| Clone Name | bast48b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192856.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1209 Score = 361 bits (182), Expect = 1e-96 Identities = 275/306 (89%) Strand = Plus / Plus Query: 147 gcggcgaggggcgaggacgggctgcccaggccgccggcgtggatgatgcggcaggctggg 206 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 151 gcggcgaggggcgaggacgggctgccgcggccgccggcgtggatgatgcggcaggccggg 210 Query: 207 cggtacatggcgtcgtaccaggcgctgtccaagcgccacccttcgttccgggagcggtcg 266 |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| Sbjct: 211 cggtacatggcggagtaccaggcgctcgccaagcgccacccctcgttccgggagcggtcc 270 Query: 267 gagaccaccgacctcatcgtcgaaatcacgctacagccctggcacgccttcgcacccgac 326 ||||| ||||| ||||||||||| |||||||| || || |||| ||||||||| |||||| Sbjct: 271 gagacgaccgaactcatcgtcgagatcacgctgcaaccgtggcgcgccttcgcgcccgac 330 Query: 327 ggcgtcatcctattctcggacatactcacgccgctgccggccatcggggtgccgtttgat 386 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct: 331 ggcgtcatcctgttctcggacatactcacgccgctgccggccattggggtgccattcgat 390 Query: 387 atctcggaatccaaggggccggtgatccagtcgcctgtgcggacggaggaacaggtcagg 446 ||||| || ||||||||||| ||||||||||| || ||| || | ||||| ||||| ||| Sbjct: 391 atctccgactccaaggggcctgtgatccagtctcccgtgaggtccgaggagcaggtgagg 450 Query: 447 gagctc 452 |||||| Sbjct: 451 gagctc 456 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 34 ccgccgccttcctctccgcggctcctgcctcctcgtcctcc 74 |||||||||||||| ||||||| || |||||||| |||||| Sbjct: 20 ccgccgccttcctcgccgcggcgccggcctcctcctcctcc 60
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 361 bits (182), Expect = 1e-96 Identities = 275/306 (89%) Strand = Plus / Minus Query: 147 gcggcgaggggcgaggacgggctgcccaggccgccggcgtggatgatgcggcaggctggg 206 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 24823939 gcggcgaggggcgaggacgggctgccgcggccgccggcgtggatgatgcggcaggccggg 24823880 Query: 207 cggtacatggcgtcgtaccaggcgctgtccaagcgccacccttcgttccgggagcggtcg 266 |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| Sbjct: 24823879 cggtacatggcggagtaccaggcgctcgccaagcgccacccctcgttccgggagcggtcc 24823820 Query: 267 gagaccaccgacctcatcgtcgaaatcacgctacagccctggcacgccttcgcacccgac 326 ||||| ||||| ||||||||||| |||||||| || || |||| ||||||||| |||||| Sbjct: 24823819 gagacgaccgaactcatcgtcgagatcacgctgcaaccgtggcgcgccttcgcgcccgac 24823760 Query: 327 ggcgtcatcctattctcggacatactcacgccgctgccggccatcggggtgccgtttgat 386 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct: 24823759 ggcgtcatcctgttctcggacatactcacgccgctgccggccattggggtgccattcgat 24823700 Query: 387 atctcggaatccaaggggccggtgatccagtcgcctgtgcggacggaggaacaggtcagg 446 ||||| || ||||||||||| ||||||||||| || ||| || | ||||| ||||| ||| Sbjct: 24823699 atctccgactccaaggggcctgtgatccagtctcccgtgaggtccgaggagcaggtgagg 24823640 Query: 447 gagctc 452 |||||| Sbjct: 24823639 gagctc 24823634 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 34 ccgccgccttcctctccgcggctcctgcctcctcgtcctcc 74 |||||||||||||| ||||||| || |||||||| |||||| Sbjct: 24824169 ccgccgccttcctcgccgcggcgccggcctcctcctcctcc 24824129 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 62 ctcctcgtcctccacccaccgc 83 |||||||||||||||||||||| Sbjct: 23246195 ctcctcgtcctccacccaccgc 23246174 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 gactaccgctacggctacggccac 31 |||||| ||||||||||||||||| Sbjct: 9764258 gactacggctacggctacggccac 9764281
