ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast48b10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK109657.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F06, full insert sequence Length = 1206 Score = 276 bits (139), Expect = 6e-71 Identities = 252/290 (86%) Strand = Plus / Plus Query: 161 gggggcacgcgctcggagtggtctccctcgctgcgcatcccgccggggtcatagccgccg 220 |||| ||||||||||| ||||| || ||||| || || ||||| || | | | ||||||| Sbjct: 289 ggggccacgcgctcggggtggtgtcgctcgccgcccaccccgcgggcgccgtcgccgccg 348 Query: 221 cggtctccatcgacagccacatccgcgtcttcgacgtcgactccggcgcctccgtcacca 280 | |||||| |||||||| || ||||||||||||| || ||||| ||| |||||||| ||| Sbjct: 349 ccgtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccgtcgcca 408 Query: 281 cgctcgatgccgcgccctccgaggtctggggcgtccagttccaccccaagggtattgctc 340 ||||||| ||| | |||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct: 409 cgctcgaggcccctccctccgaggtctggggcatccagttccaccccaagggtagtgctc 468 Query: 341 tggctgcagctggtggtggcagtggatcagtaaaactgtgggacacggagaagtggncac 400 ||||||||||||||||||||||||||||||| || || |||||||| ||||||||| | Sbjct: 469 tggctgcagctggtggtggcagtggatcagtgaagctctgggacacagagaagtggaagc 528 Query: 401 ctattgccagccttcctgttccccgtccagagggagctcgccccgataaa 450 | ||| |||||||| ||||||| |||||||||||||||||||| |||||| Sbjct: 529 caattaccagccttgctgttccgcgtccagagggagctcgccctgataaa 578 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Plus Query: 2 tcaagtcggtggacggggctcacgaggactcgatctgggcggccgcctgggtgcccgctg 61 ||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| | Sbjct: 127 tcaagtcggtggacggggcccacgaggagtccatctgggcggcggcgtgggtgcccgcgg 186 Query: 62 ctgaccaccgccccacggcgctgctcctcaccggctcgatcgacgagaccgtccgc 117 | |||||||||||| ||||||||||||| || ||| | ||||||||||||||||| Sbjct: 187 cggaccaccgccccgcggcgctgctcctgacgggcgccctcgacgagaccgtccgc 242
>emb|AM261084.1| Oryza sativa (indica cultivar-group) mRNA for putative meiotic recombination protein REC14 (rec14 gene), clone 14-2 Length = 1077 Score = 272 bits (137), Expect = 9e-70 Identities = 211/236 (89%) Strand = Plus / Plus Query: 215 ccgccgcggtctccatcgacagccacatccgcgtcttcgacgtcgactccggcgcctccg 274 ||||||| |||||| |||||||| || ||||||||||||| || ||||| ||| |||||| Sbjct: 195 ccgccgccgtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccg 254 Query: 275 tcaccacgctcgatgccgcgccctccgaggtctggggcgtccagttccaccccaagggta 334 || |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 255 tcgccacgctcgaggccccgccctccgaggtctggggcatccagttccaccccaagggta 314 Query: 335 ttgctctggctgcagctggtggtggcagtggatcagtaaaactgtgggacacggagaagt 394 |||||||||||||||||||||||||||||||||||| || || |||||||| ||||||| Sbjct: 315 gtgctctggctgcagctggtggtggcagtggatcagtgaagctctgggacacagagaagt 374 Query: 395 ggncacctattgccagccttcctgttccccgtccagagggagctcgccccgataaa 450 || || ||| |||||||| ||||||| |||||||||||||||||||| |||||| Sbjct: 375 ggaagccaattaccagccttgctgttccgcgtccagagggagctcgccctgataaa 430 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2 tcaagtcggtggacggggctcacgag 27 ||||||||||||||||||| |||||| Sbjct: 135 tcaagtcggtggacggggcccacgag 160
>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0682E05, complete sequence Length = 162223 Score = 141 bits (71), Expect = 2e-30 Identities = 109/122 (89%) Strand = Plus / Plus Query: 329 agggtattgctctggctgcagctggtggtggcagtggatcagtaaaactgtgggacacgg 388 |||||| |||||||||||||||||||||||||||||||||||| || || |||||||| | Sbjct: 125291 agggtagtgctctggctgcagctggtggtggcagtggatcagtgaagctctgggacacag 125350 Query: 389 agaagtggncacctattgccagccttcctgttccccgtccagagggagctcgccccgata 448 |||||||| || ||| |||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 125351 agaagtggaagccaattaccagccttgctgttccgcgtccagagggagctcgccctgata 125410 Query: 