ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast48b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 196 4e-47
2gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 196 4e-47
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 196 4e-47
4gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genom... 196 4e-47
5dbj|AK103569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 4e-47
6ref|NM_185078.1| Oryza sativa (japonica cultivar-group), mRNA 194 2e-46
7gb|AY105888.1| Zea mays PCO125513 mRNA sequence 161 2e-36
8gb|BT016579.1| Zea mays clone Contig412 mRNA sequence 145 1e-31
9ref|XM_477253.1| Oryza sativa (japonica cultivar-group), mRNA 141 2e-30
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
11dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
12dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
13dbj|AK111786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
14dbj|AK104078.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
15ref|NM_127230.2| Arabidopsis thaliana MSI2 AT2G16780 (MSI2) mRNA... 44 0.39
16gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 44 0.39
17gb|AC158114.7| Mus musculus chromosome 5, clone RP23-371A16, com... 44 0.39
18gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I21 ma... 44 0.39
19gb|AY056814.1| Arabidopsis thaliana At2g16780/T24I21.19 mRNA, co... 44 0.39
20emb|BX819792.1|CNS0AAFN Arabidopsis thaliana Full-length cDNA Co... 44 0.39
21emb|BX820147.1|CNS0A84P Arabidopsis thaliana Full-length cDNA Co... 44 0.39
22gb|AY088045.1| Arabidopsis thaliana clone 40637 mRNA, complete s... 44 0.39
23gb|AF016847.1|AF016847 Arabidopsis thaliana WD-40 repeat protein... 44 0.39
24gb|AC007745.3| Homo sapiens BAC clone RP11-518J18 from 7, comple... 40 6.0
25gb|AC122160.21| Medicago truncatula clone mth2-23d6, complete se... 40 6.0
26gb|AC152068.17| Medicago truncatula clone mth2-29p8, complete se... 40 6.0
27gb|AY145882.1| Rattus norvegicus cyclin-dependent kinase inhibit... 40 6.0
28emb|AL596207.10| Mouse DNA sequence from clone RP23-336J1 on chr... 40 6.0
29gb|AC159537.24| Medicago truncatula clone mth2-188k3, complete s... 40 6.0
30gb|DQ350896.1| Rattus norvegicus strain COP/CrCrl p16 (Cdkn2a) g... 40 6.0
31gb|DQ350895.1| Rattus norvegicus strain ACI/SegHsd p16 (Cdkn2a) ... 40 6.0
32gb|DQ350894.1| Rattus norvegicus strain BN/SsNHsd p16 (Cdkn2a) g... 40 6.0
33dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
34dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.0
35dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
36dbj|AK072773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
37gb|AC109198.9| Mus musculus chromosome 15, clone RP23-31G10, com... 40 6.0
38dbj|AB081658.1| Rattus norvegicus Cdkn2a gene for cyclin depende... 40 6.0 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  196 bits (99), Expect = 4e-47
 Identities = 174/199 (87%)
 Strand = Plus / Plus

                                                                            
Query: 245      catgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattga 304
                ||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 34636265 catgtcgtcaaacaagatagagcttgaccacaaggacatggtccatgattctgccatcga 34636324

                                                                            
Query: 305      ctactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacat 364
                |||||| |||||| ||||||||||||| ||||| |||||||| ||| |||||| || |||
Sbjct: 34636325 ctactacgggaagagccttgccacagcctcctcagactccaccgtgcagatcagcagcat 34636384

                                                                            
Query: 365      tggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgt 424
                |||||||||||| || || ||||||||  |||| |||||||  || |||||||| |||||
Sbjct: 34636385 tggaggtgcatccgcgccatcccagctgcttgcaaccctcagcggacactatggacctgt 34636444

                                   
Query: 425      atggcgtgttggatgggcc 443
                 |||||||||| |||||||
Sbjct: 34636445 gtggcgtgttgcatgggcc 34636463
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>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
             sequence
          Length = 164236

 Score =  196 bits (99), Expect = 4e-47
 Identities = 174/199 (87%)
 Strand = Plus / Plus

                                                                         
Query: 245   catgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattga 304
             ||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 93982 catgtcgtcaaacaagatagagcttgaccacaaggacatggtccatgattctgccatcga 94041

