148 bits (374), Expect = 6e-36 Identities = 73/102 (71%), Positives = 77/102 (75%) Frame = +2 Query: 152 GKFSAAAITTDDYLPMRSTEVKNRTSVDGIKSLRLITAIKTPYLPDGRFDLEAYDSLINT 331 G+ +AIT DDYLPMRSTEVKNRTS D I SLRLITA+KTPYLPDGRFDLEAYDSLIN Sbjct: 46 GRGKVSAITLDDYLPMRSTEVKNRTSTDDITSLRLITAVKTPYLPDGRFDLEAYDSLINM 105 Query: 332 QINXXXXXXXXXXXXXXXHLMSWDEHIMLIGHTVNCFGTNIK 457 QI HLMSWDEHIMLIGHTVNCFG+ IK Sbjct: 106 QIEGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGSRIK 147
>DAPA_TOBAC (Q42948) Dihydrodipicolinate synthase, chloroplast precursor (EC| 4.2.1.52) (DHDPS) Length = 359 Score = 132 bits (331), Expect = 6e-31 Identities = 66/106 (62%), Positives = 74/106 (69%) Frame = +2 Query: 140 RVSRGKFSAAAITTDDYLPMRSTEVKNRTSVDGIKSLRLITAIKTPYLPDGRFDLEAYDS 319 R +R + AA+ +LPMRS EVKNRT D IK+LRLITAIKTPYLPDGRFDLEAYD+ Sbjct: 24 RTTRWRSPRAAVIPSFHLPMRSNEVKNRTFADDIKALRLITAIKTPYLPDGRFDLEAYDT 83 Query: 320 LINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLIGHTVNCFGTNIK 457 L+N QI LMSWDEHIMLIGHTVNCFG +IK Sbjct: 84 LVNLQIENGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK 129
>DAPA2_ARATH (Q9FVC8) Dihydrodipicolinate synthase 2, chloroplast precursor (EC| 4.2.1.52) (DHDPS 2) Length = 365 Score = 129 bits (325), Expect = 3e-30 Identities = 65/106 (61%), Positives = 74/106 (69%) Frame = +2 Query: 140 RVSRGKFSAAAITTDDYLPMRSTEVKNRTSVDGIKSLRLITAIKTPYLPDGRFDLEAYDS 319 R S+ AA+ + +LPMRS EVKNRT+ D IK+LR+ITAIKTPYLPDGRFDLEAYD Sbjct: 30 RSSKWVSPKAAVVPNFHLPMRSLEVKNRTNTDDIKALRVITAIKTPYLPDGRFDLEAYDD 89 Query: 320 LINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLIGHTVNCFGTNIK 457 L+N QI LMSWDEHIMLIGHTVNCFG +IK Sbjct: 90 LVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK 135
>DAPA1_ARATH (Q9LZX6) Dihydrodipicolinate synthase 1, chloroplast precursor (EC| 4.2.1.52) (DHDPS 1) Length = 365 Score = 127 bits (319), Expect = 1e-29 Identities = 62/97 (63%), Positives = 70/97 (72%) Frame = +2 Query: 167 AAITTDDYLPMRSTEVKNRTSVDGIKSLRLITAIKTPYLPDGRFDLEAYDSLINTQINXX 346 AA+ + +LPMRS E KNRT+ D I+SLR+ITAIKTPYLPDGRFDL+AYD L+NTQI Sbjct: 39 AAVVPNFHLPMRSLEDKNRTNTDDIRSLRVITAIKTPYLPDGRFDLQAYDDLVNTQIENG 98 Query: 347 XXXXXXXXXXXXXHLMSWDEHIMLIGHTVNCFGTNIK 457 LMSWDEHIMLIGHTVNCFG IK Sbjct: 99 AEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGRIK 135
>DAPA_SOYBN (Q42800) Dihydrodipicolinate synthase, chloroplast precursor (EC| 4.2.1.52) (DHDPS) Length = 332 Score = 122 bits (306), Expect = 4e-28 Identities = 60/99 (60%), Positives = 71/99 (71%) Frame = +2 Query: 161 SAAAITTDDYLPMRSTEVKNRTSVDGIKSLRLITAIKTPYLPDGRFDLEAYDSLINTQIN 340 ++AA+ + +LPMRS E+KNRTS + IK+LRLITAIKTPYLPDGRFDLEAYD L+N QI Sbjct: 4 NSAAVKPNFHLPMRSFELKNRTSPEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIG 63 Query: 341 XXXXXXXXXXXXXXXHLMSWDEHIMLIGHTVNCFGTNIK 457 LMSW+EHI+LI HTVNCFG IK Sbjct: 64 QGAEGVIVGGTTGEGQLMSWEEHIILIAHTVNCFGGKIK 102
