>ref|XM_785669.1| PREDICTED: Strongylocentrotus purpuratus similar to Neuronal
           acetylcholine receptor protein, alpha-6 subunit
           precursor (LOC585863), mRNA
          Length = 867

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 53  aacacgattctgtgatctcat 73
           |||||||||||||||||||||
Sbjct: 601 aacacgattctgtgatctcat 581

>emb|AL669990.1|NCB8J24 Neurospora crassa DNA linkage group II BAC clone B8J24
          Length = 77612

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 227   actcctccctccccaccgcca 247
             |||||||||||||||||||||
Sbjct: 44228 actcctccctccccaccgcca 44208

>gb|AC069216.13| Homo sapiens 3 BAC RP11-621D6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 150145

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 280    cctttattaagcagagagaga 300
              |||||||||||||||||||||
Sbjct: 116114 cctttattaagcagagagaga 116134

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 144     tgtagaagaaggtgggcagccccca 168
               ||||| |||||||||||||||||||
Sbjct: 1624264 tgtagtagaaggtgggcagccccca 1624240

>emb|BX000444.11| Zebrafish DNA sequence from clone RP71-31C2 in linkage group 9,
             complete sequence
          Length = 128377

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 322   tcgtccgtccgtccgtcttgt 342
             |||||||||||||||||||||
Sbjct: 19224 tcgtccgtccgtccgtcttgt 19244

>gb|AY394939.1| Danio rerio clone RK046A1C09 WD repeat domain 1 mRNA, complete cds
          Length = 2376

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 319  tgctcgtccgtccgtccgtcttgt 342
            |||||||||||||||||| |||||
Sbjct: 1130 tgctcgtccgtccgtccgccttgt 1107

>gb|BC045455.1| Danio rerio WD repeat domain 1, mRNA (cDNA clone MGC:55793
            IMAGE:3817406), complete cds
          Length = 2400

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 319  tgctcgtccgtccgtccgtcttgt 342
            |||||||||||||||||| |||||
Sbjct: 1131 tgctcgtccgtccgtccgccttgt 1108

>gb|AC133550.2| Homo sapiens chromosome 16 clone RP11-22P6, complete sequence
          Length = 58207

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   ttggttcttggcatttggct 366
             ||||||||||||||||||||
Sbjct: 54081 ttggttcttggcatttggct 54062

>gb|AC123810.4| Mus musculus BAC clone RP24-178B17 from chromosome 8, complete sequence
          Length = 161521

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 344    gggttggttcttggcatttggctc 367
              |||||||||| |||||||||||||
Sbjct: 159543 gggttggttcctggcatttggctc 159520

>gb|AC122058.4| Mus musculus BAC clone RP24-468G7 from chromosome 14, complete sequence
          Length = 143331

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   agggagagggaggtggtaca 422
             ||||||||||||||||||||
Sbjct: 12424 agggagagggaggtggtaca 12443

>emb|AL121990.34|HSDJ613A2 Human DNA sequence from clone RP4-613A2 on chromosome 1q42.11-42.3
             Contains the 5' end of the NUP133 gene, a novel gene, the
             ABCB10 gene for ATP-binding cassette, sub-family B
             (MDR/TAP), member 10, a high-mobility group nucleosomal
             binding domain 2 (HMGN2) pseudogene, the TAF5L gene for
             TAF5-like RNA polymerase II, p300/CBP-associated factor
             (PCAF)-associated factor, 65kDa, the 5' end of a novel
             gene (KIAA0133) and three CpG islands, complete sequence
          Length = 147913

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   ggctggtgcagggagaggga 413
             ||||||||||||||||||||
Sbjct: 96625 ggctggtgcagggagaggga 96606

>gb|AC121574.3| Mus musculus BAC clone RP23-241E9 from 14, complete sequence
          Length = 209230

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 403  agggagagggaggtggtaca 422
            ||||||||||||||||||||
Sbjct: 5782 agggagagggaggtggtaca 5763