                                                                         
Query: 305   ctactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacat 364
             |||||| |||||| ||||||||||||| ||||| |||||||| ||| |||||| || |||
Sbjct: 94042 ctactacgggaagagccttgccacagcctcctcagactccaccgtgcagatcagcagcat 94101

                                                                         
Query: 365   tggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgt 424
             |||||||||||| || || ||||||||  |||| |||||||  || |||||||| |||||
Sbjct: 94102 tggaggtgcatccgcgccatcccagctgcttgcaaccctcagcggacactatggacctgt 94161

                                
Query: 425   atggcgtgttggatgggcc 443
              |||||||||| |||||||
Sbjct: 94162 gtggcgtgttgcatgggcc 94180
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  196 bits (99), Expect = 4e-47
 Identities = 174/199 (87%)
 Strand = Plus / Plus

                                                                            
Query: 245      catgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattga 304
                ||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 34726337 catgtcgtcaaacaagatagagcttgaccacaaggacatggtccatgattctgccatcga 34726396

                                                                            
Query: 305      ctactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacat 364
                |||||| |||||| ||||||||||||| ||||| |||||||| ||| |||||| || |||
Sbjct: 34726397 ctactacgggaagagccttgccacagcctcctcagactccaccgtgcagatcagcagcat 34726456

                                                                            
Query: 365      tggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgt 424
                |||||||||||| || || ||||||||  |||| |||||||  || |||||||| |||||
Sbjct: 34726457 tggaggtgcatccgcgccatcccagctgcttgcaaccctcagcggacactatggacctgt 34726516

                                   
Query: 425      atggcgtgttggatgggcc 443
                 |||||||||| |||||||
Sbjct: 34726517 gtggcgtgttgcatgggcc 34726535
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>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence,
            complete sequence
          Length = 129302

 Score =  196 bits (99), Expect = 4e-47
 Identities = 174/199 (87%)
 Strand = Plus / Minus

                                                                        
Query: 245  catgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattga 304
            ||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 7068 catgtcgtcaaacaagatagagcttgaccacaaggacatggtccatgattctgccatcga 7009

                                                                        
Query: 305  ctactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacat 364
            |||||| |||||| ||||||||||||| ||||| |||||||| ||| |||||| || |||
Sbjct: 7008 ctactacgggaagagccttgccacagcctcctcagactccaccgtgcagatcagcagcat 6949

                                                                        
Query: 365  tggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgt 424
            |||||||||||| || || ||||||||  |||| |||||||  || |||||||| |||||
Sbjct: 6948 tggaggtgcatccgcgccatcccagctgcttgcaaccctcagcggacactatggacctgt 6889

                               
Query: 425  atggcgtgttggatgggcc 443
             |||||||||| |||||||
Sbjct: 6888 gtggcgtgttgcatgggcc 6870
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>dbj|AK103569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132M13, full
           insert sequence
          Length = 1369

 Score =  196 bits (99), Expect = 4e-47
 Identities = 174/199 (87%)
 Strand = Plus / Plus

                                                                       
Query: 245 catgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattga 304
           ||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 155 catgtcgtcaaacaagatagagcttgaccacaaggacatggtccatgattctgccatcga 214

                                                                       
Query: 305 ctactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacat 364
           |||||| |||||| ||||||||||||| ||||| |||||||| ||| |||||| || |||
Sbjct: 215 ctactacgggaagagccttgccacagcctcctcagactccaccgtgcagatcagcagcat 274

                                                                       
Query: 365 tggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgt 424
           |||||||||||| || || ||||||||  |||| |||||||  || |||||||| |||||
Sbjct: 275 tggaggtgcatccgcgccatcccagctgcttgcaaccctcagcggacactatggacctgt 334

                              
Query: 425 atggcgtgttggatgggcc 443
            |||||||||| |||||||
Sbjct: 335 gtggcgtgttgcatgggcc 353
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>ref|NM_185078.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1213

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Plus

                                                                       
Query: 246 atgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattgac 305
           |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 1   atgtcgtcaaacaagatagagcttgaccacaaggacatggtccatgattctgccatcgac 60

                                                                       
Query: 306 tactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacatt 365
           ||||| |||||| ||||||||||||| ||||| |||||||| ||| |||||| || ||||
Sbjct: 61  tactacgggaagagccttgccacagcctcctcagactccaccgtgcagatcagcagcatt 120