>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0501G01 Length = 154561 Score = 361 bits (182), Expect = 1e-96 Identities = 275/306 (89%) Strand = Plus / Minus Query: 147 gcggcgaggggcgaggacgggctgcccaggccgccggcgtggatgatgcggcaggctggg 206 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 47059 gcggcgaggggcgaggacgggctgccgcggccgccggcgtggatgatgcggcaggccggg 47000 Query: 207 cggtacatggcgtcgtaccaggcgctgtccaagcgccacccttcgttccgggagcggtcg 266 |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| Sbjct: 46999 cggtacatggcggagtaccaggcgctcgccaagcgccacccctcgttccgggagcggtcc 46940 Query: 267 gagaccaccgacctcatcgtcgaaatcacgctacagccctggcacgccttcgcacccgac 326 ||||| ||||| ||||||||||| |||||||| || || |||| ||||||||| |||||| Sbjct: 46939 gagacgaccgaactcatcgtcgagatcacgctgcaaccgtggcgcgccttcgcgcccgac 46880 Query: 327 ggcgtcatcctattctcggacatactcacgccgctgccggccatcggggtgccgtttgat 386 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct: 46879 ggcgtcatcctgttctcggacatactcacgccgctgccggccattggggtgccattcgat 46820 Query: 387 atctcggaatccaaggggccggtgatccagtcgcctgtgcggacggaggaacaggtcagg 446 ||||| || ||||||||||| ||||||||||| || ||| || | ||||| ||||| ||| Sbjct: 46819 atctccgactccaaggggcctgtgatccagtctcccgtgaggtccgaggagcaggtgagg 46760 Query: 447 gagctc 452 |||||| Sbjct: 46759 gagctc 46754 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 34 ccgccgccttcctctccgcggctcctgcctcctcgtcctcc 74 |||||||||||||| ||||||| || |||||||| |||||| Sbjct: 47289 ccgccgccttcctcgccgcggcgccggcctcctcctcctcc 47249
>dbj|AK106203.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-F10, full insert sequence Length = 1541 Score = 361 bits (182), Expect = 1e-96 Identities = 275/306 (89%) Strand = Plus / Plus Query: 147 gcggcgaggggcgaggacgggctgcccaggccgccggcgtggatgatgcggcaggctggg 206 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 213 gcggcgaggggcgaggacgggctgccgcggccgccggcgtggatgatgcggcaggccggg 272 Query: 207 cggtacatggcgtcgtaccaggcgctgtccaagcgccacccttcgttccgggagcggtcg 266 |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| Sbjct: 273 cggtacatggcggagtaccaggcgctcgccaagcgccacccctcgttccgggagcggtcc 332 Query: 267 gagaccaccgacctcatcgtcgaaatcacgctacagccctggcacgccttcgcacccgac 326 ||||| ||||| ||||||||||| |||||||| || || |||| ||||||||| |||||| Sbjct: 333 gagacgaccgaactcatcgtcgagatcacgctgcaaccgtggcgcgccttcgcgcccgac 392 Query: 327 ggcgtcatcctattctcggacatactcacgccgctgccggccatcggggtgccgtttgat 386 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct: 393 ggcgtcatcctgttctcggacatactcacgccgctgccggccattggggtgccattcgat 452 Query: 387 atctcggaatccaaggggccggtgatccagtcgcctgtgcggacggaggaacaggtcagg 446 ||||| || ||||||||||| ||||||||||| || ||| || | ||||| ||||| ||| Sbjct: 453 atctccgactccaaggggcctgtgatccagtctcccgtgaggtccgaggagcaggtgagg 512 Query: 447 gagctc 452 |||||| Sbjct: 513 gagctc 518 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 34 ccgccgccttcctctccgcggctcctgcctcctcgtcctcc 74 |||||||||||||| ||||||| || |||||||| |||||| Sbjct: 82 ccgccgccttcctcgccgcggcgccggcctcctcctcctcc 122
>dbj|AK072290.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018J01, full insert sequence Length = 1525 Score = 361 bits (182), Expect = 1e-96 Identities = 275/306 (89%) Strand = Plus / Plus Query: 147 gcggcgaggggcgaggacgggctgcccaggccgccggcgtggatgatgcggcaggctggg 206 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 214 gcggcgaggggcgaggacgggctgccgcggccgccggcgtggatgatgcggcaggccggg 273 Query: 207 cggtacatggcgtcgtaccaggcgctgtccaagcgccacccttcgttccgggagcggtcg 266 |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| Sbjct: 274 cggtacatggcggagtaccaggcgctcgccaagcgccacccctcgttccgggagcggtcc 333 Query: 267 gagaccaccgacctcatcgtcgaaatcacgctacagccctggcacgccttcgcacccgac 326 ||||| ||||| ||||||||||| |||||||| || || |||| ||||||||| |||||| Sbjct: 334 gagacgaccgaactcatcgtcgagatcacgctgcaaccgtggcgcgccttcgcgcccgac 