ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast48b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474138.1| Oryza sativa (japonica cultivar-group), predic... 109 7e-21
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
3dbj|AK120939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 7e-21
4emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 109 7e-21
5emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4,... 109 7e-21
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
7dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
8dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
9gb|AY616055.1| Prototheca wickerhamii plastid phosphoglycerate d... 50 0.005
10ref|XM_516195.1| PREDICTED: Pan troglodytes similar to RIKEN cDN... 44 0.33
11dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.33
12ref|XM_522959.1| PREDICTED: Pan troglodytes similar to RIKEN cDN... 42 1.3
13gb|BC036198.1| Homo sapiens similar to RIKEN cDNA 0710001B24, mR... 42 1.3
14ref|NM_001033575.1| Homo sapiens similar to RIKEN cDNA 0710001B2... 42 1.3
15ref|XM_941093.1| PREDICTED: Homo sapiens chromosome 14 open read... 42 1.3
16ref|XM_040910.7| PREDICTED: Homo sapiens chromosome 14 open read... 42 1.3
17gb|AC124862.4| Homo sapiens BAC clone RP11-27M15 from 2, complet... 42 1.3
18dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.3
19dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
20dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
21dbj|AK000671.1| Homo sapiens cDNA FLJ20664 fis, clone KAIA795 42 1.3
22dbj|AK106064.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
23emb|AL161669.5|CNS01RHC Human chromosome 14 DNA sequence BAC R-7... 42 1.3
24gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.3
25gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.2
26ref|XM_480300.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
27ref|XM_507146.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.2
28gb|AC125021.12| Mus musculus chromosome 1, clone RP24-212P5, com... 40 5.2
29ref|XM_362886.1| Magnaporthe grisea 70-15 predicted protein (MG0... 40 5.2
30gb|DQ249341.1| Streptomyces hygroscopicus subsp. duamyceticus st... 40 5.2
31gb|AY947889.1| Streptomyces hygroscopicus strain AM 3672 herbimy... 40 5.2
32emb|AJ007932.2|SAR7932 Streptomyces argillaceus mithramycin bios... 40 5.2
33dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
34dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.2
35gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 gelda... 40 5.2
36dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
37dbj|AK100902.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
38gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 5.2
39dbj|AK068909.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
40emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.2 
>ref|XM_474138.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1842

 Score =  109 bits (55), Expect = 7e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                       
Query: 312 aagcccacggtgctcgtggccgagaagctgggcgccgcggggctggcgctgctccgggag 371
           ||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||| |
Sbjct: 211 aagccgacggtgctcgtggccgagaagctcggcgccgcggggctcgagctgctccggggg 270

                              
Query: 372 ttcgccaacgtcgactgct 390
           ||||||||||| |||||||
Sbjct: 271 ttcgccaacgtggactgct 289
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  109 bits (55), Expect = 7e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                            
Query: 312      aagcccacggtgctcgtggccgagaagctgggcgccgcggggctggcgctgctccgggag 371
                ||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||| |
Sbjct: 33201225 aagccgacggtgctcgtggccgagaagctcggcgccgcggggctcgagctgctccggggg 33201284

                                   
Query: 372      ttcgccaacgtcgactgct 390
                ||||||||||| |||||||
Sbjct: 33201285 ttcgccaacgtggactgct 33201303
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>dbj|AK120939.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037B01, full
           insert sequence
          Length = 2116

 Score =  109 bits (55), Expect = 7e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                       
Query: 312 aagcccacggtgctcgtggccgagaagctgggcgccgcggggctggcgctgctccgggag 371
           ||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||| |
Sbjct: 276 aagccgacggtgctcgtggccgagaagctcggcgccgcggggctcgagctgctccggggg 335

                              
Query: 372 ttcgccaacgtcgactgct 390
           ||||||||||| |||||||
Sbjct: 336 ttcgccaacgtggactgct 354
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>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete
             sequence
          Length = 118971