                                                                       
Query: 366 ggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgta 425
           ||||||||||| || || ||||||||  |||| |||||||  || |||||||| ||||| 
Sbjct: 121 ggaggtgcatccgcgccatcccagctgcttgcaaccctcagcggacactatggacctgtg 180

                             
Query: 426 tggcgtgttggatgggcc 443
           |||||||||| |||||||
Sbjct: 181 tggcgtgttgcatgggcc 198
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>gb|AY105888.1| Zea mays PCO125513 mRNA sequence
          Length = 1559

 Score =  161 bits (81), Expect = 2e-36
 Identities = 165/193 (85%)
 Strand = Plus / Plus

                                                                       
Query: 243 aacatgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccatt 302
           |||||||| ||||||||||||||| | || |||||||||||||| |||||||||||||| 
Sbjct: 298 aacatgtcatcgaagaagatagagttggatcacaaggacatggtccatgattctgccatc 357

                                                                       
Query: 303 gactactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaac 362
           ||||||||||| |||||||||||||| || || || |||| ||| |||||||||  ||||
Sbjct: 358 gactactatggcaagcgccttgccactgcctcttcagacttcaccgtgaagatcgtcaac 417

                                                                       
Query: 363 attggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcct 422
           ||||| |  |||  |||||| |||||| || |||| || || | ||||||||||||||||
Sbjct: 418 attggtgcggcaaatgccccatcccaggtccttgcaacgcttagtggccactatggtcct 477

                        
Query: 423 gtatggcgtgttg 435
           || ||||||||||
Sbjct: 478 gtgtggcgtgttg 490
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>gb|BT016579.1| Zea mays clone Contig412 mRNA sequence
          Length = 1409

 Score =  145 bits (73), Expect = 1e-31
 Identities = 163/193 (84%)
 Strand = Plus / Plus

                                                                       
Query: 243 aacatgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccatt 302
           |||||||| ||||||||||||||| | || |||||||||||||| |||||||||||||| 
Sbjct: 259 aacatgtcatcgaagaagatagagttggatcacaaggacatggtccatgattctgccatc 318

                                                                       
Query: 303 gactactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaac 362
           ||||||||||| |||||||||||||| || || || |||| ||| |||||||||   |||
Sbjct: 319 gactactatggcaagcgccttgccactgcctcttcagacttcaccgtgaagatcgttaac 378

                                                                       
Query: 363 attggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcct 422
           ||||| |  |||  |||||| |||||| || | || || || | ||||||||||||||||
Sbjct: 379 attggtgcggcaaatgccccatcccaggtcctggcaacgcttagtggccactatggtcct 438

                        
Query: 423 gtatggcgtgttg 435
           || ||||||||||
Sbjct: 439 gtgtggcgtgttg 451
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>ref|XM_477253.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1405

 Score =  141 bits (71), Expect = 2e-30
 Identities = 167/199 (83%)
 Strand = Plus / Plus

                                                                       
Query: 245 catgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattga 304
           |||||| |||||||| |||||| | ||||||||||||||||| |||||||| || || ||
Sbjct: 162 catgtcatcgaagaaaatagagttggaccacaaggacatggtccatgattcagctatcga 221

                                                                       
Query: 305 ctactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacat 364
           ||||||||| ||||||||||| || || ||||| ||||||||||| |||||| ||| |||
Sbjct: 222 ctactatggcaagcgccttgcaactgcctcctcagactccactgtcaagatctccagcat 281

                                                                       
Query: 365 tggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgt 424
            || ||   ||||||||| ||||||||| |||| || ||||  || |||||||| |||||
Sbjct: 282 aggcggcaaatctgccccatcccagctccttgcaacactcagcgggcactatggccctgt 341

                              
Query: 425 atggcgtgttggatgggcc 443
            |||||||| | |||||||
Sbjct: 342 gtggcgtgtcgcatgggcc 360
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  141 bits (71), Expect = 2e-30
 Identities = 167/199 (83%)
 Strand = Plus / Minus

                                                                           
Query: 245     catgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattga 304
               |||||| |||||||| |||||| | ||||||||||||||||| |||||||| || || ||
Sbjct: 8176961 catgtcatcgaagaaaatagagttggaccacaaggacatggtccatgattcagctatcga 8176902