393 Query: 327 ggcgtcatcctattctcggacatactcacgccgctgccggccatcggggtgccgtttgat 386 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct: 394 ggcgtcatcctgttctcggacatactcacgccgctgccggccattggggtgccattcgat 453 Query: 387 atctcggaatccaaggggccggtgatccagtcgcctgtgcggacggaggaacaggtcagg 446 ||||| || ||||||||||| ||||||||||| || ||| || | ||||| ||||| ||| Sbjct: 454 atctccgactccaaggggcctgtgatccagtctcccgtgaggtccgaggagcaggtgagg 513 Query: 447 gagctc 452 |||||| Sbjct: 514 gagctc 519 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 34 ccgccgccttcctctccgcggctcctgcctcctcgtcctcc 74 |||||||||||||| ||||||| || |||||||| |||||| Sbjct: 83 ccgccgccttcctcgccgcggcgccggcctcctcctcctcc 123
>dbj|AK099135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047E18, full insert sequence Length = 1523 Score = 345 bits (174), Expect = 8e-92 Identities = 273/306 (89%) Strand = Plus / Plus Query: 147 gcggcgaggggcgaggacgggctgcccaggccgccggcgtggatgatgcggcaggctggg 206 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 212 gcggcgaggggcgaggacgggctgccgcggccgccggcgtggatgatgcggcaggtcggg 271 Query: 207 cggtacatggcgtcgtaccaggcgctgtccaagcgccacccttcgttccgggagcggtcg 266 |||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||||| Sbjct: 272 cggtacatggcggagtaccaggcgctcgccatgcgccacccctcgttccgggagcggtcc 331 Query: 267 gagaccaccgacctcatcgtcgaaatcacgctacagccctggcacgccttcgcacccgac 326 ||||| ||||| ||||||||||| |||||||| || || |||| ||||||||| |||||| Sbjct: 332 gagacgaccgaactcatcgtcgagatcacgctgcaaccgtggcgcgccttcgcgcccgac 391 Query: 327 ggcgtcatcctattctcggacatactcacgccgctgccggccatcggggtgccgtttgat 386 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct: 392 ggcgtcatcctgttctcggacatactcacgccgctgccggccattggggtgccattcgat 451 Query: 387 atctcggaatccaaggggccggtgatccagtcgcctgtgcggacggaggaacaggtcagg 446 ||||| || ||||||||||| ||||||||||| || ||| || | ||||| ||||| ||| Sbjct: 452 atctccgactccaaggggcctgtgatccagtctcccgtgaggtccgaggagcaggtgagg 511 Query: 447 gagctc 452 |||||| Sbjct: 512 gagctc 517 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 34 ccgccgccttcctctccgcggctcctgcctcctcgtcctcc 74 |||||||||||||| ||||||| || |||||||| |||||| Sbjct: 81 ccgccgccttcctcgccgcggcgccggcctcctcctcctcc 121
>gb|BT016651.1| Zea mays clone Contig484 mRNA sequence Length = 1596 Score = 325 bits (164), Expect = 7e-86 Identities = 272/308 (88%) Strand = Plus / Plus Query: 147 gcggcgaggggcgaggacgggctgcccaggccgccggcgtggatgatgcggcaggctggg 206 |||||| ||||||||||||| || || | ||||| |||||||||||||||||||| ||| Sbjct: 241 gcggcgcggggcgaggacggcctcccacgcccgcccgcgtggatgatgcggcaggcaggg 300 Query: 207 cggtacatggcgtcgtaccaggcgctgtccaagcgccacccttcgttccgggagcggtcg 266 |||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || Sbjct: 301 cggtacatggcggagtaccaggcgctggccaagcgccacccctcgttccgggagcgctcc 360 Query: 267 gagaccaccgacctcatcgtcgaaatcacgctacagccctggcacgccttcgcacccgac 326 |||| ||| |||||||||||||| |||||||| ||||| |||| |||||||| |||||| Sbjct: 361 gagaacacggacctcatcgtcgagatcacgctgcagccgtggcgtgccttcgcgcccgac 420 Query: 327 ggcgtcatcctattctcggacatactcacgccgctgccggccatcggggtgccgtttgat 386 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 421 ggcgtcatcctgttctcggacatactcacgcccctgccggccatcggggtgccgttcgat 480 Query: 387 atctcggaatccaaggggccggtgatccagtcgcctgtgcggacggaggaacaggtcagg 446 |||||||| ||||||||||| |||||||| ||||| || ||| | | || ||||| ||| Sbjct: 481 atctcggactccaaggggcccgtgatccaatcgccagtacggtccaaagagcaggtgagg 540 Query: 447 gagctcgt 454 |||||||| Sbjct: 541 gagctcgt 548