>gb|AC157986.4| Mus musculus chromosome 19, clone RP23-160F18, complete sequence
          Length = 207504

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    accactcctccctccccacc 243
              ||||||||||||||||||||
Sbjct: 188452 accactcctccctccccacc 188433

>gb|AC114543.10| Mus musculus, clone RP24-107C11, complete sequence
          Length = 191639

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    cgtccgtccgtccgtcttgt 342
              ||||||||||||||||||||
Sbjct: 132460 cgtccgtccgtccgtcttgt 132441

>gb|AC145203.1| Homo sapiens chromosome 19 clone XXfos-800752H11, complete sequence
          Length = 41422

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   ctccctccccaccgccacca 250
             ||||||||||||||||||||
Sbjct: 24694 ctccctccccaccgccacca 24713

>emb|Y18876.1|DSU18876 Drosophila subobscura RpII215 gene
          Length = 7816

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 323 cgtccgtccgtccgtcttgt 342
           ||||||||||||||||||||
Sbjct: 796 cgtccgtccgtccgtcttgt 815

>emb|AL592551.10| Mouse DNA sequence from clone RP23-12I13 on chromosome 11, complete
             sequence
          Length = 215657

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   gcccagcagcccaagtgaga 272
             ||||||||||||||||||||
Sbjct: 70821 gcccagcagcccaagtgaga 70840

>gb|BC066764.1| Danio rerio WD repeat domain 1, mRNA (cDNA clone MGC:77547
            IMAGE:6959928), complete cds
          Length = 2366

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 319  tgctcgtccgtccgtccgtcttgt 342
            |||||||||||||||||| |||||
Sbjct: 1078 tgctcgtccgtccgtccgccttgt 1055

>gb|AE014177.1| Mus musculus piebald deletion region section 5 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    agggagagggaggtggtaca 422
              ||||||||||||||||||||
Sbjct: 251390 agggagagggaggtggtaca 251409

>emb|BX663533.7| Zebrafish DNA sequence from clone DKEY-85A11 in linkage group 23,
             complete sequence
          Length = 33191

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   gttgaatccctgtagaagaa 153
             ||||||||||||||||||||
Sbjct: 11100 gttgaatccctgtagaagaa 11081

>gb|AC006065.3| Homo sapiens 12q24.2 BAC RPCI11-407A16 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 191134

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    tcttctctttgtggctggtg 401
              ||||||||||||||||||||
Sbjct: 118345 tcttctctttgtggctggtg 118326

>gb|AC092315.2| Homo sapiens chromosome 19 clone LLNLR-306A10, complete sequence
          Length = 44735

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   ctccctccccaccgccacca 250
             ||||||||||||||||||||
Sbjct: 32791 ctccctccccaccgccacca 32810

>gb|AC007474.5|AC007474 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone
             BACR14L19, complete sequence
          Length = 192763

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   tgctcgtccgtccgtccgtc 338
             ||||||||||||||||||||
Sbjct: 71544 tgctcgtccgtccgtccgtc 71563

>gb|AC135783.2| Homo sapiens chromosome 16 clone CTD-2555L18, complete sequence
          Length = 224150

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   ttggttcttggcatttggct 366
             ||||||||||||||||||||
Sbjct: 47509 ttggttcttggcatttggct 47490

>ref|XM_341088.2| PREDICTED: Rattus norvegicus RAS protein activator like 1 (GAP1 like)
            (predicted) (Rasal1_predicted), mRNA
          Length = 2681

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 1    tggttgatgtgcatggggatgaggagcc 28
            |||| |||||| ||||||||||||||||
Sbjct: 1831 tggtggatgtggatggggatgaggagcc 1858

>gb|AY190935.1| Drosophila erecta clone DERF01_47_N08 (D1472) genomic sequence
          Length = 43589