                                                                           
Query: 305     ctactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacat 364
               ||||||||| ||||||||||| || || ||||| ||||||||||| |||||| ||| |||
Sbjct: 8176901 ctactatggcaagcgccttgcaactgcctcctcagactccactgtcaagatctccagcat 8176842

                                                                           
Query: 365     tggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgt 424
                || ||   ||||||||| ||||||||| |||| || ||||  || |||||||| |||||
Sbjct: 8176841 aggcggcaaatctgccccatcccagctccttgcaacactcagcgggcactatggccctgt 8176782

                                  
Query: 425     atggcgtgttggatgggcc 443
                |||||||| | |||||||
Sbjct: 8176781 gtggcgtgtcgcatgggcc 8176763
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>dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0003K21
          Length = 158810

 Score =  141 bits (71), Expect = 2e-30
 Identities = 167/199 (83%)
 Strand = Plus / Minus

                                                                         
Query: 245   catgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattga 304
             |||||| |||||||| |||||| | ||||||||||||||||| |||||||| || || ||
Sbjct: 59984 catgtcatcgaagaaaatagagttggaccacaaggacatggtccatgattcagctatcga 59925

                                                                         
Query: 305   ctactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacat 364
             ||||||||| ||||||||||| || || ||||| ||||||||||| |||||| ||| |||
Sbjct: 59924 ctactatggcaagcgccttgcaactgcctcctcagactccactgtcaagatctccagcat 59865

                                                                         
Query: 365   tggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgt 424
              || ||   ||||||||| ||||||||| |||| || ||||  || |||||||| |||||
Sbjct: 59864 aggcggcaaatctgccccatcccagctccttgcaacactcagcgggcactatggccctgt 59805

                                
Query: 425   atggcgtgttggatgggcc 443
              |||||||| | |||||||
Sbjct: 59804 gtggcgtgtcgcatgggcc 59786
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>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1058_C08
          Length = 117923

 Score =  141 bits (71), Expect = 2e-30
 Identities = 167/199 (83%)
 Strand = Plus / Minus

                                                                          
Query: 245    catgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattga 304
              |||||| |||||||| |||||| | ||||||||||||||||| |||||||| || || ||
Sbjct: 110733 catgtcatcgaagaaaatagagttggaccacaaggacatggtccatgattcagctatcga 110674

                                                                          
Query: 305    ctactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacat 364
              ||||||||| ||||||||||| || || ||||| ||||||||||| |||||| ||| |||
Sbjct: 110673 ctactatggcaagcgccttgcaactgcctcctcagactccactgtcaagatctccagcat 110614

                                                                          
Query: 365    tggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgt 424
               || ||   ||||||||| ||||||||| |||| || ||||  || |||||||| |||||
Sbjct: 110613 aggcggcaaatctgccccatcccagctccttgcaacactcagcgggcactatggccctgt 110554

                                 
Query: 425    atggcgtgttggatgggcc 443
               |||||||| | |||||||
Sbjct: 110553 gtggcgtgtcgcatgggcc 110535
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>dbj|AK111786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097O22, full
           insert sequence
          Length = 1417

 Score =  141 bits (71), Expect = 2e-30
 Identities = 167/199 (83%)
 Strand = Plus / Plus

                                                                       
Query: 245 catgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattga 304
           |||||| |||||||| |||||| | ||||||||||||||||| |||||||| || || ||
Sbjct: 169 catgtcatcgaagaaaatagagttggaccacaaggacatggtccatgattcagctatcga 228

                                                                       
Query: 305 ctactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacat 364
           ||||||||| ||||||||||| || || ||||| ||||||||||| |||||| ||| |||
Sbjct: 229 ctactatggcaagcgccttgcaactgcctcctcagactccactgtcaagatctccagcat 288

                                                                       
Query: 365 tggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgt 424
            || ||   ||||||||| ||||||||| |||| || ||||  || |||||||| |||||
Sbjct: 289 aggcggcaaatctgccccatcccagctccttgcaacactcagcgggcactatggccctgt 348

                              
Query: 425 atggcgtgttggatgggcc 443
            |||||||| | |||||||
Sbjct: 349 gtggcgtgtcgcatgggcc 367
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>dbj|AK104078.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-E03, full
           insert sequence
          Length = 1405