>gb|BT016342.1| Zea mays clone Contig175 mRNA sequence Length = 1335 Score = 285 bits (144), Expect = 6e-74 Identities = 267/308 (86%) Strand = Plus / Plus Query: 147 gcggcgaggggcgaggacgggctgcccaggccgccggcgtggatgatgcggcaggctggg 206 |||||| ||||||||||||| || || | || || |||||||||||||| ||||| ||| Sbjct: 131 gcggcgcggggcgaggacggcctcccacgcccacccgcgtggatgatgcgacaggcaggg 190 Query: 207 cggtacatggcgtcgtaccaggcgctgtccaagcgccacccttcgttccgggagcggtcg 266 |||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || Sbjct: 191 cggtacatggcggagtaccaggcgctggccaagcgccacccctcgttccgggagcgctcc 250 Query: 267 gagaccaccgacctcatcgtcgaaatcacgctacagccctggcacgccttcgcacccgac 326 |||| ||| |||||||||||||| |||||||| ||||| |||| |||||||| || ||| Sbjct: 251 gagaacacggacctcatcgtcgagatcacgctgcagccgtggcgtgccttcgcgcctgac 310 Query: 327 ggcgtcatcctattctcggacatactcacgccgctgccggccatcggggtgccgtttgat 386 ||||||||||| ||||| |||||||||||||| || |||||||||||||| ||||| ||| Sbjct: 311 ggcgtcatcctgttctcagacatactcacgcccctaccggccatcggggtaccgttcgat 370 Query: 387 atctcggaatccaaggggccggtgatccagtcgcctgtgcggacggaggaacaggtcagg 446 |||||||| ||||||||||| |||||||| ||||| |||||| | || | ||||| ||| Sbjct: 371 atctcggactccaaggggcccgtgatccaatcgccagtgcggtccgaagggcaggtgagg 430 Query: 447 gagctcgt 454 |||||||| Sbjct: 431 gagctcgt 438
>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7 Length = 349213 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 324 gacggcgtcatcctattctcggacatactcacgccgctgccgg 366 |||||||| ||||| ||||| ||||| |||||||||||||||| Sbjct: 57828 gacggcgtgatcctgttctccgacatcctcacgccgctgccgg 57870 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 186 tggatgatgcggcaggctgggcggtacatg 215 ||||||||||| ||||||||||| |||||| Sbjct: 57690 tggatgatgcgtcaggctgggcgttacatg 57719
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 186 tggatgatgcggcaggctgggcg 208 ||||||||||||||||||||||| Sbjct: 1993799 tggatgatgcggcaggctgggcg 1993777
>gb|AE009444.1| Brucella melitensis 16M chromosome I, section 1 of 195 of the complete sequence Length = 11480 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 186 tggatgatgcggcaggctgggcg 208 ||||||||||||||||||||||| Sbjct: 249 tggatgatgcggcaggctgggcg 271
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 186 tggatgatgcggcaggctgggcg 208 ||||||||||||||||||||||| Sbjct: 2010461 tggatgatgcggcaggctgggcg 2010439
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 186 tggatgatgcggcaggctgggcg 208 ||||||||||||||||||||||| Sbjct: 2007580 tggatgatgcggcaggctgggcg 2007558
>ref|NM_192602.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1980 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 62 ctcctcgtcctccacccaccgc 83 |||||||||||||||||||||| Sbjct: 1689 ctcctcgtcctccacccaccgc 1668
>gb|AY123429.1|AY123426S04 Papio anubis anubis neurofibromatosis type 2 region, section 4; and merlin (NF2) gene, exons 2 through 16 and complete cds Length = 100801 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 15 gctacggctacggccacggccg 36 |||||||||||||||||||||| Sbjct: 99373 gctacggctacggccacggccg 99394
>emb|Z11705.1|SYNHEME Synechococcus sp. hemE gene for putative uroporphyrinogen decarboxylase Length = 1374 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 321 cccgacggcgtcatcctattctcgga 346 ||||||||||||||||| |||||||| Sbjct: 261 cccgacggcgtcatcctgttctcgga 286
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 164 cgggctgcccaggccgccggcg 185 |||||||||||||||||||||| Sbjct: 2518789 cgggctgcccaggccgccggcg 2518768 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 161 ggacgggctgcccaggccgccg 182 |||||||||||||||||||||| Sbjct: 1600738 ggacgggctgcccaggccgccg 1600717 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 352 tcacgccgctgccggccatcggggtgccg 380 |||| |||||||||| ||||||||||||| Sbjct: 3001464 tcactccgctgccggtcatcggggtgccg 3001436