>DAPA_XANCP (Q8P9V6) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 34.3 bits (77), Expect = 0.16 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +2 Query: 254 LITAIKTPYLPDGRFDLEAYDSLINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLI 421 +ITA+ TP+ PDG DL+A+ L+ Q++ +S DE+ L+ Sbjct: 6 IITALATPFGPDGTLDLDAWRRLLEQQLHGGVQGIVVAGSTGEAAALSDDEYDTLV 61
>DAPA_XANAC (Q8PLN5) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 33.9 bits (76), Expect = 0.20 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +2 Query: 254 LITAIKTPYLPDGRFDLEAYDSLINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLI 421 +ITA+ TP+ PDG DL+A+ L+ Q++ +S DE+ L+ Sbjct: 6 IITALATPFGPDGALDLDAWRRLLEQQLHGGVQGLVVAGSTGEAAALSDDEYDTLL 61
>DAPA_BRUSU (Q8G1R0) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 293 Score = 31.6 bits (70), Expect = 1.0 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +2 Query: 257 ITAIKTPYLPDGRFDLEAYDSLINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLI 421 ITA+ TP+ +G FD +A+ + +N QI +S DEH +I Sbjct: 6 ITALVTPFDREGAFDEKAFRAFVNWQIEEGTKGLVPVGTTGETPTLSHDEHKRVI 60
>DAPA_BRUME (Q8YG60) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 293 Score = 31.6 bits (70), Expect = 1.0 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +2 Query: 257 ITAIKTPYLPDGRFDLEAYDSLINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLI 421 ITA+ TP+ +G FD +A+ + +N QI +S DEH +I Sbjct: 6 ITALVTPFDREGAFDEKAFRAFVNWQIEEGTKGLVPVGTTGETPTLSHDEHKRVI 60
>DAPA_BRUAB (Q57E96) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 293 Score = 31.6 bits (70), Expect = 1.0 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +2 Query: 257 ITAIKTPYLPDGRFDLEAYDSLINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLI 421 ITA+ TP+ +G FD +A+ + +N QI +S DEH +I Sbjct: 6 ITALVTPFDREGAFDEKAFRAFVNWQIEEGTKGLVPVGTTGETPTLSHDEHKRVI 60
>DAPA_VIBCH (Q9KQ47) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 292 Score = 30.8 bits (68), Expect = 1.7 Identities = 13/59 (22%), Positives = 26/59 (44%) Frame = +2 Query: 257 ITAIKTPYLPDGRFDLEAYDSLINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLIGHTV 433 I A+ TP+ PDG D + L++ ++ ++ +EH+ ++ TV Sbjct: 6 IVALITPFTPDGEVDYISLKKLVDFHVDAGTDAIVSVGTTGESATLTVEEHVKVVAKTV 64
>DAPA_WOLSU (Q7M7L6) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 295 Score = 30.0 bits (66), Expect = 2.9 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = +2 Query: 257 ITAIKTPYLPDGRFDLEAYDSLINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLIGHTVN 436 ++A+ TP+ +GR D E Y+ LI QI +S EH I V Sbjct: 8 MSALITPFR-NGRLDTETYEKLIQRQIRHGMDALVPVGTTGESATLSHSEHKECIEIAVK 66 Query: 437 -CFGTNIK 457 C GT IK Sbjct: 67 VCQGTGIK 74