 Score =  109 bits (55), Expect = 7e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                         
Query: 312   aagcccacggtgctcgtggccgagaagctgggcgccgcggggctggcgctgctccgggag 371
             ||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||| |
Sbjct: 91901 aagccgacggtgctcgtggccgagaagctcggcgccgcggggctcgagctgctccggggg 91960

                                
Query: 372   ttcgccaacgtcgactgct 390
             ||||||||||| |||||||
Sbjct: 91961 ttcgccaacgtggactgct 91979
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>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02,
             complete sequence
          Length = 165745

 Score =  109 bits (55), Expect = 7e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                         
Query: 312   aagcccacggtgctcgtggccgagaagctgggcgccgcggggctggcgctgctccgggag 371
             ||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||| |
Sbjct: 83874 aagccgacggtgctcgtggccgagaagctcggcgccgcggggctcgagctgctccggggg 83933

                                
Query: 372   ttcgccaacgtcgactgct 390
             ||||||||||| |||||||
Sbjct: 83934 ttcgccaacgtggactgct 83952
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                            
Query: 318      acggtgctcgtggccgagaagctgggcgccgcggggctggcgctgctccgggagttcgcc 377
                |||||||| ||| | ||||||||||||| ||||||||||| |||||| |||  |||||| 
Sbjct: 26474679 acggtgcttgtgacggagaagctgggcgacgcggggctggagctgctgcggaggttcgcg 26474620

                            
Query: 378      aacgtcgactgc 389
                ||||| ||||||
Sbjct: 26474619 aacgtggactgc 26474608



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 343     gcgccgcggggctggcgctgc 363
               |||||||||||||||||||||
Sbjct: 7230386 gcgccgcggggctggcgctgc 7230366
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>dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0709F06
          Length = 170964

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                         
Query: 318   acggtgctcgtggccgagaagctgggcgccgcggggctggcgctgctccgggagttcgcc 377
             |||||||| ||| | ||||||||||||| ||||||||||| |||||| |||  |||||| 
Sbjct: 86718 acggtgcttgtgacggagaagctgggcgacgcggggctggagctgctgcggaggttcgcg 86659

                         
Query: 378   aacgtcgactgc 389
             ||||| ||||||
Sbjct: 86658 aacgtggactgc 86647
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>dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0460H04
          Length = 166490

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 318  acggtgctcgtggccgagaagctgggcgccgcggggctggcgctgctccgggagttcgcc 377
            |||||||| ||| | ||||||||||||| ||||||||||| |||||| |||  |||||| 
Sbjct: 8332 acggtgcttgtgacggagaagctgggcgacgcggggctggagctgctgcggaggttcgcg 8273

                        
Query: 378  aacgtcgactgc 389
            ||||| ||||||
Sbjct: 8272 aacgtggactgc 8261
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>gb|AY616055.1| Prototheca wickerhamii plastid phosphoglycerate dehydrogenase mRNA,
           partial cds; nuclear gene for plastid product
          Length = 694

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 309 ggcaagcccacggtgctcgtggccgagaagctgggcgccgcgggg 353
           |||| |||||| ||||| ||||||||||||||||| |||| ||||
Sbjct: 169 ggcaggcccaccgtgctggtggccgagaagctgggagccgggggg 213
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>ref|XM_516195.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 0710001B24
           (LOC460067), mRNA
          Length = 919

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 333 gagaagctgggcgccgcggggc 354
           ||||||||||||||||||||||
Sbjct: 11  gagaagctgggcgccgcggggc 32
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 326     cgtggccgagaagctgggcgccgcgg 351
               ||||||||| ||||||||||||||||
Sbjct: 2822198 cgtggccgacaagctgggcgccgcgg 2822223



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 326     cgtggccgagaagctgggcgccgc 349
               ||||||||| ||||||||||||||
Sbjct: 4318863 cgtggccgacaagctgggcgccgc 4318840