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 321 cccgacggcgtcatcctattctcgga 346 ||||||||||||||||| |||||||| Sbjct: 518492 cccgacggcgtcatcctgttctcgga 518467
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451D05 Length = 148381 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 62 ctcctcgtcctccacccaccgc 83 |||||||||||||||||||||| Sbjct: 32937 ctcctcgtcctccacccaccgc 32916
>gb|M31544.1|ANIGLGB Synechococcus PCC6301 branching enzyme (glgB) gene, complete cds, and urophorphyrinogen decarboxylase (hemE) gene, 5' end Length = 2709 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 321 cccgacggcgtcatcctattctcgga 346 ||||||||||||||||| |||||||| Sbjct: 2680 cccgacggcgtcatcctgttctcgga 2705
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 321 cccgacggcgtcatcctattctcgga 346 ||||||||||||||||| |||||||| Sbjct: 1102311 cccgacggcgtcatcctgttctcgga 1102336
>ref|XM_368266.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00978.4) partial mRNA Length = 1005 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 gctacggctacggccacggcc 35 ||||||||||||||||||||| Sbjct: 158 gctacggctacggccacggcc 178
>emb|AL109976.23|HSDJ794I6 Human DNA sequence from clone RP4-794I6 on chromosome 20 Contains the 3'end of the ITPA gene for inosine triphosphatase (nucleoside triphosphate pyrophosphatase), the 3' end of the C20orf194 gene for chromosome 20 open reading frame 194, the SLC4A11 gene for solute carrier family 4, sodium bicarbonate transporter-like 1, member 11 (bicarbonate transporter related protein 1, BTR1) and two CpG islands, complete sequence Length = 119071 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 ctccctgctatctccgcctcc 116 ||||||||||||||||||||| Sbjct: 50051 ctccctgctatctccgcctcc 50071
>emb|X67219.1|DMROPB D.melanogaster Rop gene Length = 2270 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 tctcggacatactcacgccgc 360 ||||||||||||||||||||| Sbjct: 2059 tctcggacatactcacgccgc 2039
>emb|X67218.1|DMROPA D.melanogaster Rop mRNA Length = 2065 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 tctcggacatactcacgccgc 360 ||||||||||||||||||||| Sbjct: 1854 tctcggacatactcacgccgc 1834
>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the 5' end of a novel gene, two novel genes, the Taok1 gene for TAO kinase 1, a eukaryotic translation initiation factor 2 subunit 1 alpha (Eif2s1) pseudogene, a ribosomal protein S2 (Rps2) pseudogene, the Cryba1 gene for crystallin beta A1 and two CpG islands, complete sequence Length = 220230 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 gctacggccacggccgccgcc 41 ||||||||||||||||||||| Sbjct: 178260 gctacggccacggccgccgcc 178240
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 180 ccggcgtggatgatgcggcaggctgggcg 208 |||| |||||||||||| ||||||||||| Sbjct: 526133 ccggtgtggatgatgcgtcaggctgggcg 526161
>gb|AC093958.2| Drosophila melanogaster 3L BAC RP98-48M7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174373 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 tctcggacatactcacgccgc 360 ||||||||||||||||||||| Sbjct: 43467 tctcggacatactcacgccgc 43487
>gb|U15967.1|DMU15967 Drosophila melanogaster rfc40, Rop, and small GTP binding protein (Rop) genes, complete cds Length = 10223 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 tctcggacatactcacgccgc 360 ||||||||||||||||||||| Sbjct: 3860 tctcggacatactcacgccgc 3880