 Score =  141 bits (71), Expect = 2e-30
 Identities = 167/199 (83%)
 Strand = Plus / Plus

                                                                       
Query: 245 catgtcgtcgaagaagatagagctagaccacaaggacatggttcatgattctgccattga 304
           |||||| |||||||| |||||| | ||||||||||||||||| |||||||| || || ||
Sbjct: 162 catgtcatcgaagaaaatagagttggaccacaaggacatggtccatgattcagctatcga 221

                                                                       
Query: 305 ctactatgggaagcgccttgccacagcttcctcggactccactgtgaagatcaccaacat 364
           ||||||||| ||||||||||| || || ||||| ||||||||||| |||||| ||| |||
Sbjct: 222 ctactatggcaagcgccttgcaactgcctcctcagactccactgtcaagatctccagcat 281

                                                                       
Query: 365 tggaggtgcatctgccccgtcccagctcgttgccaccctcactggccactatggtcctgt 424
            || ||   ||||||||| ||||||||| |||| || ||||  || |||||||| |||||
Sbjct: 282 aggcggcaaatctgccccatcccagctccttgcaacactcagcgggcactatggccctgt 341

                              
Query: 425 atggcgtgttggatgggcc 443
            |||||||| | |||||||
Sbjct: 342 gtggcgtgtcgcatgggcc 360
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>ref|NM_127230.2| Arabidopsis thaliana MSI2 AT2G16780 (MSI2) mRNA, complete cds
          Length = 1451

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 324 gccacagcttcctcggactccactgt 349
           |||||||||||||| |||||||||||
Sbjct: 879 gccacagcttcctcagactccactgt 904
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 64      cagcgtcaccaccggcgcctcc 85
               ||||||||||||||||||||||
Sbjct: 1206215 cagcgtcaccaccggcgcctcc 1206194
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>gb|AC158114.7| Mus musculus chromosome 5, clone RP23-371A16, complete sequence
          Length = 167040

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 394    ttgccaccctcactggccacta 415
              ||||||||||||||||||||||
Sbjct: 132652 ttgccaccctcactggccacta 132631
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>gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I21 map mi398, complete
             sequence
          Length = 112792

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 324   gccacagcttcctcggactccactgt 349
             |||||||||||||| |||||||||||
Sbjct: 86675 gccacagcttcctcagactccactgt 86650
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>gb|AY056814.1| Arabidopsis thaliana At2g16780/T24I21.19 mRNA, complete cds
          Length = 1463

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 324 gccacagcttcctcggactccactgt 349
           |||||||||||||| |||||||||||
Sbjct: 879 gccacagcttcctcagactccactgt 904
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>emb|BX819792.1|CNS0AAFN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS2ZA06 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1426

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 324 gccacagcttcctcggactccactgt 349
           |||||||||||||| |||||||||||
Sbjct: 872 gccacagcttcctcagactccactgt 897
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>emb|BX820147.1|CNS0A84P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS80ZA11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1427

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 324 gccacagcttcctcggactccactgt 349
           |||||||||||||| |||||||||||
Sbjct: 857 gccacagcttcctcagactccactgt 882
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>gb|AY088045.1| Arabidopsis thaliana clone 40637 mRNA, complete sequence
          Length = 1427

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 324 gccacagcttcctcggactccactgt 349
           |||||||||||||| |||||||||||
Sbjct: 858 gccacagcttcctcagactccactgt 883
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>gb|AF016847.1|AF016847 Arabidopsis thaliana WD-40 repeat protein (MSI2) mRNA, complete cds
          Length = 1425

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 324 gccacagcttcctcggactccactgt 349
           |||||||||||||| |||||||||||
Sbjct: 834 gccacagcttcctcagactccactgt 859
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>gb|AC007745.3| Homo sapiens BAC clone RP11-518J18 from 7, complete sequence
          Length = 51565

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 353  gatcaccaacattggaggtg 372
            ||||||||||||||||||||
Sbjct: 5331 gatcaccaacattggaggtg 5312
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>gb|AC122160.21| Medicago truncatula clone mth2-23d6, complete sequence
          Length = 125105