449 aa 450 || Sbjct: 125411 aa 125412 Score = 141 bits (71), Expect = 2e-30 Identities = 146/171 (85%) Strand = Plus / Plus Query: 161 gggggcacgcgctcggagtggtctccctcgctgcgcatcccgccggggtcatagccgccg 220 |||| ||||||||||| ||||| || ||||| || || ||||| || | | | ||||||| Sbjct: 123762 ggggccacgcgctcggggtggtgtcgctcgccgcccaccccgcgggcgccgtcgccgccg 123821 Query: 221 cggtctccatcgacagccacatccgcgtcttcgacgtcgactccggcgcctccgtcacca 280 | |||||| |||||||| || ||||||||||||| || ||||| ||| |||||||| ||| Sbjct: 123822 ccgtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccgtcgcca 123881 Query: 281 cgctcgatgccgcgccctccgaggtctggggcgtccagttccaccccaagg 331 ||||||| ||| | |||||||||||||||||| |||||||||||||||||| Sbjct: 123882 cgctcgaggcccctccctccgaggtctggggcatccagttccaccccaagg 123932 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Plus Query: 2 tcaagtcggtggacggggctcacgaggactcgatctgggcggccgcctgggtgcccgctg 61 ||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| | Sbjct: 123600 tcaagtcggtggacggggcccacgaggagtccatctgggcggcggcgtgggtgcccgcgg 123659 Query: 62 ctgaccaccgccccacggcgctgctcctcaccggctcgatcgacgagaccgtccgc 117 | |||||||||||| ||||||||||||| || ||| | ||||||||||||||||| Sbjct: 123660 cggaccaccgccccgcggcgctgctcctgacgggcgccctcgacgagaccgtccgc 123715
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 141 bits (71), Expect = 2e-30 Identities = 109/122 (89%) Strand = Plus / Plus Query: 329 agggtattgctctggctgcagctggtggtggcagtggatcagtaaaactgtgggacacgg 388 |||||| |||||||||||||||||||||||||||||||||||| || || |||||||| | Sbjct: 25635244 agggtagtgctctggctgcagctggtggtggcagtggatcagtgaagctctgggacacag 25635303 Query: 389 agaagtggncacctattgccagccttcctgttccccgtccagagggagctcgccccgata 448 |||||||| || ||| |||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 25635304 agaagtggaagccaattaccagccttgctgttccgcgtccagagggagctcgccctgata 25635363 Query: 449 aa 450 || Sbjct: 25635364 aa 25635365 Score = 141 bits (71), Expect = 2e-30 Identities = 146/171 (85%) Strand = Plus / Plus Query: 161 gggggcacgcgctcggagtggtctccctcgctgcgcatcccgccggggtcatagccgccg 220 |||| ||||||||||| ||||| || ||||| || || ||||| || | | | ||||||| Sbjct: 25633715 ggggccacgcgctcggggtggtgtcgctcgccgcccaccccgcgggcgccgtcgccgccg 25633774 Query: 221 cggtctccatcgacagccacatccgcgtcttcgacgtcgactccggcgcctccgtcacca 280 | |||||| |||||||| || ||||||||||||| || ||||| ||| |||||||| ||| Sbjct: 25633775 ccgtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccgtcgcca 25633834 Query: 281 cgctcgatgccgcgccctccgaggtctggggcgtccagttccaccccaagg 331 ||||||| ||| | |||||||||||||||||| |||||||||||||||||| Sbjct: 25633835 cgctcgaggcccctccctccgaggtctggggcatccagttccaccccaagg 25633885 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Plus Query: 2 tcaagtcggtggacggggctcacgaggactcgatctgggcggccgcctgggtgcccgctg 61 ||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| | Sbjct: 25633553 tcaagtcggtggacggggcccacgaggagtccatctgggcggcggcgtgggtgcccgcgg 25633612 Query: 62 ctgaccaccgccccacggcgctgctcctcaccggctcgatcgacgagaccgtccgc 117 | |||||||||||| ||||||||||||| || ||| | ||||||||||||||||| Sbjct: 25633613 cggaccaccgccccgcggcgctgctcctgacgggcgccctcgacgagaccgtccgc 25633668
>dbj|AK101516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046G03, full insert sequence Length = 4213 Score = 141 bits (71), Expect = 2e-30 Identities = 109/122 (89%) Strand = Plus / Minus Query: 329 agggtattgctctggctgcagctggtggtggcagtggatcagtaaaactgtgggacacgg 388 |||||| |||||||||||||||||||||||||||||||||||| || || |||||||| | Sbjct: 3801 agggtagtgctctggctgcagctggtggtggcagtggatcagtgaagctctgggacacag 3742 Query: 389 agaagtggncacctattgccagccttcctgttccccgtccagagggagctcgccccgata 448 |||||||| || ||| |||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 3741 agaagtggaagccaattaccagccttgctgttccgcgtccagagggagctcgccctgata 3682 Query: 449 aa 450 || Sbjct: 3681 aa 3680