>ref|NM_079192.2| Drosophila melanogaster Ras opposite CG15811-RA (Rop), mRNA Length = 2417 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 tctcggacatactcacgccgc 360 ||||||||||||||||||||| Sbjct: 2059 tctcggacatactcacgccgc 2039
>gb|AY052094.1| Drosophila melanogaster SD04216 full length cDNA Length = 2231 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 tctcggacatactcacgccgc 360 ||||||||||||||||||||| Sbjct: 1840 tctcggacatactcacgccgc 1820
>gb|AE003480.4| Drosophila melanogaster chromosome 3L, section 14 of 83 of the complete sequence Length = 311933 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 tctcggacatactcacgccgc 360 ||||||||||||||||||||| Sbjct: 141265 tctcggacatactcacgccgc 141285
>emb|CT030137.13| Mouse DNA sequence from clone RP24-374C21 on chromosome 12, complete sequence Length = 197285 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 13 ccgctacggctacggccacggccgccgcc 41 |||| ||||| |||||||||||||||||| Sbjct: 69790 ccgccacggccacggccacggccgccgcc 69762
>ref|XM_470105.1| Oryza sativa (japonica cultivar-group), mRNA Length = 471 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 acggccgccgccttcctctccgcg 53 |||||||||||||||||| ||||| Sbjct: 257 acggccgccgccttcctccccgcg 234
>ref|XM_469895.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1160 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 13 ccgctacggctacggccacggccgccgccttc 44 |||| ||||| |||||||||||| |||||||| Sbjct: 82 ccgccacggccacggccacggccaccgccttc 113
>ref|XM_424380.1| PREDICTED: Gallus gallus similar to Protein C8orf2 (UNQ2441/PRO9924/PRO5003) (LOC426769), mRNA Length = 1520 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gccgccgccttcctctccgc 52 |||||||||||||||||||| Sbjct: 112 gccgccgccttcctctccgc 131
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 acggccgccgccttcctctccgcg 53 |||||||||||||||||| ||||| Sbjct: 33964279 acggccgccgccttcctccccgcg 33964302 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 13 ccgctacggctacggccacggccgccgccttc 44 |||| ||||| |||||||||||| |||||||| Sbjct: 31392798 ccgccacggccacggccacggccaccgccttc 31392767
>ref|XM_543461.2| PREDICTED: Canis familiaris similar to meningioma 1 (LOC486335), mRNA Length = 3337 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ggctgcccaggccgccggcg 185 |||||||||||||||||||| Sbjct: 436 ggctgcccaggccgccggcg 417
>gb|U35248.2|SSU35248 Streptococcus salivarius urea transporter (ureI) gene, partial cds; urease beta subunit (ureA), urease gamma subunit (ureB), urease alpha subunit (ureC), urease accessory protein (ureE), urease accessory protein (ureF), urease accessory protein (ureG), urease accessory protein (ureD), nickel permease (ureM), nickel permease (ureQ), and nickel transport ATP-binding protein (ureO) genes, complete cds; and AtmA-like protein gene, partial cds Length = 8497 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 catcgtcgaaatcacgctacagcc 304 ||||||||||||||||||| |||| Sbjct: 3876 catcgtcgaaatcacgctatagcc 3853
>emb|AL353597.20| Human DNA sequence from clone RP1-153P14 on chromosome 6 Contains the gene for a novel protein (containing KIAA0082, FLJ22156 and FLJ20341), three novel genes, the gene for a novel protein and three CpG islands, complete sequence Length = 162451 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 acaggtcagggagctcgttc 456 |||||||||||||||||||| Sbjct: 136399 acaggtcagggagctcgttc 136418
>emb|AL031728.12|HS1071N3 Human DNA sequence from clone RP5-1071N3 on chromosome 1p36.2 Contains the 5' end of the ECE1 gene for endothelin converting enzyme 1, a novel gene and a CpG island, complete sequence Length = 74037 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 ggcgaggggcgaggacgggctgcc 172 |||||||||||||||| ||||||| Sbjct: 56142 ggcgaggggcgaggactggctgcc 56119
