>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC|
           1.3.1.33) (PCR A) (NADPH-protochlorophyllide
           oxidoreductase A) (POR A)
          Length = 388

 Score =  122 bits (307), Expect = 3e-28
 Identities = 66/103 (64%), Positives = 67/103 (65%)
 Frame = +1

Query: 124 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 303
           TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ                     
Sbjct: 9   TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPSPVTTSPGSTASSPSG 68

Query: 304 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
           KKTLRQGVVVIT               ETGKWHVVMACRDFL+
Sbjct: 69  KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLK 111

>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC|
           1.3.1.33) (PCR A) (NADPH-protochlorophyllide
           oxidoreductase A) (POR A)
          Length = 388

 Score =  121 bits (304), Expect = 6e-28
 Identities = 65/103 (63%), Positives = 66/103 (64%)
 Frame = +1

Query: 124 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 303
           TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ                     
Sbjct: 9   TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQVATAPSSVTTSPGSATAKPSG 68

Query: 304 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
           KKTLRQGVVVIT               ETGKWHVVMACRDFL+
Sbjct: 69  KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLK 111

>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC|
           1.3.1.33) (PCR) (NADPH-protochlorophyllide
           oxidoreductase) (POR)
          Length = 398

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
 Frame = +1

Query: 127 LSVPKKGSSMGAVAVKDTAAFLGVSS----KAKKASLAVRTQ--------XXXXXXXXXX 270
           LS+PK+G S  +V +KD++ F G+S     K++ +S  +R +                  
Sbjct: 13  LSIPKEGKS--SVCLKDSSLF-GISFSDHLKSEFSSSTLRCKRELNQQIGAIRAQTTATE 69

Query: 271 XXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
                      KKTLR+G VVIT               ETGKWHV+MACRDFL+
Sbjct: 70  SPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLK 123

>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC|
           1.3.1.33) (PCR) (NADPH-protochlorophyllide
           oxidoreductase) (POR)
          Length = 398

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 23/43 (53%), Positives = 27/43 (62%)
 Frame = +1

Query: 304 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
           KKTLR+G V+IT               ETGKWHV+MACRDFL+
Sbjct: 80  KKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLK 122

>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC|
           1.3.1.33) (PCR A) (NADPH-protochlorophyllide
           oxidoreductase A) (POR A)
          Length = 405

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 23/43 (53%), Positives = 27/43 (62%)
 Frame = +1

Query: 304 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
           KKTLR+G VV+T               ETGKWHV+MACRDFL+
Sbjct: 87  KKTLRKGNVVVTGASSGLGLATAKALAETGKWHVIMACRDFLK 129

>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC|
           1.3.1.33) (PCR) (NADPH-protochlorophyllide
           oxidoreductase) (POR)
          Length = 399

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
 Frame = +1

Query: 124 TLSVPKKGSSMGAVAVKDTAAFLGVSS-----KAKKASLAVRTQ-------XXXXXXXXX 267
           + S+PK+G  +GA ++KD+  F GVSS     K    S A+R +                
Sbjct: 12  SFSIPKEGK-IGA-SLKDSTLF-GVSSLSDSLKGDFTSSALRCKELRQKVGAVRAETAAP 68

Query: 268 XXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
                       KKTLR+G VVIT               E+GKWHV+MACRD+L+
Sbjct: 69  ATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLK 123

>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC|
           1.3.1.33) (PCR B) (NADPH-protochlorophyllide
           oxidoreductase B) (POR B)
          Length = 401

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 22/43 (51%), Positives = 27/43 (62%)
 Frame = +1

Query: 304 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
           KKTLR+G VV+T               ETGKW+V+MACRDFL+
Sbjct: 83  KKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLK 125

>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC|
           1.3.1.33) (PCR B) (NADPH-protochlorophyllide
           oxidoreductase B) (POR B)
          Length = 395

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +1

Query: 160 AVAVKDTAAFLGVSSK-AKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQGVVVI 336
           A  +K  A  LG+ +K    +S+A+R Q                     KKT+R G  +I
Sbjct: 33  ADGLKLDATSLGLRTKRVNTSSVAIRAQAAAVSAPTATPASPAG-----KKTVRTGNAII 87

Query: 337 TXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
           T               E+GKWHV+MACRD+L+
Sbjct: 88  TGASSGLGLATAKALAESGKWHVIMACRDYLK 119