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 141 bits (71), Expect = 2e-30 Identities = 109/122 (89%) Strand = Plus / Plus Query: 329 agggtattgctctggctgcagctggtggtggcagtggatcagtaaaactgtgggacacgg 388 |||||| |||||||||||||||||||||||||||||||||||| || || |||||||| | Sbjct: 25953914 agggtagtgctctggctgcagctggtggtggcagtggatcagtgaagctctgggacacag 25953973 Query: 389 agaagtggncacctattgccagccttcctgttccccgtccagagggagctcgccccgata 448 |||||||| || ||| |||||||| ||||||| |||||||||||||||||||| |||| Sbjct: 25953974 agaagtggaagccaattaccagccttgctgttccgcgtccagagggagctcgccctgata 25954033 Query: 449 aa 450 || Sbjct: 25954034 aa 25954035 Score = 141 bits (71), Expect = 2e-30 Identities = 146/171 (85%) Strand = Plus / Plus Query: 161 gggggcacgcgctcggagtggtctccctcgctgcgcatcccgccggggtcatagccgccg 220 |||| ||||||||||| ||||| || ||||| || || ||||| || | | | ||||||| Sbjct: 25952385 ggggccacgcgctcggggtggtgtcgctcgccgcccaccccgcgggcgccgtcgccgccg 25952444 Query: 221 cggtctccatcgacagccacatccgcgtcttcgacgtcgactccggcgcctccgtcacca 280 | |||||| |||||||| || ||||||||||||| || ||||| ||| |||||||| ||| Sbjct: 25952445 ccgtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccgtcgcca 25952504 Query: 281 cgctcgatgccgcgccctccgaggtctggggcgtccagttccaccccaagg 331 ||||||| ||| | |||||||||||||||||| |||||||||||||||||| Sbjct: 25952505 cgctcgaggcccctccctccgaggtctggggcatccagttccaccccaagg 25952555 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Plus Query: 2 tcaagtcggtggacggggctcacgaggactcgatctgggcggccgcctgggtgcccgctg 61 ||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| | Sbjct: 25952223 tcaagtcggtggacggggcccacgaggagtccatctgggcggcggcgtgggtgcccgcgg 25952282 Query: 62 ctgaccaccgccccacggcgctgctcctcaccggctcgatcgacgagaccgtccgc 117 | |||||||||||| ||||||||||||| || ||| | ||||||||||||||||| Sbjct: 25952283 cggaccaccgccccgcggcgctgctcctgacgggcgccctcgacgagaccgtccgc 25952338
>emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on chromosome 9 Contains a kertain pseudogene, complete sequence Length = 122613 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 334 attgctctggctgcagctggtgg 356 ||||||||||||||||||||||| Sbjct: 13178 attgctctggctgcagctggtgg 13200
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 123 gcagcccgacgatctcgccgtcg 145 ||||||||||||||||||||||| Sbjct: 3402805 gcagcccgacgatctcgccgtcg 3402827 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ccgacgatctcgccgtcgcg 147 |||||||||||||||||||| Sbjct: 2322747 ccgacgatctcgccgtcgcg 2322766
>ref|XM_233422.3| PREDICTED: Rattus norvegicus forkhead box D2 (predicted) (Foxd2_predicted), mRNA Length = 3373 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Minus Query: 343 gctgcagctggtggtggcagtgg 365 ||||||||||||||||||||||| Sbjct: 274 gctgcagctggtggtggcagtgg 252
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 306 ctggggcgtccagttccacccc 327 |||||||||||||||||||||| Sbjct: 4967203 ctggggcgtccagttccacccc 4967224
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 306 ctggggcgtccagttccacccc 327 |||||||||||||||||||||| Sbjct: 1939346 ctggggcgtccagttccacccc 1939325
>gb|AE012073.1| Xanthomonas axonopodis pv. citri str. 306, section 451 of 469 of the complete genome Length = 11201 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 306 ctggggcgtccagttccacccc 327 |||||||||||||||||||||| Sbjct: 9885 ctggggcgtccagttccacccc 9906
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 gcagcccgacgatctcgccgtcgcg 147 ||||||||||||||||||| ||||| Sbjct: 1086135 gcagcccgacgatctcgccttcgcg 1086111
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 123 gcagcccgacgatctcgccgtcgcg 147 ||||||||||||||||||| ||||| Sbjct: 2829963 gcagcccgacgatctcgccctcgcg 2829987