>gb|AF389345.1| Danio rerio transcription factor YY1 mRNA, complete cds Length = 2903 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ctcctgcctcctcgtcctcc 74 |||||||||||||||||||| Sbjct: 347 ctcctgcctcctcgtcctcc 328
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 13 ccgctacggctacggccacggccgccgccttc 44 |||| ||||| |||||||||||| |||||||| Sbjct: 103002 ccgccacggccacggccacggccaccgccttc 103033
>dbj|AK093322.1| Homo sapiens cDNA FLJ36003 fis, clone TESTI2015327 Length = 1543 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gtaccaggcgctgtccaagc 240 |||||||||||||||||||| Sbjct: 377 gtaccaggcgctgtccaagc 396
>gb|AC010619.7| Homo sapiens chromosome 19 clone CTD-3148I10, complete sequence Length = 179394 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gtaccaggcgctgtccaagc 240 |||||||||||||||||||| Sbjct: 3867 gtaccaggcgctgtccaagc 3886
>gb|U16796.2|RCU16796 Rhodobacter capsulatus porphobilinogen deaminase (hemC) and uroporphyrinogen decarboxylase (hemE) genes, complete cds Length = 2232 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 171 cccaggccgccggcgtggatgatgcggcaggc 202 |||| |||||||| |||| ||||||||||||| Sbjct: 1212 cccacgccgccggtgtggctgatgcggcaggc 1243
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gctacggctacggccacggc 34 |||||||||||||||||||| Sbjct: 813643 gctacggctacggccacggc 813624 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gctacggctacggccacggc 34 |||||||||||||||||||| Sbjct: 813616 gctacggctacggccacggc 813597
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gccgccgccttcctctccgc 52 |||||||||||||||||||| Sbjct: 3888672 gccgccgccttcctctccgc 3888653
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 acggccgccgccttcctctccgcg 53 |||||||||||||||||| ||||| Sbjct: 34054751 acggccgccgccttcctccccgcg 34054774 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 13 ccgctacggctacggccacggccgccgccttc 44 |||| ||||| |||||||||||| |||||||| Sbjct: 31483314 ccgccacggccacggccacggccaccgccttc 31483283
>gb|AC069513.28| Homo sapiens 3 BAC RP11-171N2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174097 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 gggctgcccaggccgccggcgtgg 188 ||||||||| |||||||||||||| Sbjct: 64214 gggctgcccgggccgccggcgtgg 64191
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 acggccgccgccttcctctccgcg 53 |||||||||||||||||| ||||| Sbjct: 93412 acggccgccgccttcctccccgcg 93389
>gb|AC073533.19| Homo sapiens X BAC RP11-589J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182056 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 cctgcctcctcgtcctccacccac 80 ||||||||||| |||||||||||| Sbjct: 23221 cctgcctcctcctcctccacccac 23198
>emb|BX932498.1| Gallus gallus finished cDNA, clone ChEST632g2 Length = 922 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gccgccgccttcctctccgc 52 |||||||||||||||||||| Sbjct: 74 gccgccgccttcctctccgc 93
>emb|BX930312.1| Gallus gallus finished cDNA, clone ChEST592j2 Length = 727 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gccgccgccttcctctccgc 52 |||||||||||||||||||| Sbjct: 82 gccgccgccttcctctccgc 101
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025D05 Length = 145684 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 gactaccgctacggctacggccac 31 |||||| ||||||||||||||||| Sbjct: 28508 gactacggctacggctacggccac 28531
>dbj|AK209566.1| Mus musculus cDNA, clone:Y2G0115I04, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000027677, based on BLAT search Length = 395 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gctacggctacggccacggc 34 |||||||||||||||||||| Sbjct: 257 gctacggctacggccacggc 276