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   aagaagatagagctagacca 274
             ||||||||||||||||||||
Sbjct: 42266 aagaagatagagctagacca 42285
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>gb|AC152068.17| Medicago truncatula clone mth2-29p8, complete sequence
          Length = 118589

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aagaagatagagctagacca 274
             ||||||||||||||||||||
Sbjct: 17035 aagaagatagagctagacca 17016
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>gb|AY145882.1| Rattus norvegicus cyclin-dependent kinase inhibitor 2A (Cdkn2a)
           gene, promoter and 5' UTR
          Length = 400

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 203 ctccttccttcctctgaggg 222
           ||||||||||||||||||||
Sbjct: 314 ctccttccttcctctgaggg 295
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>emb|AL596207.10| Mouse DNA sequence from clone RP23-336J1 on chromosome 11 Contains the
             5' end of the Sparc gene for secreted acidic cysteine rich
             glycoprotein, the Atox1 gene for ATX1 (antioxidant protein
             1) homolog 1 (yeast), an upregulated during skeletal
             muscle growth 5 (Usmg5) pseudogene, the gene for
             Ras-GTPase-activating protein SH3-domain binding protein
             (G3bp-pending) (C87777), a novel gene, the Glra1 gene for
             glycine receptor, alpha 1 subunit, a novel gene, a
             ubiquitously expressed transcript (Uxt) pseudogene and one
             CpG island, complete sequence
          Length = 204037

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   tctccttccttcctctgagg 221
             ||||||||||||||||||||
Sbjct: 28497 tctccttccttcctctgagg 28516
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>gb|AC159537.24| Medicago truncatula clone mth2-188k3, complete sequence
          Length = 119507

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   aagaagatagagctagacca 274
             ||||||||||||||||||||
Sbjct: 24526 aagaagatagagctagacca 24545
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>gb|DQ350896.1| Rattus norvegicus strain COP/CrCrl p16 (Cdkn2a) gene, promoter region
            and 5' UTR
          Length = 1412

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 203  ctccttccttcctctgaggg 222
            ||||||||||||||||||||
Sbjct: 1329 ctccttccttcctctgaggg 1310
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>gb|DQ350895.1| Rattus norvegicus strain ACI/SegHsd p16 (Cdkn2a) gene, promoter
            region and 5' UTR
          Length = 1471

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 203  ctccttccttcctctgaggg 222
            ||||||||||||||||||||
Sbjct: 1388 ctccttccttcctctgaggg 1369
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>gb|DQ350894.1| Rattus norvegicus strain BN/SsNHsd p16 (Cdkn2a) gene, promoter region
            and 5' UTR
          Length = 1413

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 203  ctccttccttcctctgaggg 222
            ||||||||||||||||||||
Sbjct: 1330 ctccttccttcctctgaggg 1311
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 64      cagcgtcaccaccggcgcct 83
               ||||||||||||||||||||
Sbjct: 2587517 cagcgtcaccaccggcgcct 2587536
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 68      gtcaccaccggcgcctcctc 87
               ||||||||||||||||||||
Sbjct: 2731401 gtcaccaccggcgcctcctc 2731382
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>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710H01
          Length = 187107

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    cagcgtcaccaccggcgcct 83
             ||||||||||||||||||||
Sbjct: 42858 cagcgtcaccaccggcgcct 42877
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>dbj|AK072773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138L23, full
           insert sequence
          Length = 970

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 64  cagcgtcaccaccggcgcct 83
           ||||||||||||||||||||
Sbjct: 374 cagcgtcaccaccggcgcct 355
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>gb|AC109198.9| Mus musculus chromosome 15, clone RP23-31G10, complete sequence
          Length = 207069

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    ttcctctgagggccaaagtt 230
              ||||||||||||||||||||
Sbjct: 169964 ttcctctgagggccaaagtt 169945
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>dbj|AB081658.1| Rattus norvegicus Cdkn2a gene for cyclin dependent kinase inhibitor
            2A, partial cds
          Length = 1561

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 203  ctccttccttcctctgaggg 222
            ||||||||||||||||||||
Sbjct: 1349 ctccttccttcctctgaggg 1330


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,181,427
Number of Sequences: 3902068
Number of extensions: 3181427
Number of successful extensions: 68174
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68014
Number of HSP's gapped (non-prelim): 159
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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