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 gcagcccgacgatctcgccgtcgcg 147 ||||||||||||||||||| ||||| Sbjct: 786443 gcagcccgacgatctcgccttcgcg 786419
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 303 ggtctggggcgtccagttccacccc 327 ||||||||| ||||||||||||||| Sbjct: 2610863 ggtctggggggtccagttccacccc 2610839
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 123 gcagcccgacgatctcgccgtcgcg 147 ||||| ||||||||||||||||||| Sbjct: 3907961 gcagcgcgacgatctcgccgtcgcg 3907985 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 gcagcccgacgatctcgccgtcgcg 147 ||||||||||||||||||| ||||| Sbjct: 1306574 gcagcccgacgatctcgccttcgcg 1306550
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 123 gcagcccgacgatctcgccgtcgcg 147 ||||| ||||||||||||||||||| Sbjct: 3649773 gcagcgcgacgatctcgccgtcgcg 3649797 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 gcagcccgacgatctcgccgtcgcg 147 ||||||||||||||||||| ||||| Sbjct: 1210680 gcagcccgacgatctcgccttcgcg 1210656
>emb|AJ457205.1|UBA457205 Uncultured bacterium partial nirS gene for putative nitrite reductase, clone BS1295 Length = 839 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 tcaccacgctcgatgccgcgc 295 ||||||||||||||||||||| Sbjct: 202 tcaccacgctcgatgccgcgc 222
>emb|AJ457199.1|UBA457199 Uncultured bacterium partial nirS gene for putative nitrite reductase, clone BS1282 Length = 839 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 tcaccacgctcgatgccgcgc 295 ||||||||||||||||||||| Sbjct: 202 tcaccacgctcgatgccgcgc 222
>emb|AJ457195.1|UBA457195 Uncultured bacterium partial nirS gene for putative nitrite reductase, clone BS1266 Length = 839 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 tcaccacgctcgatgccgcgc 295 ||||||||||||||||||||| Sbjct: 202 tcaccacgctcgatgccgcgc 222
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 ctccggcgcctccgtcaccac 281 ||||||||||||||||||||| Sbjct: 563307 ctccggcgcctccgtcaccac 563327
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 gcagcccgacgatctcgccgtcgcg 147 ||||| ||||||||||||||||||| Sbjct: 534112 gcagcgcgacgatctcgccgtcgcg 534088
>ref|NM_210976.1| Eremothecium gossypii AFR075Cp (AFR075C), mRNA Length = 2223 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 ctccggcgcctccgtcaccac 281 ||||||||||||||||||||| Sbjct: 438 ctccggcgcctccgtcaccac 418
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 ccgtcaccacgctcgatgccg 292 ||||||||||||||||||||| Sbjct: 980921 ccgtcaccacgctcgatgccg 980941
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 123 gcagcccgacgatctcgccgtcgcg 147 ||||| ||||||||||||||||||| Sbjct: 3354102 gcagcgcgacgatctcgccgtcgcg 3354126
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcctcaccggctcgatcgac 105 |||||||||||||||||||| Sbjct: 1374533 tcctcaccggctcgatcgac 1374514
>ref|XM_748377.1| Aspergillus fumigatus Af293 cytoplasmic dynein heavy chain (Afu5g11810) partial mRNA Length = 13107 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 gcggtctccatcgacagcca 239 |||||||||||||||||||| Sbjct: 986 gcggtctccatcgacagcca 967
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 ccgacgatctcgccgtcgcg 147 |||||||||||||||||||| Sbjct: 3712008 ccgacgatctcgccgtcgcg 3711989
>emb|AL355362.7| Human DNA sequence from clone RP3-480M22 on chromosome 6 Contains the 5' end of the gene for p53-induced protein PIGPC1 (PERP) and a CpG island, complete sequence Length = 23812 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ctgctgaccaccgccccacg 78 |||||||||||||||||||| Sbjct: 12434 ctgctgaccaccgccccacg 12415
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 cccgacgatctcgccgtcgc 146 |||||||||||||||||||| Sbjct: 90842 cccgacgatctcgccgtcgc 90861