>DAPA_RHILO (P58207) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 293 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/51 (27%), Positives = 23/51 (45%) Frame = +2 Query: 257 ITAIKTPYLPDGRFDLEAYDSLINTQINXXXXXXXXXXXXXXXHLMSWDEH 409 +TA+ TP+ GRFD +A+ + + Q+ +S DEH Sbjct: 6 LTALVTPFEKSGRFDEKAFRAFVEWQLGEGTTGLVPVGTTGESPTLSHDEH 56
>GYRB_PSEPU (P13364) DNA gyrase subunit B (EC 5.99.1.3)| Length = 806 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/59 (22%), Positives = 30/59 (50%) Frame = +2 Query: 161 SAAAITTDDYLPMRSTEVKNRTSVDGIKSLRLITAIKTPYLPDGRFDLEAYDSLINTQI 337 S+ + + Y+ KN+ + G + +TAI + +PD +F + D L+++++ Sbjct: 289 SSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 347
>DAPA_VIBVY (Q7MIL2) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 292 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/59 (22%), Positives = 23/59 (38%) Frame = +2 Query: 257 ITAIKTPYLPDGRFDLEAYDSLINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLIGHTV 433 I A+ TP+ DG D + L+ I ++ +EH+ ++ TV Sbjct: 6 IVALLTPFKADGEVDFDGLQKLVEYHIAAGTNGIVAVGTTGESSTLTVEEHVKVVNKTV 64
>DAPA_VIBVU (Q8DBB0) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 292 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/59 (22%), Positives = 23/59 (38%) Frame = +2 Query: 257 ITAIKTPYLPDGRFDLEAYDSLINTQINXXXXXXXXXXXXXXXHLMSWDEHIMLIGHTV 433 I A+ TP+ DG D + L+ I ++ +EH+ ++ TV Sbjct: 6 IVALLTPFKADGEVDFDGLQKLVEYHIAAGTNGIVAVGTTGESSTLTVEEHVKVVNKTV 64
>DAPA_CHLAB (Q5L5G7) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 288 Score = 28.9 bits (63), Expect = 6.6 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = +2 Query: 248 LRLITAIKTPYLPDGRFDLEAYDSLINTQ 334 ++L+TA TP+LPD D ++++L+ Q Sbjct: 1 MKLLTASVTPFLPDHSIDFLSFENLLRFQ 29
>GYRB_BUCAP (P29435) DNA gyrase subunit B (EC 5.99.1.3)| Length = 803 Score = 28.5 bits (62), Expect = 8.6 Identities = 12/41 (29%), Positives = 25/41 (60%) Frame = +2 Query: 215 KNRTSVDGIKSLRLITAIKTPYLPDGRFDLEAYDSLINTQI 337 KN+T + G + +TAI + +PD +F + D L+++++ Sbjct: 305 KNKTIITGEDTREGLTAIISIKIPDPKFSSQTKDKLVSSEV 345
>DAPA_XYLFT (Q87AT3) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 28.5 bits (62), Expect = 8.6 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +2 Query: 254 LITAIKTPYLPDGRFDLEAYDSLINTQI 337 +ITA+ TP+ DG FD +A+ L++ Q+ Sbjct: 6 IITALVTPFDRDGAFDRDAWIRLLDMQL 33
>DAPA_XYLFA (Q9PER5) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 28.5 bits (62), Expect = 8.6 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +2 Query: 254 LITAIKTPYLPDGRFDLEAYDSLINTQI 337 +ITA+ TP+ DG FD +A+ L++ Q+ Sbjct: 6 IITALVTPFDRDGAFDRDAWIRLLDLQL 33 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,161,855 Number of Sequences: 219361 Number of extensions: 700801 Number of successful extensions: 1723 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1682 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1723 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