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 326     cgtggccgagaagctgggcgccgc 349
               ||||||||| ||||||||||||||
Sbjct: 3490144 cgtggccgacaagctgggcgccgc 3490121
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>ref|XM_522959.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 1200009I06
            (LOC467564), mRNA
          Length = 2787

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 339  ctgggcgccgcggggctggcgctgc 363
            ||||||||| |||||||||||||||
Sbjct: 1555 ctgggcgccccggggctggcgctgc 1579
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>gb|BC036198.1| Homo sapiens similar to RIKEN cDNA 0710001B24, mRNA (cDNA clone
           MGC:39555 IMAGE:5298326), complete cds
          Length = 3475

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 334 agaagctgggcgccgcggggc 354
           |||||||||||||||||||||
Sbjct: 395 agaagctgggcgccgcggggc 415
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>ref|NM_001033575.1| Homo sapiens similar to RIKEN cDNA 0710001B24 (LOC285193), mRNA
          Length = 1555

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 334 agaagctgggcgccgcggggc 354
           |||||||||||||||||||||
Sbjct: 643 agaagctgggcgccgcggggc 663
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>ref|XM_941093.1| PREDICTED: Homo sapiens chromosome 14 open reading frame 73
            (C14orf73), mRNA
          Length = 2526

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 339  ctgggcgccgcggggctggcgctgc 363
            ||||||||| |||||||||||||||
Sbjct: 1084 ctgggcgccccggggctggcgctgc 1108
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>ref|XM_040910.7| PREDICTED: Homo sapiens chromosome 14 open reading frame 73
            (C14orf73), mRNA
          Length = 2526

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 339  ctgggcgccgcggggctggcgctgc 363
            ||||||||| |||||||||||||||
Sbjct: 1084 ctgggcgccccggggctggcgctgc 1108
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>gb|AC124862.4| Homo sapiens BAC clone RP11-27M15 from 2, complete sequence
          Length = 160111

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 334   agaagctgggcgccgcggggc 354
             |||||||||||||||||||||
Sbjct: 74711 agaagctgggcgccgcggggc 74691
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 315    cccacggtgctcgtggccgag 335
              |||||||||||||||||||||
Sbjct: 939561 cccacggtgctcgtggccgag 939581
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>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0068B06
          Length = 143712

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 343    gcgccgcggggctggcgctgc 363
              |||||||||||||||||||||
Sbjct: 107797 gcgccgcggggctggcgctgc 107777
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>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0052G07
          Length = 156207

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 343   gcgccgcggggctggcgctgc 363
             |||||||||||||||||||||
Sbjct: 65390 gcgccgcggggctggcgctgc 65370
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>dbj|AK000671.1| Homo sapiens cDNA FLJ20664 fis, clone KAIA795
          Length = 2340

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 339 ctgggcgccgcggggctggcgctgc 363
           ||||||||| |||||||||||||||
Sbjct: 407 ctgggcgccccggggctggcgctgc 431
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>dbj|AK106064.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G08, full
           insert sequence
          Length = 1431

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 343 gcgccgcggggctggcgctgc 363
           |||||||||||||||||||||
Sbjct: 715 gcgccgcggggctggcgctgc 735
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>emb|AL161669.5|CNS01RHC Human chromosome 14 DNA sequence BAC R-736N17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192462

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 339    ctgggcgccgcggggctggcgctgc 363
              ||||||||| |||||||||||||||
Sbjct: 136468 ctgggcgccccggggctggcgctgc 136444
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 315    cccacggtgctcgtggccgag 335
              |||||||||||||||||||||
Sbjct: 619244 cccacggtgctcgtggccgag 619264
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 329     ggccgagaagctgggcgccg 348
               ||||||||||||||||||||
Sbjct: 3635455 ggccgagaagctgggcgccg 3635474