>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC|
           1.3.1.33) (PCR C) (NADPH-protochlorophyllide
           oxidoreductase C) (POR C)
          Length = 401

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 25/43 (58%)
 Frame = +1

Query: 304 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
           KKT R+G  VIT               +TGKWHV+MACR+FL+
Sbjct: 84  KKTERKGTAVITGASSGLGLATAKALADTGKWHVIMACRNFLK 126

>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)|
           (NADPH-protochlorophyllide oxidoreductase) (POR)
           (Fragment)
          Length = 313

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/36 (55%), Positives = 21/36 (58%)
 Frame = +1

Query: 325 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
           VVVIT               ETGKWHVVMACRDFL+
Sbjct: 1   VVVITGASSGLGLAAAKALAETGKWHVVMACRDFLK 36

>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC|
           1.3.1.33) (PCR) (NADPH-protochlorophyllide
           oxidoreductase) (POR)
          Length = 458

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 28/96 (29%), Positives = 39/96 (40%)
 Frame = +1

Query: 145 GSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQG 324
           G  MG VA K   A L VS+ A      ++++                     KKT  + 
Sbjct: 92  GLRMGEVA-KFGGALLSVSTVAAN----LKSKPGVLSVNAVTAPAETMNKPSSKKTATKS 146

Query: 325 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
             +IT               +TG+WHV+MACRDFL+
Sbjct: 147 TCIITGASSGLGLATAKALADTGEWHVIMACRDFLK 182

>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC|
           1.3.1.33) (PCR) (NADPH-protochlorophyllide
           oxidoreductase) (POR)
          Length = 397

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 310 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLR 432
           T ++   +IT                TG+WHVVMACRDFL+
Sbjct: 82  TQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDFLK 122

>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 366

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -1

Query: 182 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 33
           AVS       L  F+G+E VEG S + +D  E  L      L++ +ELEL
Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292

>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 917

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 323 PCRSVFLPLGDDAVEPGLVVTGEGAVATCVLTAS 222
           P   V+L LGD  + P + + G+  VAT   TAS
Sbjct: 258 PEAGVYLSLGDQRLNPNVTLDGDSLVATATATAS 291

>YHIM_ECOLI (P37630) Inner membrane protein yhiM|
          Length = 364

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 290 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 153
           D    G V+ G G +A CV T + +    LL P+NAA S +   P+
Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162

>CASK_CAMDR (P79139) Kappa-casein precursor|
          Length = 182

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 284 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 162
           VEP ++ T E AV T V+  + + F    TP    V  T+T
Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180

>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 924

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 311 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 222
           V+L LGD  + P + + G+  VAT   TAS
Sbjct: 262 VYLALGDQNLSPDVTLEGDAFVATATATAS 291

>CASK_LAMGU (Q28451) Kappa-casein (Fragment)|
          Length = 125

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 284 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 162
           VEP ++ T E  V T V+  + + F    TP    V  T+T
Sbjct: 83  VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123

>FLR1_YEAST (P38124) Fluconazole resistance protein 1|
          Length = 548

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 26/86 (30%), Positives = 39/86 (45%)
 Frame = -1

Query: 269 VVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDG 90
           + TG G VA  +   S     L+L   +A       AP+L P LG   V+ ++WR +   
Sbjct: 212 LATGGGTVADII---SPEMVPLVLGMWSAGA---VAAPVLAPLLGAAMVDAKNWRFIFWL 265

Query: 89  ELGLSLASTALQEFNELELECTVLLY 12
            + LS A+  L  F   E +   +LY
Sbjct: 266 LMWLSAATFILLAFFFPETQHHNILY 291

>ANP3_PSEAM (P02733) Ice-structuring protein 3 (ISP 3) (Antifreeze peptide 3)|
          Length = 37

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 263 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 159
           T   A A   LTA++A  A  LT  +AA +  ATA
Sbjct: 2   TASDAAAAAALTAABAAAAAKLTABBAAAAAAATA 36

>CASK_TAYTA (Q28794) Kappa-casein (Fragment)|
          Length = 146

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 284 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 162
           VEP L+ T E  V T V+  + + F +  TP   AV  ++T
Sbjct: 104 VEPTLIPTTEPVVNTVVIPEAASEFLITNTPETTAVQVSST 144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,255,180
Number of Sequences: 219361
Number of extensions: 309770
Number of successful extensions: 1236
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)