>NHR41_CAEEL (Q9N4B8) Nuclear hormone receptor family member nhr-41|
          Length = 615

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = -1

Query: 398 QPQREEASSPRAKCQEPTLQDGRTDEQYSSNASLSLLNKGRRSHLG-CWAMVAVGREEWS 222
           Q +R   ++    C     Q   T E  S N  LSL+     + LG   A++  G     
Sbjct: 223 QAERRPVNNSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHETKLGGLEALIKPGSPVML 282

Query: 221 RGGEE----QREKLGEQKERGLGGCPPSST 144
           +  ++    +RE +GE +   +G  PPS++
Sbjct: 283 QNTQDYMDVKRESIGEDEMTVIGLVPPSAS 312

>ICAL_PIG (P12675) Calpastatin (Calpain inhibitor)|
          Length = 713

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 413 SLSLHQPQREEASSPRAKCQEPTLQDGRTDEQYSSNAS 300
           S S  QP  E+++ P+AK Q+PT  DG+      S AS
Sbjct: 85  SRSNEQPTSEKSTKPKAKPQDPTPSDGKLSVTGVSAAS 122

>REV_CAEV (P31628) Trans-regulatory splicing-like protein (REV-like protein)|
          Length = 133

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = -1

Query: 386 EEASSPRAKC--QEPTLQDGRTDEQYSSNASLSLLNKGRRSHLGCWAMVAVGREEWSRGG 213
           EE    R  C  ++  +QD +     + ++     ++ RR   G W         W RG 
Sbjct: 23  EEEKGKRKGCIERQQDIQDLKYPNLPAGHSHHGNKSRRRRRQSGFW--------RWLRGI 74

Query: 212 EEQREKLGEQKERGLGGC 159
             QR+K     E+GLG C
Sbjct: 75  RRQRDKPKGDSEKGLGSC 92

>YCF2_PELHO (Q32836) Protein ycf2|
          Length = 2109

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
 Frame = -1

Query: 383 EASSPRAKCQEPTLQDGRTDEQYSSNASLSLLNKGRRSHLGCWAMV--------AVGREE 228
           E+  P A+    TL   RT  +Y+ N   S L K R+        +        A  R++
Sbjct: 444 ESGIPGAQIGNETLSH-RTLMKYTVNRHFSSLKKSRKKSFDPLLFIERSMNRDPAAYRDK 502

Query: 227 WSRGGEEQREKL----GEQKER 174
           WS+GG+  +E L     EQK R
Sbjct: 503 WSKGGKTFQEHLEHFVSEQKNR 524

>M3KL4_HUMAN (Q5TCX8) Mitogen-activated protein kinase kinase kinase (EC|
           2.7.11.25) (Mixed lineage kinase 4)
          Length = 1036

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -3

Query: 390 KRRSIKSSSQMPRTNPTRRTDGRAIQL 310
           KRRS+ SSS  P ++PT     RAIQL
Sbjct: 533 KRRSLNSSSSSPPSSPTMMPRLRAIQL 559

>GOG8A_HUMAN (Q9NZW0) Golgin subfamily A member 8A/B (Golgi autoantigen|
           golgin-67) (88 kDa Golgi protein) (Gm88 autoantigen)
          Length = 460

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
 Frame = -1

Query: 413 SLSLHQPQREEASSPRAKC--QEPTLQD---------GRTDEQYSSNASLSLLNKGRRSH 267
           SLS  + Q  E   P A     E  LQD         G    Q  +N  +SLLN+G++  
Sbjct: 132 SLSRLKNQMAEPLPPDAPAVSSEVELQDLRKELERVAGELQAQVENNQCISLLNRGQKER 191

Query: 266 LGCWAMVAVGREEWSRGGEEQREKLGEQKER 174
           L         RE+  R  +EQ+E+L E+++R
Sbjct: 192 L---------REQEER-LQEQQERLREREKR 212

>MCA1_CRIGR (O54873) Multisynthetase complex auxiliary component p43 [Contains:|
           Endothelial monocyte-activating polypeptide 2 (EMAP-II)
           (Small inducible cytokine subfamily E member 1)]
          Length = 359

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = -1

Query: 356 QEPTLQDGRTDEQYSSNASLSLLNKGRRSHLGCWAMVAVGREEWSRGGEEQR------EK 195
           Q P      T  Q SS  S S++     S + C        +E S+GG E++      +K
Sbjct: 123 QIPVPVQSDTPVQASSAVSTSVIQSTSVSTISC------SIKEHSKGGGEEKKVKEKTDK 176

Query: 194 LGEQKERGLGGCPPSS 147
            GE+KE+ L    PS+
Sbjct: 177 KGEKKEKKLQSAAPSA 192

>POL_SIVVT (P05895) Pol polyprotein [Contains: Protease (Retropepsin) (EC|
           3.4.23.-); Reverse transcriptase/ribonuclease H (EC
           2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
          Length = 1061

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -1

Query: 422 CTTSLSLHQPQREEASSPRAKCQEPTLQDGRTDEQYSSNASLSLLNKGRRSHLGCW 255
           C +S   H P R    +P A C+E    +G  +E   S  + S L++G    L  W
Sbjct: 63  CASSTERHHPIRPSKEAPAAICRERETTEGAKEE---STGNESGLDRGIFFELPLW 115

>PITM2_MOUSE (Q6ZPQ6) Membrane-associated phosphatidylinositol transfer protein|
           2 (Phosphatidylinositol transfer protein,
           membrane-associated 2) (Pyk2 N-terminal
           domain-interacting receptor 3) (NIR-3) (Drosophila
           retinal degeneration B homolog 2) (RdgB2)
          Length = 1335

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 427 LAVPPPSPCTSHKEKKHQVLEPNAKNQPYKTD 332
           LA+PPPSP T     + + + PN +  P   D
Sbjct: 860 LALPPPSPTTQGPRARARQVSPNLERAPCLPD 891


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,607,395
Number of Sequences: 219361
Number of extensions: 1077272
Number of successful extensions: 3247
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3241
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)