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 328    tggccgagaagctgggcgccgcgg 351
              ||||||| ||||||||||||||||
Sbjct: 748751 tggccgacaagctgggcgccgcgg 748728
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>ref|XM_480300.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1361

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 357 gcgctgctccgggagttcgccaac 380
           ||||||||||||||| ||||||||
Sbjct: 564 gcgctgctccgggagctcgccaac 587
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>ref|XM_507146.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1590_E05.28
           mRNA
          Length = 1473

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 357 gcgctgctccgggagttcgccaac 380
           ||||||||||||||| ||||||||
Sbjct: 567 gcgctgctccgggagctcgccaac 590
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>gb|AC125021.12| Mus musculus chromosome 1, clone RP24-212P5, complete sequence
          Length = 174626

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   gggcgccgcggggctggcgc 360
             ||||||||||||||||||||
Sbjct: 95660 gggcgccgcggggctggcgc 95641
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>ref|XM_362886.1| Magnaporthe grisea 70-15 predicted protein (MG08551.4) partial cds
          Length = 1752

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 342 ggcgccgcggggctggcgctgctc 365
           |||||||||||||||| |||||||
Sbjct: 643 ggcgccgcggggctggggctgctc 666
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>gb|DQ249341.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427
             geldanamycin biosynthesis gene cluster, partial sequence
          Length = 75920

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   cgccgcggggctggcgctgc 363
             ||||||||||||||||||||
Sbjct: 34458 cgccgcggggctggcgctgc 34477
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>gb|AY947889.1| Streptomyces hygroscopicus strain AM 3672 herbimycin polyketide
             biosynthetic gene cluster, complete sequence
          Length = 86941

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   cgccgcggggctggcgctgc 363
             ||||||||||||||||||||
Sbjct: 47080 cgccgcggggctggcgctgc 47099
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>emb|AJ007932.2|SAR7932 Streptomyces argillaceus mithramycin biosynthetic genes
          Length = 18977

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  ccgcggtggccgtcgagggc 311
            ||||||||||||||||||||
Sbjct: 2893 ccgcggtggccgtcgagggc 2912
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 357     gcgctgctccgggagttcgccaac 380
               ||||||||||||||| ||||||||
Sbjct: 4206005 gcgctgctccgggagctcgccaac 4205982
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 329     ggccgagaagctgggcgccg 348
               ||||||||||||||||||||
Sbjct: 4197412 ggccgagaagctgggcgccg 4197431
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>gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 geldanamycin biosynthesis
             gene cluster, partial sequence
          Length = 69644

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   cgccgcggggctggcgctgc 363
             ||||||||||||||||||||
Sbjct: 26677 cgccgcggggctggcgctgc 26696
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>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1590_E05
          Length = 148205

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 357    gcgctgctccgggagttcgccaac 380
              ||||||||||||||| ||||||||
Sbjct: 105628 gcgctgctccgggagctcgccaac 105605
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>dbj|AK100902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131J04, full
           insert sequence
          Length = 1361

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 357 gcgctgctccgggagttcgccaac 380
           ||||||||||||||| ||||||||
Sbjct: 564 gcgctgctccgggagctcgccaac 587
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 290     cgccgcggtggccgtcgagg 309
               ||||||||||||||||||||
Sbjct: 2673918 cgccgcggtggccgtcgagg 2673937
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>dbj|AK068909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003M02, full
           insert sequence
          Length = 1473

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 357 gcgctgctccgggagttcgccaac 380
           ||||||||||||||| ||||||||
Sbjct: 567 gcgctgctccgggagctcgccaac 590
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 345     gccgcggggctggcgctgct 364
               ||||||||||||||||||||
Sbjct: 1032897 gccgcggggctggcgctgct 1032878


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 736,979
Number of Sequences: 3902068
Number of extensions: 736979
Number of successful extensions: 17677
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17327
Number of HSP's gapped (non-prelim): 350
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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