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   tgctcgtccgtccgtccgtc 338
             ||||||||||||||||||||
Sbjct: 19034 tgctcgtccgtccgtccgtc 19015

>gb|AF272653.1|AF272653 Drosophila subobscura strain pp10 RNA polymerase II largest subunit
            (RpII215) gene, complete cds
          Length = 7936

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 323  cgtccgtccgtccgtcttgt 342
            ||||||||||||||||||||
Sbjct: 1409 cgtccgtccgtccgtcttgt 1428

>gb|AF272652.1|AF272652 Drosophila subobscura strain pp3 RNA polymerase II largest subunit
            (RpII215) gene, complete cds
          Length = 7957

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 323  cgtccgtccgtccgtcttgt 342
            ||||||||||||||||||||
Sbjct: 1403 cgtccgtccgtccgtcttgt 1422

>gb|AF272645.1|AF272645 Drosophila subobscura strain pp6 RNA polymerase II largest subunit
            (RpII215) gene, complete cds
          Length = 7963

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 323  cgtccgtccgtccgtcttgt 342
            ||||||||||||||||||||
Sbjct: 1432 cgtccgtccgtccgtcttgt 1451

>gb|AF272644.1|AF272644 Drosophila subobscura strain pp31 RNA polymerase II largest subunit
            (RpII215) gene, complete cds
          Length = 7941

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 323  cgtccgtccgtccgtcttgt 342
            ||||||||||||||||||||
Sbjct: 1430 cgtccgtccgtccgtcttgt 1449

>gb|AF272643.1|AF272643 Drosophila subobscura strain pp1 RNA polymerase II largest subunit
            (RpII215) gene, complete cds
          Length = 7919

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 323  cgtccgtccgtccgtcttgt 342
            ||||||||||||||||||||
Sbjct: 1404 cgtccgtccgtccgtcttgt 1423

>gb|AC153884.1| Mus musculus  6 BAC RP23-476E22 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 195597

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   cgccaccattgcccagcagc 262
             ||||||||||||||||||||
Sbjct: 32519 cgccaccattgcccagcagc 32538

>gb|AC158677.2| Mus musculus 6 BAC RP23-175H4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224075

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    cgccaccattgcccagcagc 262
              ||||||||||||||||||||
Sbjct: 143798 cgccaccattgcccagcagc 143817

>gb|AE003824.3| Drosophila melanogaster chromosome 2R, section 26 of 73 of the complete
              sequence
          Length = 268836

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 319    tgctcgtccgtccgtccgtc 338
              ||||||||||||||||||||
Sbjct: 226888 tgctcgtccgtccgtccgtc 226907

>gb|AC106833.10| Mus musculus chromosome 19, clone RP24-503K22, complete sequence
          Length = 180887

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   accactcctccctccccacc 243
             ||||||||||||||||||||
Sbjct: 39450 accactcctccctccccacc 39431

>gb|AC149051.4| Mus musculus BAC clone RP24-325F10 from 8, complete sequence
          Length = 184939

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 344    gggttggttcttggcatttggctc 367
              |||||||||| |||||||||||||
Sbjct: 122918 gggttggttcctggcatttggctc 122895

>gb|AC145973.3| Gallus gallus BAC clone CH261-2E2 from chromosome unknown, complete
            sequence
          Length = 190804

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 338  cttgtagggttggttcttgg 357
            ||||||||||||||||||||
Sbjct: 9621 cttgtagggttggttcttgg 9640

>ref|NM_201039.1| Danio rerio WD repeat domain 1 (wdr1), mRNA
          Length = 2400

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 319  tgctcgtccgtccgtccgtcttgt 342
            |||||||||||||||||| |||||
Sbjct: 1131 tgctcgtccgtccgtccgccttgt 1108


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,492,850
Number of Sequences: 3902068
Number of extensions: 4492850
Number of successful extensions: 103626
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103531
Number of HSP's gapped (non-prelim): 95
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)