>emb|AJ232783.1|DHY232783 Drosophila hydei hairless gene Length = 3477 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 gctacggccacggccgccgc 40 |||||||||||||||||||| Sbjct: 3113 gctacggccacggccgccgc 3094
>dbj|AK100035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150H13, full insert sequence Length = 2085 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 13 ccgctacggctacggccacggccgccgccttc 44 |||| ||||| |||||||||||| |||||||| Sbjct: 108 ccgccacggccacggccacggccaccgccttc 139
>ref|NM_209509.1| Eremothecium gossypii ADR060Cp (ADR060C), mRNA Length = 735 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gctacggctacggccacggc 34 |||||||||||||||||||| Sbjct: 287 gctacggctacggccacggc 306 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gctacggctacggccacggc 34 |||||||||||||||||||| Sbjct: 260 gctacggctacggccacggc 279
>dbj|AK069023.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003F18, full insert sequence Length = 1900 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gccgccgccttcctctccgc 52 |||||||||||||||||||| Sbjct: 41 gccgccgccttcctctccgc 60
>dbj|AK065267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K20, full insert sequence Length = 1041 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 13 ccgctacggctacggccacggccgccgccttc 44 |||| ||||| |||||||||||| |||||||| Sbjct: 108 ccgccacggccacggccacggccaccgccttc 139
>gb|AY106530.1| Zea mays PCO099802 mRNA sequence Length = 690 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ccgacgactaccgctacggctacg 26 ||||||||||| |||||||||||| Sbjct: 223 ccgacgactacggctacggctacg 246
>gb|AY103810.1| Zea mays PCO140011 mRNA sequence Length = 1583 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 cggccacggccgccgccttc 44 |||||||||||||||||||| Sbjct: 80 cggccacggccgccgccttc 61
>emb|AJ430034.1|HSA430034 Homo sapiens partial MUC4 gene for mucin 4, exons 5-25 Length = 25773 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 gggctgcccaggccgccggcgtgg 188 ||||||||| |||||||||||||| Sbjct: 10756 gggctgcccgggccgccggcgtgg 10733
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gccgccgccttcctctccgc 52 |||||||||||||||||||| Sbjct: 3888646 gccgccgccttcctctccgc 3888627
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 gccgccgccttcctctccgc 52 |||||||||||||||||||| Sbjct: 50648 gccgccgccttcctctccgc 50629
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 gtcgcctgtgcggacggagg 435 |||||||||||||||||||| Sbjct: 2849906 gtcgcctgtgcggacggagg 2849887 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 ccaaggggccggtgatccag 416 |||||||||||||||||||| Sbjct: 2581564 ccaaggggccggtgatccag 2581545
>ref|NM_212617.1| Danio rerio YY1 transcription factor (yy1), mRNA Length = 2903 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ctcctgcctcctcgtcctcc 74 |||||||||||||||||||| Sbjct: 347 ctcctgcctcctcgtcctcc 328
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 acggctacggccacggccgc 37 |||||||||||||||||||| Sbjct: 2854538 acggctacggccacggccgc 2854557 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,627,836 Number of Sequences: 3902068 Number of extensions: 2627836 Number of successful extensions: 66835 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66018 Number of HSP's gapped (non-prelim): 816 length of query: 473 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 451 effective length of database: 17,147,199,772 effective search space: 7733387097172 effective search space used: 7733387097172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)