>gb|AE011635.1| Xanthomonas axonopodis pv. citri str. 306, section 13 of 469 of the complete genome Length = 11848 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 cctcaccggctcgatcgacg 106 |||||||||||||||||||| Sbjct: 2162 cctcaccggctcgatcgacg 2143
>ref|NM_135437.3| Drosophila melanogaster CG3748-RB, transcript variant B (CG3748), mRNA Length = 1657 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cagctggtggtggcagtgga 366 |||||||||||||||||||| Sbjct: 1114 cagctggtggtggcagtgga 1133
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcagcccgacgatctcgccg 142 |||||||||||||||||||| Sbjct: 1224228 gcagcccgacgatctcgccg 1224247
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 cagcccgacgatctcgccgtcgcg 147 ||||||||||||||||||| |||| Sbjct: 1768067 cagcccgacgatctcgccggcgcg 1768044
>gb|AC092492.1|AC092492 Drosophila melanogaster, chromosome 2L, region 30B-30E, BAC clone BACR20B09, complete sequence Length = 177997 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cagctggtggtggcagtgga 366 |||||||||||||||||||| Sbjct: 123469 cagctggtggtggcagtgga 123488
>gb|AC092122.5| Homo sapiens chromosome 16 clone RP11-102F12, complete sequence Length = 174809 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 tgcagctggtggtggcagtg 364 |||||||||||||||||||| Sbjct: 95452 tgcagctggtggtggcagtg 95433
>gb|AC136601.2| Homo sapiens chromosome 5 clone RP11-1259L22, complete sequence Length = 186323 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cagctggtggtggcagtgga 366 |||||||||||||||||||| Sbjct: 75390 cagctggtggtggcagtgga 75371
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 ctgggcggccgcctgggtgcccgc 59 |||||||||| ||||||||||||| Sbjct: 4229828 ctgggcggccccctgggtgcccgc 4229851
>gb|AY075281.1| Drosophila melanogaster AT30262 full insert cDNA Length = 962 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cagctggtggtggcagtgga 366 |||||||||||||||||||| Sbjct: 394 cagctggtggtggcagtgga 413
>dbj|AB116234.1| Streptomyces venezuelae papA, papC, papB, ORFIV genes for 4-amino-4-deoxychorismate synthase, 4-amino-4-deoxyprephenate dehydrogenase, 4-amino-4-deoxychorismate mutase, hypothetical protein, complete cds Length = 5251 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tggggcgtccagttccaccc 326 |||||||||||||||||||| Sbjct: 1137 tggggcgtccagttccaccc 1156
>gb|AE003624.3| Drosophila melanogaster chromosome 2L, section 33 of 83 of the complete sequence Length = 270771 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cagctggtggtggcagtgga 366 |||||||||||||||||||| Sbjct: 177244 cagctggtggtggcagtgga 177263
>gb|AC005125.1|AC005125 Drosophila melanogaster, chromosome 2L, region 30A7-30A8, P1 clone DS06478, complete sequence Length = 66178 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cagctggtggtggcagtgga 366 |||||||||||||||||||| Sbjct: 1177 cagctggtggtggcagtgga 1158
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cggcgctgctcctcaccggc 96 |||||||||||||||||||| Sbjct: 2672309 cggcgctgctcctcaccggc 2672290
>gb|AC093290.4| Homo sapiens chromosome 5 clone RP11-47L17, complete sequence Length = 179443 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cagctggtggtggcagtgga 366 |||||||||||||||||||| Sbjct: 61423 cagctggtggtggcagtgga 61442 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,476,299 Number of Sequences: 3902068 Number of extensions: 2476299 Number of successful extensions: 55740 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53919 Number of HSP's gapped (non-prelim): 1821 length of query: 453 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 431 effective length of database: 17,147,199,772 effective search space: 7390443101732 effective search space used: 7390443101732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
